mRNA_H-paniculata_contig4352.11075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4352.11075.1
Unique NamemRNA_H-paniculata_contig4352.11075.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4352.11075.1 vs. uniprot
Match: D7FHP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 7.480e-36
Identity = 101/251 (40.24%), Postives = 132/251 (52.59%), Query Frame = 3 
Query:    3 DREALFEKMITGPGIMATKYPRRGKPRNVILTLMMPEGDPPQEQQPQQTSR----------VSAFNELAGVVLSEDDSTESPSGSLSS-----RLSGSTMG-----------------------SEVVQYR---------SLKSLGNLQLVWNRKGRGSGSLKVAEVIDALAGLQSQVLRPVGVELRKRAAT-------DAGGKEEEEK-YASLLTGRRSLDLKFSTPLARNRFVSAFKTFAWETDTPKAG 590
            DREALFE M++GPGI ATK+PRRGKPR+V+LTL+ P G                       V++F+  A   +       SP+ S SS     R  G T                         S+  Q+          SLK + +L+L WNR+    GSL++ EVI+A+AG+ SQ+LRPV  ELR+RAA+       + G +EEEE  + SL T RR+LDLKFST   RNRF+ AFKT AWET   +AG
Sbjct:   20 DREALFENMMSGPGIPATKFPRRGKPRSVVLTLVRPGGXXXXXXXXXXXXXXXXXXXXXXGVTSFSSTASPSMFGGSEEVSPASSFSSSVGRGRQRGITSSFGRTRFPAERDLFSKPSYKRSFRSQPHQHXXXXXXQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQILRPVCEELRRRAASVGESRVGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIRNRFMLAFKTLAWETAAARAG 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4352.11075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHP0_ECTSI7.480e-3640.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4352contigH-paniculata_contig4352:936..5036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size741
Cds size609
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930319.2464848-UTR-H-paniculata_contig4352:935..9611622930319.2464848-UTR-H-paniculata_contig4352:935..961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4352 936..961 +
1691481239.816264-UTR-H-paniculata_contig4352:935..9611691481239.816264-UTR-H-paniculata_contig4352:935..961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4352 936..961 +
1622930319.359065-UTR-H-paniculata_contig4352:4930..50361622930319.359065-UTR-H-paniculata_contig4352:4930..5036Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4352 4931..5036 +
1691481239.8666368-UTR-H-paniculata_contig4352:4930..50361691481239.8666368-UTR-H-paniculata_contig4352:4930..5036Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4352 4931..5036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930319.2618837-CDS-H-paniculata_contig4352:961..11061622930319.2618837-CDS-H-paniculata_contig4352:961..1106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 962..1106 +
1691481239.8247223-CDS-H-paniculata_contig4352:961..11061691481239.8247223-CDS-H-paniculata_contig4352:961..1106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 962..1106 +
