mRNA_H-paniculata_contig43484.11070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43484.11070.1
Unique NamemRNA_H-paniculata_contig43484.11070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43484.11070.1 vs. uniprot
Match: D7FIJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ8_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 TLKMSKDGLPWFMFGSHSLHHVAWGYLENVSSQKFLRRRPI 123
            +LKMSKDGL +F+  SHSLH +AWGYLE+ +  +  R+R +
Sbjct:  744 SLKMSKDGLAYFLLASHSLHRIAWGYLEHRNPPQRPRKRRV 784
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43484.11070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIJ8_ECTSI5.550e-753.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43484contigH-paniculata_contig43484:910..1032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size114
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930318.6247566-UTR-H-paniculata_contig43484:909..9181622930318.6247566-UTR-H-paniculata_contig43484:909..918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43484 910..918 +
1691481239.5819733-UTR-H-paniculata_contig43484:909..9181691481239.5819733-UTR-H-paniculata_contig43484:909..918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43484 910..918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930318.643305-CDS-H-paniculata_contig43484:918..10321622930318.643305-CDS-H-paniculata_contig43484:918..1032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43484 919..1032 +
1691481239.5951304-CDS-H-paniculata_contig43484:918..10321691481239.5951304-CDS-H-paniculata_contig43484:918..1032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43484 919..1032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43484.11070.1prot_H-paniculata_contig43484.11070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43484 919..1032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43484.11070.1

>prot_H-paniculata_contig43484.11070.1 ID=prot_H-paniculata_contig43484.11070.1|Name=mRNA_H-paniculata_contig43484.11070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MSKDGLPWFMFGSHSLHHVAWGYLENVSSQKFLRRRPI
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mRNA from alignment at H-paniculata_contig43484:910..1032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43484.11070.1 ID=mRNA_H-paniculata_contig43484.11070.1|Name=mRNA_H-paniculata_contig43484.11070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig43484:910..1032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCTCAAGATGAGCAAGGACGGATTGCCGTGGTTCATGTTCGGCTCGCA
CAGCCTCCACCACGTTGCATGGGGCTACCTCGAGAATGTGAGTAGTCAAA
AGTTTCTCCGTCGCCGCCCGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig43484:910..1032+

>mRNA_H-paniculata_contig43484.11070.1 ID=mRNA_H-paniculata_contig43484.11070.1|Name=mRNA_H-paniculata_contig43484.11070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig43484:910..1032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAAGGACGGATTGCCGTGGTTCATGTTCGGCTCGCACAGCCTCCA
CCACGTTGCATGGGGCTACCTCGAGAATGTGAGTAGTCAAAAGTTTCTCC
GTCGCCGCCCGATTATGAGCAAGGACGGATTGCCGTGGTTCATGTTCGGC
TCGCACAGCCTCCACCACGTTGCATGGGGCTACCTCGAGAATGTGAGTAG
TCAAAAGTTTCTCCGTCGCCGCCCGATT
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