mRNA_H-paniculata_contig4318.11022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4318.11022.1
Unique NamemRNA_H-paniculata_contig4318.11022.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4318.11022.1 vs. uniprot
Match: D7G7T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.210e-44
Identity = 79/137 (57.66%), Postives = 106/137 (77.37%), Query Frame = 2 
Query:  227 FKLFRARYPLEGAPEFARLHVAVIVQDISSNAEEA----SDQKIDGKARPTLLLYDFLPQEPTALKTTTRLLLGRDVAGNLRERELRRLPRGAVFVGDTNATLKEMRHFVSTYPDRLSLVSNSCVTFVDAFIAQHRI 625
            FK+F+ARYPLEG P   +LH+A+IV+D  S  E+     S+ +  G+    L+L+DFLP+EPTA +TT RLL G DV GNLRERELR LP G+V+VG+++AT+ +MR FV+ YPDRLSLVSN+C +FVDAF+A+HR+
Sbjct:   47 FKMFKARYPLEGGPPQVKLHIAIIVEDSRSTGEKGGRPNSEDRDTGRR---LVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRL 180
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BLAST of mRNA_H-paniculata_contig4318.11022.1 vs. uniprot
Match: I0Z984_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z984_COCSC)

HSP 1 Score: 58.5 bits (140), Expect = 4.050e-7
Identity = 41/136 (30.15%), Postives = 67/136 (49.26%), Query Frame = 2 
Query:  296 IVQDISSNAEEAS--------DQKIDGKARPTLLLYDFLPQEPTALKTTTRLLLGRDVAGNLRERELRRLPRGAV-FVGDTNA--TLKEMRHFVSTYPDRLSLVSNSCVTFVDAFIAQHRIG*TKHYNSMMRAGRW 670
            ++Q + S AE+ +        +++  G   P+  ++DFLP +  AL+TT  L+ G  V G LRER+LRRLPR     +G+      ++  R F   +P  L L+ N C +   A +  H  G T     ++   R+
Sbjct:    7 MLQTLGSRAEDVAAVHTMAIIEEQAPGADAPSYTVFDFLPADAMALRTTATLMAGGSVKGILRERQLRRLPRRRCSLIGEATVPEAMQMARCFNEIWPCELKLLVNDCHSHTAALV-HHLTGQTITIEKILPLQRY 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4318.11022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7T2_ECTSI1.210e-4457.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I0Z984_COCSC4.050e-730.15Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4318contigH-paniculata_contig4318:9562..11749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_000390.1
Exons2
Model size825
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4318.11022.1prot_H-paniculata_contig4318.11022.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4318 9632..11555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.7111528-UTR-H-paniculata_contig4318:9561..96311622930311.7111528-UTR-H-paniculata_contig4318:9561..9631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4318 9562..9631 +
1691481236.6168935-UTR-H-paniculata_contig4318:9561..96311691481236.6168935-UTR-H-paniculata_contig4318:9561..9631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4318 9562..9631 +
1622930311.7647257-UTR-H-paniculata_contig4318:11555..117491622930311.7647257-UTR-H-paniculata_contig4318:11555..11749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4318 11556..11749 +
