mRNA_H-paniculata_contig433.11042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig433.11042.1 vs. uniprot
Match: D7FMX2_ECTSI (Myosin heavy chain, class XI n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX2_ECTSI) HSP 1 Score: 627 bits (1617), Expect = 9.260e-213 Identity = 346/712 (48.60%), Postives = 448/712 (62.92%), Query Frame = 1
Query: 1 PKMSGAALTEAVEAYQRCLSLPISSTYAPHDAKRARQAQIKSHLGLARLDFVRGDSRSVHAALVRLSNILGEHPYSDIVEEVIYLTATGQSALPVSEQNASTKKGTLEFLEYLGEGYAPSQEGAPTAMFEPSWDTARETKPEGESKSRCRTMNESRAEGDGLYVIGLPTWSLQFQIALSALNIGDSTRAMAAMENSFLCYETWLPRYVAFPAKGEMLPSDDEGSADADRLRRVWFNGVPNWSAWVQHPRPWLDMGDILFRKGPGCFHVAAEIYAEALRTGEDVLSTERQASISFRIAKCLSRCGNTAGAIAGVERLINNHNFWDNRYRSVRFSNRRRCGKDSGSGGVLASLDKIITHWQASCWNAWVLHHAMVAREVAAARVQALFRGANGRAVAKSILCDRQARDRLETLVELMGIACVNRRCIWRLKIHAVFRRRERAATTIQGTVRGATGRAIAIDERNRRRQIAELLLKTLRCLGGPVIEEWHAVAHELARNRMATKIQNRWRTSRAQNQWASMQTKINRAVSMGREAMGRNQTTQKRHIMNTWKTVVLEHKVKVAQQLARTWLAKRRLSRNRSQKKKAQELLMRVMKSSHRKCFVALVRNRTFCRKHKSAAVLNIQCLYRCRLAIRRAVEANAYSVLLSIAYETADRYRTRRLFQR----WREKLHREKAVIKLQSLWRGWQGRLTAAWARDREIRFEIFSATLCTV 2124
P AL EA EAY+RC L + R ++++ +GLARLDFV GD S+ +AL RL+ IL +HPYS +EEVIY A +A P ++Q+ +T G LE+L+YL + YAPS+EGAPTAM P WD A E + + + R +G GL V GLP W+LQFQI L A +G+STR M MEN+F YE WLPR ++G+ ++G+ D D +RR W+NG+P+W+AWVQHPR WLD+GDI +R+G GCFHVAAE Y AL+ ++ ++Q SI++RIAKC SRCG+ AGA++G+E L+ HNFW RYR+ + R +D VLA K+I ++Q CW W HH MV + AAA++QAL RG RAV + IL R++RD LE LVE M C+ RR + RL + RRERAATTIQ RG GR A DERNR+ +I ELLL LR LG PV EW+ AH L R RM+ KIQ+RWRT RA +TK++RA MG A+GRNQ KR ++ TWK +VLE KV Q +AR WLAKR +SR R ++K+ + L MRV K R+CFVAL RNRT CRK+K A VL IQC +RCR AI A Y + AY+T RRL R WRE + ++KA K+Q+ WRGW+GRL AAW +DRE+RFE F+ L V
Sbjct: 11 PHQRDEALAEAREAYRRCAEL---------EGPRGENIKVQAQVGLARLDFVVGDPASIRSALARLAEILRDHPYSQHIEEVIYFLAV-PAAFPQTKQSTATATGALEYLDYLRDSYAPSREGAPTAMMYPRWD-APEQEVRDSERDGIVPGDAERWQGKGLQVHGLPAWALQFQIGLLASRLGNSTRGMETMENAFTSYEAWLPR-----SRGQF----NDGAPDVDAIRRSWYNGLPHWTAWVQHPRTWLDLGDIAYRQGVGCFHVAAEAYRGALKRAGNLFPPDQQESIAYRIAKCCSRCGDLAGAVSGIEELLYTHNFWSERYRACARAVIARSARDFREAIVLAHASKLIRNFQVVCWKHWKQHHDMVRLDKAAAQIQALLRGTKARAVVRFILAARKSRDLLEQLVENMHDKCIARRVLRRLSKQVMVGRRERAATTIQAMARGVVGRETASDERNRQARINELLLNALRRLGTPVFREWYKAAHSLRRARMSIKIQSRWRTFRAMRALTLTKTKVSRAHEMGILAIGRNQLADKRRVVETWKHLVLERKVVAVQGMARIWLAKRVMSRGRVRQKELRRLFMRVTKPIRRQCFVALARNRTTCRKNKKALVLVIQCWWRCRHAIGTTRRAREYRKAIHGAYDTVVTNHERRLLTRCCREWRENIPKQKAATKIQAAWRGWEGRLRAAWFKDREVRFEEFAQVLRAV 702
BLAST of mRNA_H-paniculata_contig433.11042.1 vs. uniprot
Match: A0A6H5KW86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW86_9PHAE) HSP 1 Score: 498 bits (1283), Expect = 2.460e-163 Identity = 304/700 (43.43%), Postives = 393/700 (56.14%), Query Frame = 1
