mRNA_H-paniculata_contig43498.11072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43498.11072.1
Unique NamemRNA_H-paniculata_contig43498.11072.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: A0A6H5JJV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.060e-24
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 AKVFSLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            AK  SLEAQATQLL+V I+LGLEWFVGLG+GAGANVLLRFACD+P ++AGLILAN SAE AG  E
Sbjct:  216 AKALSLEAQATQLLEVTIQLGLEWFVGLGVGAGANVLLRFACDNPGKVAGLILANASAEAAGRRE 280
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: D8LD96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD96_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.640e-23
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 AKVFSLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            AK  SLEAQA QLL+V I+LGLEWFVGLG+GAGANVLLRFACD+P ++AGLILAN S E AG  E
Sbjct:  273 AKALSLEAQAAQLLEVTIQLGLEWFVGLGVGAGANVLLRFACDNPGKVAGLILANASGEAAGRRE 337
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: A0A1J1II89_9DIPT (CLUMA_CG013225, isoform C n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1II89_9DIPT)

HSP 1 Score: 60.1 bits (144), Expect = 5.570e-9
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 SLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            +++  ATQLL V    GL+  +G GIGAGAN+L+RFA  HPD++  L L N S+  AG  E
Sbjct:  147 TMDELATQLLFVMSHFGLKSIIGFGIGAGANILVRFALAHPDKVGALCLVNCSSTQAGWIE 207
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: A0A1J1IK55_9DIPT (CLUMA_CG013225, isoform B n=3 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1IK55_9DIPT)

HSP 1 Score: 60.1 bits (144), Expect = 5.860e-9
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 SLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            +++  ATQLL V    GL+  +G GIGAGAN+L+RFA  HPD++  L L N S+  AG  E
Sbjct:  284 TMDELATQLLFVMSHFGLKSIIGFGIGAGANILVRFALAHPDKVGALCLVNCSSTQAGWIE 344
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: A0A4Y2K2W6_ARAVE (Protein NDRG3 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2K2W6_ARAVE)

HSP 1 Score: 59.7 bits (143), Expect = 7.750e-9
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 SLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            +++  A  L+QV    GL+ F+G G+GAGAN+L RFA +HPD + G+ L NP+  +A   E
Sbjct:  111 TMDQLAETLVQVMKFYGLKHFIGFGVGAGANILSRFALEHPDCVDGMFLVNPTCTVASWTE 171
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: A0A7S2D3T3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3T3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.950e-9
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   13 SLEAQATQLLQVAIKLGLEW-FVGLGIGAGANVLLRFACDHPDRIAGLILANPS 171
            SLE    QL  +   L L+  FVG+G+GAGANVLLR+  DH D++ GLILANPS
Sbjct:  203 SLEQLTQQLNVIVTHLDLKQKFVGIGVGAGANVLLRYTADHGDKVGGLILANPS 256
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: A0A094ZE99_SCHHA (Protein NDRG3 n=9 Tax=Schistosoma TaxID=6181 RepID=A0A094ZE99_SCHHA)

HSP 1 Score: 58.2 bits (139), Expect = 2.780e-8
Identity = 23/61 (37.70%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 SLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            +++  A  +  V +  G+ +F+G G+GAG+N+L R+A  +PD++ GL L NP+A   G Y+
Sbjct:  173 NMDQLADMITSVLVHFGINYFLGFGMGAGSNILARYALRYPDQVLGLFLINPNASTHGYYQ 233
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: A0A6A5DIG7_SCHHA (NDRG4 protein (S33 family) n=2 Tax=Schistosoma TaxID=6181 RepID=A0A6A5DIG7_SCHHA)

HSP 1 Score: 58.2 bits (139), Expect = 2.830e-8
Identity = 23/61 (37.70%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 SLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            +++  A  +  V +  G+ +F+G G+GAG+N+L R+A  +PD++ GL L NP+A   G Y+
Sbjct:  163 NMDQLADMITSVLVHFGINYFLGFGMGAGSNILARYALRYPDQVLGLFLINPNASTHGYYQ 223
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: Q5DHL3_SCHJA (SJCHGC02017 protein n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5DHL3_SCHJA)

