prot_H-paniculata_contig43274.11039.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig43274.11039.1
Unique Nameprot_H-paniculata_contig43274.11039.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length238
Homology
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: UPI0007382E13 (uncharacterized protein LOC107046765 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007382E13)

HSP 1 Score: 92.4 bits (228), Expect = 7.850e-18
Identity = 66/220 (30.00%), Postives = 106/220 (48.18%), Query Frame = 0
Query:   19 SKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTGKEVKGLRLFSKDCTTPKNNEKRQQVVDTKLLRERLGHV-RDFPTVARQ---QGTRLSGK--LGVCSACEKGKASKQPVKKVSRRANDRAALWALKQFERDVARANGLRIKRLRSDQGGEYT 232
            S ++  W++DSG A  H++PQR++F+NFRQ     IVTA E  L+ +G GD+E  +        ++  +V+YVP A+ ++LS+    +Q +  AK     E  G+     D     +  +     D  L   RLGH+ R +  + +     G     +  +  C  C KGK  ++P +   RR+        LK+F     R  G ++K LR+D G EY 
Sbjct:  292 SITNADWVIDSG-ASSHISPQREVFRNFRQQAAVGIVTADETVLEADGIGDIEVPVCMNGEPTTLLVRDVLYVPRAATNLLSINNNDNQVIAIAK-----ETCGIYKLDVDRQIVYHVSQSTTTDDGILWHRRLGHLNRGYMKLLKNVLATGVEYDERTIINPCDDCVKGKQHREPFQPSHRRSRKNQVAKKLKEFIGFYERQTGEKVKTLRTDNGTEYV 505          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A6A2ZTQ6_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZTQ6_HIBSY)

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-11
Identity = 63/236 (26.69%), Postives = 108/236 (45.76%), Query Frame = 0
Query:   18 SSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTGKEVKGLRLFSKDCTTPKNNEKRQQV--------VDTKLLRERLGHVRDFPTVARQQGTRLSGKLGVCSACEKGKASKQPVKKVSRRANDRAALWALK---------QFERDVARANGLRIKRLRSDQGGEYTGKPF 236
            S+     W++DS C+ HH+TP R+ F +F+++    + TA    LD  G G +   +   +G+IR +   V YVP+   +++SVG + S+ ++   +D       +R+ S      K   KR  V        V T  +           T +R      + KL  C  C KGK ++  VK  +   + +  ++ +K         ++++ +    G +IKRLR+D GGEY   PF
Sbjct:  228 STSCSSSWLLDSACS-HHMTPNREWFFDFKELKGGIVYTANNSPLDTLGIGSIR--LRNQDGSIRTL-TGVHYVPDLMRNLISVGTLESKGLEVRAKDGI-----MRIISGALVIMKGIRKRNNVYYFLGSTIVGTAAVAASTDEQESEATRSRIIEGARACKLAFCEHCIKGKKTR--VKFGTAIHDTKVWVYPMKTKEVLGFFLKWKKMMETQTGRKIKRLRTDNGGEYKNDPF 452          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A6A3BUJ7_HIBSY (Photosystem II reaction center Psb28 protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BUJ7_HIBSY)

HSP 1 Score: 65.1 bits (157), Expect = 1.860e-8
Identity = 63/244 (25.82%), Postives = 108/244 (44.26%), Query Frame = 0
Query:   25 WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRD-TGKEVKGLRLFSKDCTTPKN-----------------NEKRQQVVDTKLLRERLGHVRDFPTVARQQGTRLSG----KLGVCSACEKGKASKQPVKKVSRRANDRAALWALKQ----------FERDVARANGLRIKRLRSDQGGEYTGKPF 236
            W +D  C+ HH+TP R+ F +F+++    + T     LD  G G +   +   +G+IR +  +V YVP+   +++SVG + S+ ++   +D   + + G  +  K      N                 +   Q+   T+L   RLGHV +           L+G    KL  C  C KGK  K  VK  +   + +  ++ +K+          +++ V    G +IKRLR++ GGEY    F
Sbjct:  291 WPLDLTCS-HHMTPTREWFFDFKELKGGIVYTTNNSPLDTLGIGSIR--LRNQDGSIRTL-TSVHYVPDLMRNLISVGTLESKGLEMRAKDGIMRIISGALVIMKGIRKRNNVYYFLGSIIVETAVVAASTDEQESEATRLWHMRLGHVSEKSLKLLIDQGLLNGARACKLVFCEHCIKGK--KMRVKFGTSIHDTKEWVYTMKKKDEVLGFFLKWKKMVETQTGRKIKRLRTNNGGEYKNDQF 528          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438JGD9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JGD9_VITVI)

HSP 1 Score: 64.7 bits (156), Expect = 2.340e-8
Identity = 69/250 (27.60%), Postives = 102/250 (40.80%), Query Frame = 0
Query:   25 WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAA------LW------ALKQFERDVARANGLRIKRLRSDQGGEYTGKPF 236
            W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG+R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL         +C +C  GK  K    K  R             LW      +L + E  V    GL++K LRSD GGEY    F
Sbjct:  286 WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGVRVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGEVEGMVETETGLKVKCLRSDNGGEYIDGGF 519          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438EJ23_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EJ23_VITVI)

HSP 1 Score: 63.9 bits (154), Expect = 4.210e-8
Identity = 68/253 (26.88%), Postives = 102/253 (40.32%), Query Frame = 0
Query:   25 WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDR---------------AALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPF 236
            W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL         +C +C  GK  K    K  R                    A+L   K+++  V    GL++K LRSD GGEY    F
Sbjct:  200 WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVASLRRFKKWKAMVETETGLKVKCLRSDNGGEYIDGGF 436          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438H6F1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H6F1_VITVI)

HSP 1 Score: 63.9 bits (154), Expect = 4.590e-8
Identity = 68/253 (26.88%), Postives = 102/253 (40.32%), Query Frame = 0
Query:   25 WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAA------LWA---------LKQFERDVARANGLRIKRLRSDQGGEYTGKPF 236
            W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL         +C +C  GK  K    K+ R             LW           K+++  V    GL++K LRSD GGEY    F
Sbjct:  240 WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKIGRTPKAEKLELVHTDLWGPSPVASPRRFKKWKAMVETETGLKVKCLRSDNGGEYIDGGF 476          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A5BJP3_VITVI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BJP3_VITVI)

HSP 1 Score: 63.5 bits (153), Expect = 6.340e-8
Identity = 63/236 (26.69%), Postives = 107/236 (45.34%), Query Frame = 0
Query:   25 WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTG-KEVKGLRLFSKDCTTPKNNEKRQQVVDT----KLLRERLGHVRDFPTVARQQGTRLSG----KLGVCSACEKGKASKQPVKKV--SRRANDRAA-LWA------------LKQFERDVARANGLRIKRLRSDQGGEYTGKPF 236
            W++DSG A  H TP++D F ++       +    +G     G GDV   + T+ G + +   NV ++P+   +++S+G++  +      RD+  K  +G      D +          VVD     +L   RLGH+ +   +   +   LSG     L  C+ C  GK ++   K +  +R+  D +  +W              KQF   V R +G ++K +R+D GGEY+G PF
Sbjct:  161 WVIDSG-ASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDV--CLETSNGTM-LTLKNVKHIPDIRMNLISIGKLDDEGFCNTFRDSQWKLTRGSMARVIDSSI--------NVVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSGMKKGSLKRCAHCLAGKQTRVAFKTLHHTRKPGDHSRKIWVYTLKTKYQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSG-PF 383          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A5C6L3_VITVI (CCHC-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C6L3_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 1.130e-7
Identity = 63/237 (26.58%), Postives = 99/237 (41.77%), Query Frame = 0
Query:   25 WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKLGVCSACEKGKASKQPVKKVSRRA-------NDRAALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPF 236
            W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL    + +     K  ++K  +R        N        K+++  V    GL++K LRSD GGEY    F
Sbjct:  286 WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLXRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCEKLHLRKAKKRKVWVYFLKNKSDVFVTFKKWKVMVETETGLKVKCLRSDNGGEYIDGGF 506          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438D4U2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D4U2_VITVI)

HSP 1 Score: 62.4 bits (150), Expect = 1.440e-7
Identity = 63/233 (27.04%), Postives = 93/233 (39.91%), Query Frame = 0
Query:   25 WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRLSGKLGVCSACEKGKASKQPVKKVSRRANDRAALW------ALKQFERDVARANGLRIKRLRSDQGGEYTGKPF 236
            W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+ +                G+     KGK  +    K  +       LW      +L + E  V    GL++K LRSD GGEY    F
Sbjct:   95 WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHMSE---------------KGMKMLLSKGKLPELKTPKAEKLELVHTDLWGPSPVASLGEVEGMVETETGLKVKCLRSDNGGEYIDGGF 303          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438CHE4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CHE4_VITVI)

HSP 1 Score: 62.4 bits (150), Expect = 1.470e-7
Identity = 64/238 (26.89%), Postives = 100/238 (42.02%), Query Frame = 0
Query:   25 WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPF 236
            W++DSG A    TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL         +C +C  GK  K+      +  +D       K+++  V    GL++K LRSD GGEY    F
Sbjct:   47 WVLDSG-ASFDTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGFVWLLE--------KVRHIPDLMRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTDTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKKVWVYFLKNKSD--VFVTFKKWKAMVETETGLKVKCLRSDNGGEYIDGGF 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0007382E137.850e-1830.00uncharacterized protein LOC107046765 n=1 Tax=Diach... [more]
A0A6A2ZTQ6_HIBSY1.300e-1126.69Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3BUJ7_HIBSY1.860e-825.82Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A438JGD9_VITVI2.340e-827.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EJ23_VITVI4.210e-826.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A438H6F1_VITVI4.590e-826.88Retrovirus-related Pol polyprotein from transposon... [more]
A5BJP3_VITVI6.340e-826.69Integrase catalytic domain-containing protein (Fra... [more]
A5C6L3_VITVI1.130e-726.58CCHC-type domain-containing protein n=1 Tax=Vitis ... [more]
A0A438D4U2_VITVI1.440e-727.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CHE4_VITVI1.470e-726.89Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43274contigH-paniculata_contig43274:457..1420 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43274.11039.1mRNA_H-paniculata_contig43274.11039.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig43274 295..1572 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig43274.11039.1 ID=prot_H-paniculata_contig43274.11039.1|Name=mRNA_H-paniculata_contig43274.11039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVV
RSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILS
VGRMVSQRVQAAKRDTGKEVKGLRLFSKDCTTPKNNEKRQQVVDTKLLRE
RLGHVRDFPTVARQQGTRLSGKLGVCSACEKGKASKQPVKKVSRRANDRA
ALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*
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