mRNA_H-paniculata_contig43363.11056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43363.11056.1
Unique NamemRNA_H-paniculata_contig43363.11056.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: H3H5K9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K9_PHYRM)

HSP 1 Score: 83.2 bits (204), Expect = 2.940e-16
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
            CF+CN+PGH+K +CP R +  +D  V   G E F  W+ DSGATAH+TP    + +YE   + + VT+A+G+ L + G G + +   D+  I    +  V H+PGLD  L S+
Sbjct:  223 CFKCNQPGHMKRDCPVRNTGGDDDAVFAVGTERFNGWLIDSGATAHMTPHRSDLVEYEALDAGMEVTIADGKKLAVAGRGTVRLLGLDQKTI---KMVDVLHIPGLDRRLLSV 332          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3GEB1_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GEB1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.690e-16
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLD 330
            CF+CN+PGH+K +CP+R +  +D  V   G E    W+ DSGATAH+TP    + +YE   + + VT+A+G+ L + G G + +   D+  I    +  V H+PGLD
Sbjct:  116 CFKCNQPGHMKRDCPERNAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKLTVVGRGTVRLLGLDQNRI---KMVDVLHIPGLD 219          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3I090_9STRA (CCHC-type domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I090_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.870e-15
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
            CF+CN+PGH+K +CP+R +  +D  V   G E    W+ DSGATAH+TP    + +YE   + + VT+A+G+   + G G   +   D+  I    +  V H+ GLD  L S+
Sbjct:  223 CFKCNQPGHMKRDCPERNAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRI---KMVDVLHISGLDRRLLSV 332          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6G0QKW0_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QKW0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.870e-15
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
            CF+CN+PGH+K +CP+R +  +D  V   G E    W+ DSGATAH+TP    + +YE   + + VT+A+G+   + G G   +   D+  I    +  V H+ GLD  L S+
Sbjct:  223 CFKCNQPGHMKRDCPERNAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRI---KMVDVLHISGLDRRLLSV 332          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3R773_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3R773_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.140e-13
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
            CF+CN+PGH+K  CP R +  +D  V   G E    W+ DSGA AH T     + +YE   + + VT+A G+ L + G G + +   D+  I    +  V H+PGLD  L S+
Sbjct:  109 CFKCNQPGHMKRECPVRYAGGDDDAVFAVGTERLDGWLIDSGANAHTTLHRSDLLEYEPLDTTMEVTIAVGKKLTVAGRGTVRLLGLDQNRI---KMVDVFHIPGLDRRLLSV 218          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3HXA7_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HXA7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.650e-12
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLD 330
            CF+CN+PGH+K  CP R +  +D  V   G E    W+ DSGA AH T     + +YE   + + VT+A G+ L + G G + +   D+  I    +  V H+PGLD
Sbjct:  109 CFKCNQPGHMKRECPVRYAGGDDDAVFAVGTERLDGWLIDSGANAHTTLHRSDLLEYEPLDTTMEVTIAVGKKLTVAGRGTVRLLGLDQNRI---KMVDVFHIPGLD 212          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.440e-12
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQ-RLSVEEDKPVPVD-GCEEFWVADSGATAHVTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
            C+ C++ GH+K +CP   +S +E+    V  G    W+ DSGATAH+TP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+
Sbjct:  227 CYNCDQIGHMKRDCPSSNVSNDEEAVFAVGKGRSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSV 336          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A4CJ71_9STRA (CCHC-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CJ71_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.890e-12
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
            CF+CN+PGH+K  CP R +  +D  V   G E    W+ DSGA AH+T     + +YE   + + VT+A G+ L + G G + +   D+  I    +  V  +PGLD  L S+
Sbjct:  222 CFKCNQPGHMKRECPVRYAGGDDDAVFAVGTERLDGWLIDSGANAHMTLHRSDLLEYEPLDTTMEVTIAVGKKLTVAGRGTVRLLGLDQNRI---KMVDVFQIPGLDRRLLSV 331          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.160e-12
Identity = 39/114 (34.21%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEE-DKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
            CF C + GH+K +CP +++ +  D  V   G +    W+ DSGATAH+TP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+
Sbjct:  208 CFNCGQAGHMKRDCPVKVNGDSNDDSVFAIGEDRSAEWLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSV 318          
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.220e-12
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   19 CFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEF--WVADSGATAHVTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 348
            CF C + GH+K +CP+  + ++D  V   G      W+ DSGATAH+TP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+
Sbjct:  230 CFNCGQMGHMKRDCPEPNAGKDDDAVFAVGKSRSAGWLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSV 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43363.11056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H5K9_PHYRM2.940e-1639.82Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3GEB1_9STRA3.690e-1639.25CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
A0A6A3I090_9STRA4.870e-1537.17CCHC-type domain-containing protein n=8 Tax=Phytop... [more]
A0A6G0QKW0_9STRA4.870e-1537.17CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
A0A6A3R773_9STRA2.140e-1337.17CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A6A3HXA7_9STRA1.650e-1237.38CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A329SN38_9STRA2.440e-1236.28Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A6A4CJ71_9STRA2.890e-1236.28CCHC-type domain-containing protein n=9 Tax=Phytop... [more]
A0A225UGS0_9STRA5.160e-1234.21Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3X5U6_9STRA6.220e-1235.40CCHC-type domain-containing protein n=5 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43363contigH-paniculata_contig43363:556..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3e-14
Seed eggNOG ortholog164328.Phyra85925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QI8W@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930316.8061178-CDS-H-paniculata_contig43363:555..6281622930316.8061178-CDS-H-paniculata_contig43363:555..628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43363 556..628 +
1691481238.803591-CDS-H-paniculata_contig43363:555..6281691481238.803591-CDS-H-paniculata_contig43363:555..628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43363 556..628 +
1622930316.8198264-CDS-H-paniculata_contig43363:771..10461622930316.8198264-CDS-H-paniculata_contig43363:771..1046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43363 772..1046 +
1691481238.834618-CDS-H-paniculata_contig43363:771..10461691481238.834618-CDS-H-paniculata_contig43363:771..1046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43363 772..1046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43363.11056.1prot_H-paniculata_contig43363.11056.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43363 556..1046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43363.11056.1

>prot_H-paniculata_contig43363.11056.1 ID=prot_H-paniculata_contig43363.11056.1|Name=mRNA_H-paniculata_contig43363.11056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
VAEIRVCFQCNEPGHLKMNCPQRLSVEEDKPVPVDGCEEFWVADSGATAH
VTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMFVWMKDRGEIHKFSL
SRVAHVPGLDTNLFSL
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mRNA from alignment at H-paniculata_contig43363:556..1046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43363.11056.1 ID=mRNA_H-paniculata_contig43363.11056.1|Name=mRNA_H-paniculata_contig43363.11056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=491bp|location=Sequence derived from alignment at H-paniculata_contig43363:556..1046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCTGAAATTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAA GATGAATTGTCCTCAGCGCCTATGTCCGATCTGCAAAGGGATCGGTCATG GCGAGAGCAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGGTTCAGG GACATTGTTGAACACGGTTTCACGGCCAGAGTGGCGGGGCAGGGCGAGTT TGCTTCGGTAATTGAGCTGTTGAAGAGGACAAGCCAGTACCAGTAGATGG TTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCGACGGCCCACGTGACTC CGTCTAACGAATTGATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTG ACGGTGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGATGTT CGTGTGGATGAAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTG TAGCGCATGTTCCGGGCCTGGACACGAATTTGTTTTCCCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig43363:556..1046+

>mRNA_H-paniculata_contig43363.11056.1 ID=mRNA_H-paniculata_contig43363.11056.1|Name=mRNA_H-paniculata_contig43363.11056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig43363:556..1046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCTGAAATTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAA
GATGAATTGTCCTCAGCGCCTATGTCGCTGAAATTCGTGTTTGTTTTCAA
TGTAATGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCGCCTATCTGT
TGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGGTGG
CCGACAGTGGGGCGACGGCCCACGTGACTCCGTCTAACGAATTGATGTTT
GATTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAAC
GCTTCCGATTGAGGGATATGGTAAGATGTTCGTGTGGATGAAGGATCGGG
GCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTG
GACACGAATTTGTTTTCCCTACTGTTGAAGAGGACAAGCCAGTACCAGTA
GATGGTTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCGACGGCCCACGT
GACTCCGTCTAACGAATTGATGTTTGATTACGAAACCTGCAGTAATTTGT
TTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAG
ATGTTCGTGTGGATGAAGGATCGGGGCGAGATACACAAATTCAGCTTGAG
TCGTGTAGCGCATGTTCCGGGCCTGGACACGAATTTGTTTTCCCTA
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