HSP 1 Score: 57.8 bits (138), Expect = 2.850e-8
Identity = 22/61 (36.07%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 SLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            +++  A  +  + +  G+ +F+G G+GAG+N+L R+A  +PD++ GL L NP+A   G Y+
Sbjct:  159 NMDQLADMITSILVHFGINYFLGFGMGAGSNILARYALRYPDQVLGLFLINPNASTHGYYQ 219
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BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Match: UPI0001A63433 (NDRG4 protein (S33 family) n=1 Tax=Schistosoma mansoni TaxID=6183 RepID=UPI0001A63433)

HSP 1 Score: 57.4 bits (137), Expect = 3.080e-8
Identity = 22/56 (39.29%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   28 ATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAGLILANPSAEIAGTYE 195
            A  +  + +  G+ +F+G G+GAG+N+L R+A  +PD++ GL L NP+A   G Y+
Sbjct:    5 ADMITSILVHFGINYFLGFGMGAGSNILARYALRYPDQVLGLFLINPNASTHGYYQ 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43498.11072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJV4_9PHAE1.060e-2478.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD96_ECTSI1.640e-2375.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1J1II89_9DIPT5.570e-949.18CLUMA_CG013225, isoform C n=1 Tax=Clunio marinus T... [more]
A0A1J1IK55_9DIPT5.860e-949.18CLUMA_CG013225, isoform B n=3 Tax=Clunio marinus T... [more]
A0A4Y2K2W6_ARAVE7.750e-944.26Protein NDRG3 n=1 Tax=Araneus ventricosus TaxID=18... [more]
A0A7S2D3T3_9STRA7.950e-957.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A094ZE99_SCHHA2.780e-837.70Protein NDRG3 n=9 Tax=Schistosoma TaxID=6181 RepID... [more]
A0A6A5DIG7_SCHHA2.830e-837.70NDRG4 protein (S33 family) n=2 Tax=Schistosoma Tax... [more]
Q5DHL3_SCHJA2.850e-836.07SJCHGC02017 protein n=1 Tax=Schistosoma japonicum ... [more]
UPI0001A634333.080e-839.29NDRG4 protein (S33 family) n=1 Tax=Schistosoma man... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43498contigH-paniculata_contig43498:1341..1538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue8e-20
Seed eggNOG ortholog2880.D8LD96
Preferred nameNDRG4
KEGG koko:K18266
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001558,GO:0001655,GO:0001666,GO:0001775,GO:0001817,GO:0001818,GO:0001822,GO:0001932,GO:0001933,GO:0001934,GO:0001947,GO:0002009,GO:0002274,GO:0002376,GO:0003007,GO:0003008,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005783,GO:0005789,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005886,GO:0005911,GO:0005912,GO:0005913,GO:0006810,GO:0006928,GO:0006950,GO:0006974,GO:0007009,GO:0007154,GO:0007165,GO:0007272,GO:0007275,GO:0007276,GO:0007283,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007422,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008017,GO:0008092,GO:0008150,GO:0008283,GO:0008285,GO:0008306,GO:0008366,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010001,GO:0010008,GO:0010035,GO:0010038,GO:0010256,GO:0010562,GO:0010563,GO:0010574,GO:0010604,GO:0010605,GO:0010640,GO:0010642,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0012505,GO:0014037,GO:0014044,GO:0014706,GO:0014855,GO:0014910,GO:0014912,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016323,GO:0016477,GO:0017016,GO:0017137,GO:0019220,GO:0019222,GO:0019899,GO:0019953,GO:0021782,GO:0022008,GO:0022011,GO:0022406,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030054,GO:0030154,GO:0030308,GO:0030330,GO:0030334,GO:0030336,GO:0030424,GO:0030426,GO:0030427,GO:0031090,GO:0031253,GO:0031267,GO:0031323,GO:0031324,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032270,GO:0032287,GO:0032292,GO:0032386,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0033002,GO:0033267,GO:0033554,GO:0035050,GO:0035239,GO:0035265,GO:0035295,GO:0035556,GO:0036293,GO:0036294,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040013,GO:0042063,GO:0042127,GO:0042175,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042552,GO:0042770,GO:0042981,GO:0042995,GO:0043005,GO:0043015,GO:0043067,GO:0043209,GO:0043217,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043408,GO:0043409,GO:0043410,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0045296,GO:0045321,GO:0045576,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045926,GO:0045936,GO:0045937,GO:0046578,GO:0046579,GO:0048232,GO:0048278,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048598,GO:0048609,GO:0048660,GO:0048662,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048793,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050839,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051049,GO:0051056,GO:0051057,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051271,GO:0051640,GO:0051641,GO:0051674,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0055017,GO:0055037,GO:0055038,GO:0060038,GO:0060255,GO:0060284,GO:0060322,GO:0060341,GO:0060419,GO:0060429,GO:0060537,GO:0060562,GO:0060627,GO:0060973,GO:0061024,GO:0061371,GO:0065007,GO:0070161,GO:0070372,GO:0070373,GO:0070374,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071840,GO:0071944,GO:0072001,GO:0072331,GO:0072359,GO:0080090,GO:0090361,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098805,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120035,GO:0120038,GO:0140056,GO:0150034,GO:1902531,GO:1902532,GO:1902533,GO:2000026,GO:2000145,GO:2000146,GO:2001135
EggNOG free text desc.nervous system development
EggNOG OGsKOG2931@1,KOG2931@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930318.7753966-CDS-H-paniculata_contig43498:1340..15381622930318.7753966-CDS-H-paniculata_contig43498:1340..1538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43498 1341..1538 -
1691481239.620771-CDS-H-paniculata_contig43498:1340..15381691481239.620771-CDS-H-paniculata_contig43498:1340..1538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43498 1341..1538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43498.11072.1prot_H-paniculata_contig43498.11072.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43498 1341..1538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43498.11072.1

>prot_H-paniculata_contig43498.11072.1 ID=prot_H-paniculata_contig43498.11072.1|Name=mRNA_H-paniculata_contig43498.11072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
AKVFSLEAQATQLLQVAIKLGLEWFVGLGIGAGANVLLRFACDHPDRIAG
LILANPSAEIAGTYE*
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mRNA from alignment at H-paniculata_contig43498:1341..1538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43498.11072.1 ID=mRNA_H-paniculata_contig43498.11072.1|Name=mRNA_H-paniculata_contig43498.11072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig43498:1341..1538- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAAGGTGTTCTCCCTGGAAGCGCAGGCCACGCAGCTCCTGCAAGTAGC
CATCAAGCTAGGGCTAGAGTGGTTCGTGGGATTGGGCATCGGCGCGGGAG
CGAATGTCCTCCTGAGGTTTGCCTGCGATCACCCCGATAGGATCGCGGGT
CTGATTTTGGCGAATCCTTCCGCGGAGATAGCGGGTACGTACGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig43498:1341..1538-

>mRNA_H-paniculata_contig43498.11072.1 ID=mRNA_H-paniculata_contig43498.11072.1|Name=mRNA_H-paniculata_contig43498.11072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig43498:1341..1538- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAAGGTGTTCTCCCTGGAAGCGCAGGCCACGCAGCTCCTGCAAGTAGC
CATCAAGCTAGGGCTAGAGTGGTTCGTGGGATTGGGCATCGGCGCGGGAG
CGAATGTCCTCCTGAGGTTTGCCTGCGATCACCCCGATAGGATCGCGGGT
CTGATTTTGGCGAATCCTTCCGCGGAGATAGCGGGTACGTACGAGTAAGC
CAAGGTGTTCTCCCTGGAAGCGCAGGCCACGCAGCTCCTGCAAGTAGCCA
TCAAGCTAGGGCTAGAGTGGTTCGTGGGATTGGGCATCGGCGCGGGAGCG
AATGTCCTCCTGAGGTTTGCCTGCGATCACCCCGATAGGATCGCGGGTCT
GATTTTGGCGAATCCTTCCGCGGAGATAGCGGGTACGTACGAGTAA
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