1691481236.6457503-UTR-H-paniculata_contig4318:11555..117491691481236.6457503-UTR-H-paniculata_contig4318:11555..11749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4318 11556..11749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.727175-CDS-H-paniculata_contig4318:9631..99551622930311.727175-CDS-H-paniculata_contig4318:9631..9955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 9632..9955 +
1691481236.6268537-CDS-H-paniculata_contig4318:9631..99551691481236.6268537-CDS-H-paniculata_contig4318:9631..9955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 9632..9955 +
1622930311.7430258-CDS-H-paniculata_contig4318:11318..115551622930311.7430258-CDS-H-paniculata_contig4318:11318..11555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 11319..11555 +
1691481236.6360667-CDS-H-paniculata_contig4318:11318..115551691481236.6360667-CDS-H-paniculata_contig4318:11318..11555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 11319..11555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4318.11022.1

>prot_H-paniculata_contig4318.11022.1 ID=prot_H-paniculata_contig4318.11022.1|Name=mRNA_H-paniculata_contig4318.11022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MVGRIITVRRKIVIGLIPWVLLFLWTVTNCSVFAYSSGPLPTVQAAEAVS
RRFKLFRARYPLEGAPEFARLHVAVIVQDISSNAEEASDQKIDGKARPTL
LLYDFLPQEPTALKTTTRLLLGRDVAGNLRERELRRLPRGAVFVGDTNAT
LKEMRHFVSTYPDRLSLVSNSCVTFVDAFIAQHRIG*
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mRNA from alignment at H-paniculata_contig4318:9562..11749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4318.11022.1 ID=mRNA_H-paniculata_contig4318.11022.1|Name=mRNA_H-paniculata_contig4318.11022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2188bp|location=Sequence derived from alignment at H-paniculata_contig4318:9562..11749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGCACTGACATATGAGCTCTGGGCTGTCTTGCATGTTCAGTAGAGACA
GTTGAAGGCTTTGCAGTACTATGGTCGGCAGAATAATAACTGTGCGAAGA
AAGATAGTGATAGGGTTGATACCTTGGGTGTTGTTGTTTCTGTGGACAGT
CACCAATTGTTCGGTGTTCGCCTACTCTTCTGGGCCGTTACCAACAGTTC
AAGCGGCAGAAGCAGTTTCGAGGCGTTTCAAGCTTTTCCGGGCAAGATAC
CCGCTGGAGGGTGCCCCAGAGTTCGCAAGGCTTCACGTTGCCGTCATAGT
TCAGGATATTAGCTCAAATGCAGAGGAAGCGAGCGACCAGAAAATCGACG
GGAAAGCCAGGCCAACATTGCTTTTGTATGACTTTTTGCCTCAGGTATGA
GGCGCTGCGGCATGTTCAATGCCTTAAGATTGAAGAGGAGTCAGTAGTAC
TAAACCGTACAGGGCATAATGTTATTTTACAAGCATACTGGTCAGGTCAA
TCAATTTGGCGCACGCCTTGTGCCGCACCATTTTGGCTAGACGCAAGAAT
GCCACTTTTGCATACAGCTGCAGTGTTGCAATAGAGCAGTGGTGTCATAT
CCCTCCCCAAGCTCTATCTCAAAGAGTGGCTACACATTAAAAATTTGCTG
GGGGTGAGTACAGATGCGGCCCGCCAGTAACAAACAGGTTAAAGAGAATC
CGAGACTCAAATCCTCAAGAAAGTAAGAAATTTGAATTAAGAAATTGACT
CAAGTTGTGCCAGAGGTTAAGAAACATGCAATAAGAAACTGCATAATCTA
TAGATCTACCGCATACAGGAAACGGTGTGGTTGTTGGTCCTCAGCAGCAG
TAAGAAATGTGGTGTATGCACACCTCATGGATGGAGGTACTACCGTAGTA
CACACCAGATCAAAACGCAACTCGCGTTTAATGTTTCTGCAGAACCTGTT
TGGGTTCTTGATTTTATCGAGGATGACCAAATGAAGCCTGTCCTTTTTTA
ATACTACCTATGGAAGGTCACCAGTATGATGGCAATCTCTCCTGTGCATA
ATCGGTGGAATGTTTACATGAATGAGAGCGTGTCTTTCTCTTGTGTTGTA
CGAAAAAATCGTAAAGTTTACGTAGATCTCGGGCTGTTCGGGTCCTTAGA
ACACTACGGTAGGTGGTAGAGGGGCCGTGTTTTATCTTCTCTGATCCACA
GTCCTCCTTTTTGGCCCTCATTCCCCGTTTTTCCTTTCCCCTCCTGATTT
TTTTTAAACTTCAGAAACGAAAATAACATATTTTCGGCCATTGTATTGCT
TAGGGCCAAATGTTCCATTTTCGCTCGATTTTTCCGAGATTATCTTCAGG
TGTTATCAGCATAAGGGCAAAAAAGGAGGAAGACATGAAAAACATACCCT
CACGTCAAGAACAGCTTTAAGAAATAACGATATAATAAAACCCCGTAAAA
AAAACGTTTTCTTTGCCCTCAACAATAAGGAAGTGGTCGATAAGAAATAC
AGCTTAACCTGTCGCCCGAAATACGGTGTGAAACCTCAAGCTAAATAAGG
GTTTCGTGCCTGGGGGACCGTATCTGTACGGAAACGATAATAGTGCACTT
TACAGTGGGACGTATAAGTAAACTGAAAATGAATGCTCCCATGTGCCCTT
CCGTACACGCAGTGCTGACTGTAGGGTATATATAGGTCCCCTCATCACTG
ATTCGTAGTCGTCCAATGCTTGCCGCGCTGACAACGTCACATATGTTACC
ATCACAGGAGCCTACTGCCCTCAAGACGACCACGAGGCTCTTACTAGGAA
GGGATGTTGCCGGGAATCTTCGGGAGCGGGAGCTTCGCCGTCTCCCGCGA
GGAGCTGTGTTTGTCGGGGACACGAATGCCACGTTGAAGGAGATGCGGCA
TTTTGTTTCCACTTATCCTGACCGGCTATCCCTCGTGTCTAACAGTTGCG
TGACTTTCGTTGATGCGTTCATTGCTCAACATAGGATTGGCTGAACCAAG
CATTACAACTCAATGATGAGGGCTGGTAGATGGAAGGAAGCCTTTGCTCC
GCATTGTTGAGAGGCAAACTCGAACGATGGACTATTGTTTTGCTCGCGAA
AAAATTTGCATTAGCGTTGTACATGGCGGCGTTCGAATAGTACCGGATCC
TGCTAGGCCTGGCAAAATATAGATATGTTGATTCAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4318:9562..11749+

>mRNA_H-paniculata_contig4318.11022.1 ID=mRNA_H-paniculata_contig4318.11022.1|Name=mRNA_H-paniculata_contig4318.11022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig4318:9562..11749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGGCAGAATAATAACTGTGCGAAGAAAGATAGTGATAGGGTTGAT
ACCTTGGGTGTTGTTGTTTCTGTGGACAGTCACCAATTGTTCGGTGTTCG
CCTACTCTTCTGGGCCGTTACCAACAGTTCAAGCGGCAGAAGCAGTTTCG
AGGCGTTTCAAGCTTTTCCGGGCAAGATACCCGCTGGAGGGTGCCCCAGA
GTTCGCAAGGCTTCACGTTGCCGTCATAGTTCAGGATATTAGCTCAAATG
CAGAGGAAGCGAGCGACCAGAAAATCGACGGGAAAGCCAGGCCAACATTG
CTTTTGTATGACTTTTTGCCTCAGATGGTCGGCAGAATAATAACTGTGCG
AAGAAAGATAGTGATAGGGTTGATACCTTGGGTGTTGTTGTTTCTGTGGA
CAGTCACCAATTGTTCGGTGTTCGCCTACTCTTCTGGGCCGTTACCAACA
GTTCAAGCGGCAGAAGCAGTTTCGAGGCGTTTCAAGCTTTTCCGGGCAAG
ATACCCGCTGGAGGGTGCCCCAGAGTTCGCAAGGCTTCACGTTGCCGTCA
TAGTTCAGGATATTAGCTCAAATGCAGAGGAAGCGAGCGACCAGAAAATC
GACGGGAAAGCCAGGCCAACATTGCTTTTGTATGACTTTTTGCCTCAGGA
GCCTACTGCCCTCAAGACGACCACGAGGCTCTTACTAGGAAGGGATGTTG
CCGGGAATCTTCGGGAGCGGGAGCTTCGCCGTCTCCCGCGAGGAGCTGTG
TTTGTCGGGGACACGAATGCCACGTTGAAGGAGATGCGGCATTTTGTTTC
CACTTATCCTGACCGGCTATCCCTCGTGTCTAACAGTTGCGTGACTTTCG
TTGATGCGTTCATTGCTCAACATAGGATTGGCTGAGAGCCTACTGCCCTC
AAGACGACCACGAGGCTCTTACTAGGAAGGGATGTTGCCGGGAATCTTCG
GGAGCGGGAGCTTCGCCGTCTCCCGCGAGGAGCTGTGTTTGTCGGGGACA
CGAATGCCACGTTGAAGGAGATGCGGCATTTTGTTTCCACTTATCCTGAC
CGGCTATCCCTCGTGTCTAACAGTTGCGTGACTTTCGTTGATGCGTTCAT
TGCTCAACATAGGATTGGCTGA
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