1622930319.2811618-CDS-H-paniculata_contig4352:1782..18081622930319.2811618-CDS-H-paniculata_contig4352:1782..1808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 1783..1808 +
1691481239.8328338-CDS-H-paniculata_contig4352:1782..18081691481239.8328338-CDS-H-paniculata_contig4352:1782..1808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 1783..1808 +
1622930319.2985334-CDS-H-paniculata_contig4352:2987..31821622930319.2985334-CDS-H-paniculata_contig4352:2987..3182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 2988..3182 +
1691481239.8410158-CDS-H-paniculata_contig4352:2987..31821691481239.8410158-CDS-H-paniculata_contig4352:2987..3182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 2988..3182 +
1622930319.3176746-CDS-H-paniculata_contig4352:4373..45101622930319.3176746-CDS-H-paniculata_contig4352:4373..4510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 4374..4510 +
1691481239.8489277-CDS-H-paniculata_contig4352:4373..45101691481239.8489277-CDS-H-paniculata_contig4352:4373..4510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 4374..4510 +
1622930319.337486-CDS-H-paniculata_contig4352:4824..49301622930319.337486-CDS-H-paniculata_contig4352:4824..4930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 4825..4930 +
1691481239.8568807-CDS-H-paniculata_contig4352:4824..49301691481239.8568807-CDS-H-paniculata_contig4352:4824..4930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4352 4825..4930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4352.11075.1prot_H-paniculata_contig4352.11075.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4352 962..4930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4352.11075.1

>prot_H-paniculata_contig4352.11075.1 ID=prot_H-paniculata_contig4352.11075.1|Name=mRNA_H-paniculata_contig4352.11075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
MITGPGIMATKYPRRGKPRNVILTLMMPEGDPPQEQQPQQTSRVSAFNEL
AGVVLSEDDSTESPSGSLSSRLSGSTMGSEVVQYRSLKSLGNLQLVWNRK
GRGSGSLKVAEVIDALAGLQSQVLRPVGVELRKRAATDAGGKEEEEKYAS
LLTGRRSLDLKFSTPLARNRFVSAFKTFAWETDTPKAGIPNKPPQVLRHY
AR*
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mRNA from alignment at H-paniculata_contig4352:936..5036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4352.11075.1 ID=mRNA_H-paniculata_contig4352.11075.1|Name=mRNA_H-paniculata_contig4352.11075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4101bp|location=Sequence derived from alignment at H-paniculata_contig4352:936..5036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACCGAGAAGCCCTGTTTGAAAAGATGATCACCGGCCCTGGTATCATG
GCCACCAAGTACCCACGGCGCGGGAAGCCACGGAATGTAATTTTGACGCT
GATGATGCCTGAGGGTGATCCCCCACAAGAACAACAACCACAACAAACTA
GCCGGGTCTCGGCGTTTAACGGCGAGTATCTATTCATGTACTTGATTTGA
TGGCTATACGTTATGTGATACATTTTGTTTCGTGACTTGAGATTATGAAA
TATGACTATGGCTACGCCCGGTGCAGTTCGTGGTTGTCCTTAACCCACGG
GCTCGCTCCCCTCGCAGCGGGGGCTCGCGTAGTGAACAGCGCCGCTTGCT
