mRNA_H-paniculata_contig4325.11035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4325.11035.1
Unique NamemRNA_H-paniculata_contig4325.11035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4325.11035.1 vs. uniprot
Match: D7FHZ0_ECTSI (Phosphorylated adapter RNA export protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHZ0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 6.890e-24
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 QEAGGMPTVDGARKRTAGGVFFTLLKQHMEPARLKALYADEVRVKKERERKRRATNKRKAEMEDAGDE 204
            QE GGMPT DG+RKRTAGGVFFTLLK+HMEP+RLK LYADE+RVKKE++R RRA NKRKAE   AG++
Sbjct:  243 QETGGMPTADGSRKRTAGGVFFTLLKKHMEPSRLKELYADELRVKKEKDRARRAANKRKAEAALAGED 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4325.11035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHZ0_ECTSI6.890e-2476.47Phosphorylated adapter RNA export protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4325contigH-paniculata_contig4325:15428..15640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D7FHZ0
KEGG koko:K14291
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.snRNA export from nucleus
EggNOG OGsKOG3948@1,KOG3948@2759
Ec32 ortholog descriptionPhosphorylated adapter RNA export protein, RNA-binding domain
Ec32 orthologEc-12_006420.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size213
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930313.533931-CDS-H-paniculata_contig4325:15427..156251622930313.533931-CDS-H-paniculata_contig4325:15427..15625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4325 15428..15625 -
1691481237.4086354-CDS-H-paniculata_contig4325:15427..156251691481237.4086354-CDS-H-paniculata_contig4325:15427..15625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4325 15428..15625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930313.5524285-UTR-H-paniculata_contig4325:15625..156401622930313.5524285-UTR-H-paniculata_contig4325:15625..15640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4325 15626..15640 -
1691481237.4196804-UTR-H-paniculata_contig4325:15625..156401691481237.4196804-UTR-H-paniculata_contig4325:15625..15640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4325 15626..15640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4325.11035.1prot_H-paniculata_contig4325.11035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4325 15428..15625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4325.11035.1

>prot_H-paniculata_contig4325.11035.1 ID=prot_H-paniculata_contig4325.11035.1|Name=mRNA_H-paniculata_contig4325.11035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MPTVDGARKRTAGGVFFTLLKQHMEPARLKALYADEVRVKKERERKRRAT
NKRKAEMEDAGDEAPL
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mRNA from alignment at H-paniculata_contig4325:15428..15640-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4325.11035.1 ID=mRNA_H-paniculata_contig4325.11035.1|Name=mRNA_H-paniculata_contig4325.11035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig4325:15428..15640- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAGCAGGAGGCATGCCCACGGTCGACGGTGCCCGAAAACGCACTGC
AGGAGGCGTATTTTTTACTCTTCTCAAGCAGCACATGGAACCCGCACGAC
TGAAAGCCCTCTACGCTGACGAGGTACGCGTCAAGAAAGAGAGGGAACGG
AAGCGCCGCGCCACCAACAAACGCAAGGCTGAGATGGAAGACGCGGGGGA
CGAGGCGCCTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4325:15428..15640-

>mRNA_H-paniculata_contig4325.11035.1 ID=mRNA_H-paniculata_contig4325.11035.1|Name=mRNA_H-paniculata_contig4325.11035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig4325:15428..15640- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCACGGTCGACGGTGCCCGAAAACGCACTGCAGGAGGCGTATTTTT
TACTCTTCTCAAGCAGCACATGGAACCCGCACGACTGAAAGCCCTCTACG
CTGACGAGGTACGCGTCAAGAAAGAGAGGGAACGGAAGCGCCGCGCCACC
AACAAACGCAAGGCTGAGATGGAAGACGCGGGGGACGAGGCGCCTCTGAT
GCCCACGGTCGACGGTGCCCGAAAACGCACTGCAGGAGGCGTATTTTTTA
CTCTTCTCAAGCAGCACATGGAACCCGCACGACTGAAAGCCCTCTACGCT
GACGAGGTACGCGTCAAGAAAGAGAGGGAACGGAAGCGCCGCGCCACCAA
CAAACGCAAGGCTGAGATGGAAGACGCGGGGGACGAGGCGCCTCTG
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