Query: 91 DAKRARQAQIKSHLGLARLDFVRGDSRSVHAALVRLSNILGEHPYSDIVEEVIYLTATGQSALPVSEQNASTKKGTLEFLEYLGEGYAPSQEGAPTAMFEPSWDTARETKPEGESKSRCRTMNESRAEGDGLYVIGLPTWSLQFQIALSALNIGDSTRAMAAMENSFLCYETWLPR---YVAFPAKGEMLPS--------DDEGSADADRLRRVWFNGVPNWSAWVQHPRPWLDMGDILFRKGPGCFHVAAEIYAEALRTGEDVLSTERQASISFRIAKCLSRCGNTAGAIAGVERLINNHNFWDNRYRSVRFSNRRRCGKDSGSGGVLASLDKIITHWQASCWNAWVLHHAMVAREVAAARVQALFRGANGRAVAKSILCDRQAR-------DRLETLVELMGIACVNRRCIWRLKIHAVFRRRERAATTIQGTVRGATGRAIAIDERNRRRQIAELLLKTLRCLGGPVIEEWHAVAHELARNRMATKIQNRWRTSRAQNQWASMQTKINRAVSMGREAMGRNQTTQKRHIMNTWKTVVLEHKVKVAQQLARTWLAKRRLSRNRSQKKKAQELLMRVMKSSHRKCFVALVRNRTFCRKHKSAAVLNIQCLYRCRLAIRRAVEANAYSVLLSIAYETADRYRTRRLFQR----WREKLHREKAVIKLQSLWRGWQGRLTAAWARDREIRFEIFSATLCTV 2124
+ R ++++ +GLARLDFV GD S+ + L RL+ +L +HPYS +EEVIY A +A P +EQ+ +T LE+L+YL + Y PS+EGAPTAM P WDT + + E E R +G L V GLP W+LQFQ+ L A +GDSTR M MEN+F YE WLPR Y A + S ++G+ D D +RR W++G+P+W+AWVQHP A+R+ + Q SI+FRIAKC SRCG+ AGAI+G+E L+ NFW RYR+ + R +D VLA K+I +QA L RG RAV + IL RQ+R D LE LVE M C+ RR + RL RRERAATT+Q RG GR IA DERNRR +I ELLL LR LG PV EW+ AH L R RM+ K+Q+RWRT RA +TK++RA MG A+GRNQ KR ++ TWK +VLE KV Q +AR WLAKR +SR R ++++ + L MRV K R+CFVAL RNRT CRK+K A VL IQC +RCR AI A + + AY+T RRL R WRE + ++KA K+Q+ WRGW+GRL AAW +DRE+RFE F+ L V
Sbjct: 11 EGPRGENIKVQAQVGLARLDFVVGDPASIRSGLARLAEVLRDHPYSQHIEEVIYFLAI-PAAFPQTEQSTATAMRALEYLDYLRDSYTPSREGAPTAMMYPRWDTPEQEVCDSERDGMVPGDAE-RWQGRELQVHGLPAWALQFQMGLLASRLGDSTRGMETMENAFTSYEAWLPRCDRYTADMGSSSLRISLCAWSRVQFNDGTPDVDAVRRSWYHGLPHWTAWVQHP--------------------------SAVRSSRHLA----QESIAFRIAKCCSRCGDLAGAISGIEELLYTRNFWSERYRACARAVIARSARDFQEAIVLAHASKLIRSFQA------------------------LLRGTKARAVVRFILAARQSRGDQVYGTDLLEQLVENMHDKCLARRVLRRLSKQVTVGRRERAATTVQAMARGVVGREIACDERNRRARINELLLNALRRLGTPVFREWYKAAHNLRRARMSIKVQSRWRTFRAMRALTLTKTKVSRAHEMGILAIGRNQLADKRGVVETWKHIVLERKVVAVQGMARIWLAKRVMSRRRVRQEELRRLFMRVTKPIRRQCFVALARNRTTCRKNKKAMVLVIQCWWRCRHAIGTTRRAREHRNAIHSAYDTVVTNHERRLLIRCCREWRENIPKQKAATKMQAAWRGWEGRLRAAWFKDREVRFEEFAQVLRAV 654 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig433.11042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig433.11042.1 >prot_H-paniculata_contig433.11042.1 ID=prot_H-paniculata_contig433.11042.1|Name=mRNA_H-paniculata_contig433.11042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=707bp MSGAALTEAVEAYQRCLSLPISSTYAPHDAKRARQAQIKSHLGLARLDFVback to top mRNA from alignment at H-paniculata_contig433:14245..24485- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig433.11042.1 ID=mRNA_H-paniculata_contig433.11042.1|Name=mRNA_H-paniculata_contig433.11042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10241bp|location=Sequence derived from alignment at H-paniculata_contig433:14245..24485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig433:14245..24485- >mRNA_H-paniculata_contig433.11042.1 ID=mRNA_H-paniculata_contig433.11042.1|Name=mRNA_H-paniculata_contig433.11042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4242bp|location=Sequence derived from alignment at H-paniculata_contig433:14245..24485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |