prot_H-paniculata_contig435.11073.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig435.11073.1
Unique Nameprot_H-paniculata_contig435.11073.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length482
Homology
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BLAST of mRNA_H-paniculata_contig435.11073.1 vs. uniprot
Match: A0A6H5KWC2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWC2_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.790e-36
Identity = 106/262 (40.46%), Postives = 145/262 (55.34%), Query Frame = 0 
Query:  153 LACRSGSGREETDASMGDWDAVYTEVGGGSRDVKEKRAGLRMLFRPAGAVLRLVREFVARQGGYSTTGMKARIVAWRRSFSLAMVGLAAGAVLLMSTAGPASAS-GVVDQMEK--TRLTDMPEFSYQIREELIDLMEMDPRERAIDLKDLTLYSEELDKLDMFGDEVAVDMAMKETMRLKQRRVHEDIINKGKGRGFLPALKSSVKAIGFGIVVSAVSFSVG---WVLKSFLSMAAEEEVHLYGEEISVDATEKPQDELEGL 408
            L CR G          GD  AV  + GGG  +    R   R  F    AVLR VR+ V R    S+ G +AR+ AWRR  S+A +G+AA  +++ ++AGPA A  G+  + E   TRLT MPE  YQ RE L    E   ++R  D  DLT + EELD++DMF ++VA     +E++RLK  R  ED     +G+    +   +  AI  G+ V      +G   W  ++F++MA EEE+ LYGEEISVDATEKP +EL+ L
Sbjct:   87 LGCREGERGMNEGVHYGD--AVGGKEGGGEGEAVAAR---RARFARPAAVLRFVRQAVERGVSMSSKGTRARVAAWRRRMSVAFIGVAAAVMMMTASAGPAQALFGIGGRKEAPVTRLTYMPESVYQEREALQKFCETPQQDRLFDANDLTAFEEELDEIDMFSNKVAPSYGARESLRLKYARHAEDFATMEEGKLTAGSFGFASFAIVGGLAVVVGGTVLGGFTWACRAFMNMAREEEIFLYGEEISVDATEKPDEELDDL 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig435.11073.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWC2_9PHAE3.790e-3640.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..47
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 356..374
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 375..481
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..355
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..34
score: 0.736
NoneNo IPR availableTMHMMTMhelixcoord: 356..378
NoneNo IPR availableTMHMMTMhelixcoord: 231..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig435contigH-paniculata_contig435:3394..17068 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig435.11073.1mRNA_H-paniculata_contig435.11073.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig435 2539..17180 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig435.11073.1 ID=prot_H-paniculata_contig435.11073.1|Name=mRNA_H-paniculata_contig435.11073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=482bp
MSRRSKRSPLAAAGSTATAGLLLLCWVCAAPVEGFVAAVGGGAVASRASV
GCSTRSACSSAFTSVPSGRHYLPSIPRVEHSSISSRRQAASRRSPQHLRL
WATTVAPTWRGHDAEAGRRRQAEYLQLLRRRWEMARGDSSCGSSGGRSLS
ASLACRSGSGREETDASMGDWDAVYTEVGGGSRDVKEKRAGLRMLFRPAG
AVLRLVREFVARQGGYSTTGMKARIVAWRRSFSLAMVGLAAGAVLLMSTA
GPASASGVVDQMEKTRLTDMPEFSYQIREELIDLMEMDPRERAIDLKDLT
LYSEELDKLDMFGDEVAVDMAMKETMRLKQRRVHEDIINKGKGRGFLPAL
KSSVKAIGFGIVVSAVSFSVGWVLKSFLSMAAEEEVHLYGEEISVDATEK
PQDELEGLMPEEWNDTDAPPPDSETGATTPGDTPGPSPLPPTMGPAATVS
GGDFSTPGGGSDYPSAPESTGDDVDDDLLGM*
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