GTGCTTACATGAAGATTCTGTTTTTCAGGAGTTCTTGAGAACAGAGTTTG
AGAAATCATCCGAAATGATAATGATAACGACGGCGGCCACTACGACCACC
ACCTTGCCGTGATTAAATAATAATGATACAACCAGGTGTGTAGAGGCAGT
GATGAGGGTACTTTGGTGGTGTGTAGGTCGTGCGGTCTCTGTGATTTTGT
CGTCGACTTGACGTCACGCTCTCCATGTAGGCATATAGGGCGTGACCGGT
GTATGTTGGTGAAATATCTCTTGTTATAGATGTTACTGGCGTGTTTATAT
GCATTACAGGGATACGTCCATAGCGGCCGAAGACTCAAGAAATACGATAT
CGTCGTGTTTGGGTATAGAATTGATTATATCAAATACCCACCCACCCCCA
TCATATCCTGGGGTGGCGGGTAGGAAATCGAGATGCACTTGGTGTGCGAA
ATGCTCATGGTCTTGGGTGGGGGTGAGGGTATAGTAACAGTAGCGAGAGC
TGGCAGGGGTCGTGCTTTCCGAGGTACCCAACAGGTCTCAACCCTCAGGA
ACTTCAGCCCCCGTAATCAGCTAGTTTTGCGGAGTGCCTGTTCATTGTTT
GTTCACGAACAAAGTTGGTATTTGCCCGCACTCCTTCAACACTAAATCGT
AGTTGAAAGCCCCCAAAATGGAAAGGAATAGATCCCTCTTTGCACGTGAG
ATGCACTAACCAGCTCTCGAGAGCTCGAAGCATTCTGTCTAGGTACTAGT
CATTATTTACAACTAGTCACTGGCAATACTACCTCTTGGCCGTTACAAAA
TCCGGTTCGCGAACGGGTTTCGTAGCGACCAAGATACAAAGATTTTAAAT
AGCAACCGGTAGCGAATATAATGATGAATACATCGACAGAAAGCTTATCC
AGCTCCAGGCATTTGATTAGCTTATCTCAAGCCGGGGTTCAACACGGGGG
ATTTTTTTTATTGACCGAGGGGGATCTTATTATATTAGATTTAGAGAAGA
ACCAGAACGAATAAATCGTACCGGGCTTTTTTGGGGGGGTAACGACCCCA
AATAATAAAAAAAGTGCTGTAAAGCTATCGCCTAATCAGGGGGTCACAGG
CTCCTTTTGGCTCAACGTAGCTGCTAGCACTTGGAGAAGGTTTTAATGAA
CGAGTCTAAGCCCTAACGGGTAGGACACGGCTAGGGGTAACCCATTGCCG
ATGACTGGACGCAAGTGTGATCAAGGGTTTTAACGAGTGCGGATTCTGCT
TCTCAAAGGGCAGTCTAAAACCGAACGCCAAAACGGACAAGTCTCGTACT
ACGGCTACCCCACAATTCCCTCGGTTTTTGAGCGTAGAACCGAGGGGAGA
CCGACGTGATCATTAACCTGAGTTATTCGGGGATCTAAATCGGGACTTCG
TACTTGATACTTAGTCGTGGGTTTAAGCTTCTTCCCTCACAGCACTTACG
AAGTATGTTAACAGAGGTTACATCTCTCCGGGGTGGAAAGAAAGAAAGGT
TTTAATACTATCGTCCGGTAAAAAAATCCAACGTGGTGCTACCTACTGTA
CCATGTATGAGCAAAACACGTACCGTCAGAGGGAACACGTGGTCATTATC
CAATACTATCTGTCGCGCTTTACACACACGACACTTTGTTTTCTTCCCGC
GCGCCGACGGCTTTGTTCTTCGACTATTGATCGTTTTTCACTATTTACAG
AGGATGACAGCACGGAGAGTCCCAGCGGCAGCTTATCTTCCCGGTTATCG
GGCTCCACGATGGGGTCGGAAGTCGTGCAGTACCGTTCTTTGAAGTCTCT
GGGAAACCTGCAGCTCGTGTGGAATCGAAAGGGTCGAGGCAGCGGCAGCC
TGAAAGTGGCAGAGGTTATCGATGCACTCGCCGGTCTGCAGTCTCAGGTG
TGTGTGTGTGTGGTGCGGCTATATATATGTATATATGTGTTGTGTTCGAC
GTCGCGACGTCATGCAGCAAAGACACACTTGTCTTTGCTGGAAGTGCAAT
GATGGACGGCTACATTGGTGTAGTGGTTACGACGTCATTGCCCTTCAAGT
CGTGTTGTGATCATGAGTTGAGCGCAGCGGCTTGTTGTTGCTTTCTATTA
ACAGTACAGTGAAATGTACCACTTCGTTGAATGCGATAGCTGAGGTATAT
ATGAAGTCAGTATATTGGGGTGGTACCTGACGTCACGCCTCCGACGGCTC
AAAACGTTGACCTAAACGAAACCTTTTGTGCACGCAAAGAGCCGCCAACC
GCGCCGATTTGAGCTCTATCAACGCACACTAGACACGGGGGGGGGGGGGG
GGGGGGGGGGGGGGTTAGGGTCAAGGAATAGCGGTAGTTCCGGCATTGGT
TCTATTCGCATCGCGCACAATAAAGGATGATCCATGAAACAACGAACTTT
CAGCCATGGCATTTGACAGAAGTGATGATACTGGCCTCCGCTAATAAGAA
ACTATTTGCGTCGGATGAAGCTTAGGCCTCGTTATTGACTGACCGCCCTG
ATGATGGAGTTTCAGAACAAGAATGGCATGCGGGAATGAACGTGAGGCGC
TCCAGTCGTTGTGAACAAAACCATGTCAACAACGTTTCTGTGTCATCTCT
CCCACCGTCATCATGACATTTTCATAATTCTTCCCTGCCTGTGGGGTGGA
AACTAGTTGGGGGAATTATCCCCCCGGTAAAAGGGTTAGAACATATTTAT
CTCGAGTTGTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACT
GTACTGTACTGTACTGTACTGTACTGTAACTCATCTGCCCGTCCACCAGT
CCATCGACTTCGGGCGGAAGTCGGCTGCATCGGCAATCTGATGATCACGA
CAAGCAACTATGACACCGTGTTACTCACCCATCCATTAGTTGTAGAGGGG
TACACTTCAGCTGCTAACTGTGGAATGTGCCTGCTGCCAGAGGTTTGCAG
TGTGATGTCTTCTTGTCTGTATGTGAACCGCTGTTGCCACGGCGAAGTTC
CATCGTCTGATCGTAGATCTGCATGATCACGCCAAAGTGCTGTATAATAT
AATCCAACCAAAAAATCGGCTGGTGTTCGTAATGAAAGGTATTGAGGCCC
GTCGGTGTGGAACTTCGGAAGAGAGCTGCCACGGATGCAGGCGGGAAGGA
AGAGGAGGAGAAGTACGCGTCGCTGCTCACCGGCCGGCGTTCGCTGGATC
TCAAATTTTCCACCCCGTTAGCAAGGTTCGGTCCTGTTTGGTTTTGGTTT
TGGTTTGGTTCCTCTTGAGGATGGGATATATTTGCTAGTAGCGTTTTTAT
CACTTTCGTCTAGTACGATGGCGTCGTGGTCCAGTTGAAGTCATTGCAAT
GGCACGCGCCGGAAGGGAAGGCCGCTAACGTGTGCCCAAAACATGATTTC
CTGGCTTTGCTTTGCTTTCTGTATCTCGCGTTGTTTCGCGTAGCGTCGTC
GTGGTCGTTGTCTTACACTCTTGGTTTGCGTTGCTCCTGTCTTGTCTCCT
CTCGTGTTGCATATCGTCTCATGTATTTTGTTGATTCAGAAATCGCTTTG
TCAGCGCTTTCAAGACCTTCGCCTGGGAGACCGACACCCCCAAGGCGGGT
ATACCCAATAAACCGCCTCAAGTGTTGAGGCACTATGCCCGATGAAGGAA
CGAGATCGCCGAGCTCTTGAACCGAATCACCACCTTGTAACGCCTGGAAA
AAATCAAGCACCGCTGGCCGCACTATGTTGACGAAAACGCGGGGGCAGGG
C
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Coding sequence (CDS) from alignment at H-paniculata_contig4352:936..5036+

>mRNA_H-paniculata_contig4352.11075.1 ID=mRNA_H-paniculata_contig4352.11075.1|Name=mRNA_H-paniculata_contig4352.11075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig4352:936..5036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCACCGGCCCTGGTATCATGGCCACCAAGTACCCACGGCGCGGGAA
GCCACGGAATGTAATTTTGACGCTGATGATGCCTGAGGGTGATCCCCCAC
AAGAACAACAACCACAACAAACTAGCCGGGTCTCGGCGTTTAACGATGAT
CACCGGCCCTGGTATCATGGCCACCAAGTACCCACGGCGCGGGAAGCCAC
GGAATGTAATTTTGACGCTGATGATGCCTGAGGGTGATCCCCCACAAGAA
CAACAACCACAACAAACTAGCCGGGTCTCGGCGTTTAACGAGCTGGCAGG
GGTCGTGCTTTCCGAGAGCTGGCAGGGGTCGTGCTTTCCGAGGATGACAG
CACGGAGAGTCCCAGCGGCAGCTTATCTTCCCGGTTATCGGGCTCCACGA
TGGGGTCGGAAGTCGTGCAGTACCGTTCTTTGAAGTCTCTGGGAAACCTG
CAGCTCGTGTGGAATCGAAAGGGTCGAGGCAGCGGCAGCCTGAAAGTGGC
AGAGGTTATCGATGCACTCGCCGGTCTGCAGTCTCAGGATGACAGCACGG
AGAGTCCCAGCGGCAGCTTATCTTCCCGGTTATCGGGCTCCACGATGGGG
TCGGAAGTCGTGCAGTACCGTTCTTTGAAGTCTCTGGGAAACCTGCAGCT
CGTGTGGAATCGAAAGGGTCGAGGCAGCGGCAGCCTGAAAGTGGCAGAGG
TTATCGATGCACTCGCCGGTCTGCAGTCTCAGGTATTGAGGCCCGTCGGT
GTGGAACTTCGGAAGAGAGCTGCCACGGATGCAGGCGGGAAGGAAGAGGA
GGAGAAGTACGCGTCGCTGCTCACCGGCCGGCGTTCGCTGGATCTCAAAT
TTTCCACCCCGTTAGCAAGGTATTGAGGCCCGTCGGTGTGGAACTTCGGA
AGAGAGCTGCCACGGATGCAGGCGGGAAGGAAGAGGAGGAGAAGTACGCG
TCGCTGCTCACCGGCCGGCGTTCGCTGGATCTCAAATTTTCCACCCCGTT
AGCAAGAAATCGCTTTGTCAGCGCTTTCAAGACCTTCGCCTGGGAGACCG
ACACCCCCAAGGCGGGTATACCCAATAAACCGCCTCAAGTGTTGAGGCAC
TATGCCCGATGAAAATCGCTTTGTCAGCGCTTTCAAGACCTTCGCCTGGG
AGACCGACACCCCCAAGGCGGGTATACCCAATAAACCGCCTCAAGTGTTG
AGGCACTATGCCCGATGA
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