mRNA_H-paniculata_contig43363.11056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: H3H5K9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K9_PHYRM) HSP 1 Score: 83.2 bits (204), Expect = 2.940e-16 Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
CF+CN+PGH+K +CP R + +D V G E F W+ DSGATAH+TP + +YE + + VT+A+G+ L + G G + + D+ I + V H+PGLD L S+
Sbjct: 223 CFKCNQPGHMKRDCPVRNTGGDDDAVFAVGTERFNGWLIDSGATAHMTPHRSDLVEYEALDAGMEVTIADGKKLAVAGRGTVRLLGLDQKTI---KMVDVLHIPGLDRRLLSV 332
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3GEB1_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GEB1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 3.690e-16 Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLD 330
CF+CN+PGH+K +CP+R + +D V G E W+ DSGATAH+TP + +YE + + VT+A+G+ L + G G + + D+ I + V H+PGLD
Sbjct: 116 CFKCNQPGHMKRDCPERNAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKLTVVGRGTVRLLGLDQNRI---KMVDVLHIPGLD 219
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3I090_9STRA (CCHC-type domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I090_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.870e-15 Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
CF+CN+PGH+K +CP+R + +D V G E W+ DSGATAH+TP + +YE + + VT+A+G+ + G G + D+ I + V H+ GLD L S+
Sbjct: 223 CFKCNQPGHMKRDCPERNAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRI---KMVDVLHISGLDRRLLSV 332
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6G0QKW0_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QKW0_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.870e-15 Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
CF+CN+PGH+K +CP+R + +D V G E W+ DSGATAH+TP + +YE + + VT+A+G+ + G G + D+ I + V H+ GLD L S+
Sbjct: 223 CFKCNQPGHMKRDCPERNAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRI---KMVDVLHISGLDRRLLSV 332
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3R773_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3R773_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.140e-13 Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
CF+CN+PGH+K CP R + +D V G E W+ DSGA AH T + +YE + + VT+A G+ L + G G + + D+ I + V H+PGLD L S+
Sbjct: 109 CFKCNQPGHMKRECPVRYAGGDDDAVFAVGTERLDGWLIDSGANAHTTLHRSDLLEYEPLDTTMEVTIAVGKKLTVAGRGTVRLLGLDQNRI---KMVDVFHIPGLDRRLLSV 218
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3HXA7_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HXA7_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.650e-12 Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLD 330
CF+CN+PGH+K CP R + +D V G E W+ DSGA AH T + +YE + + VT+A G+ L + G G + + D+ I + V H+PGLD
Sbjct: 109 CFKCNQPGHMKRECPVRYAGGDDDAVFAVGTERLDGWLIDSGANAHTTLHRSDLLEYEPLDTTMEVTIAVGKKLTVAGRGTVRLLGLDQNRI---KMVDVFHIPGLD 212
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.440e-12 Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQ-RLSVEEDKPVPVD-GCEEFWVADSGATAHVTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
C+ C++ GH+K +CP +S +E+ V G W+ DSGATAH+TP +F+YE N+ VT+A+G+ + + G G + + D I + V H+PGLD L S+
Sbjct: 227 CYNCDQIGHMKRDCPSSNVSNDEEAVFAVGKGRSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSV 336
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A4CJ71_9STRA (CCHC-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CJ71_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 2.890e-12 Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
CF+CN+PGH+K CP R + +D V G E W+ DSGA AH+T + +YE + + VT+A G+ L + G G + + D+ I + V +PGLD L S+
Sbjct: 222 CFKCNQPGHMKRECPVRYAGGDDDAVFAVGTERLDGWLIDSGANAHMTLHRSDLLEYEPLDTTMEVTIAVGKKLTVAGRGTVRLLGLDQNRI---KMVDVFQIPGLDRRLLSV 331
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.160e-12 Identity = 39/114 (34.21%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEE-DKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
CF C + GH+K +CP +++ + D V G + W+ DSGATAH+TP + +F+Y S +++VT+A+G+ + + G G + + D I + V ++PGLD L S+
Sbjct: 208 CFNCGQAGHMKRDCPVKVNGDSNDDSVFAIGEDRSAEWLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSV 318
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 6.220e-12 Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
CF C + GH+K +CP+ + ++D V G W+ DSGATAH+TP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+
Sbjct: 230 CFNCGQMGHMKRDCPEPNAGKDDDAVFAVGKSRSAGWLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSV 339 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43363.11056.1 >prot_H-paniculata_contig43363.11056.1 ID=prot_H-paniculata_contig43363.11056.1|Name=mRNA_H-paniculata_contig43363.11056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp VAEIRVCFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEFWVADSGATAHback to top mRNA from alignment at H-paniculata_contig43363:556..1046+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43363.11056.1 ID=mRNA_H-paniculata_contig43363.11056.1|Name=mRNA_H-paniculata_contig43363.11056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=491bp|location=Sequence derived from alignment at H-paniculata_contig43363:556..1046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43363:556..1046+ >mRNA_H-paniculata_contig43363.11056.1 ID=mRNA_H-paniculata_contig43363.11056.1|Name=mRNA_H-paniculata_contig43363.11056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig43363:556..1046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |