mRNA_H-paniculata_contig43137.11009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43137.11009.1
Unique NamemRNA_H-paniculata_contig43137.11009.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43137.11009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43137contigH-paniculata_contig43137:1004..1234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.3035586-CDS-H-paniculata_contig43137:1003..12191622930310.3035586-CDS-H-paniculata_contig43137:1003..1219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43137 1004..1219 -
1691481236.0265694-CDS-H-paniculata_contig43137:1003..12191691481236.0265694-CDS-H-paniculata_contig43137:1003..1219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43137 1004..1219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.3212771-UTR-H-paniculata_contig43137:1219..12341622930310.3212771-UTR-H-paniculata_contig43137:1219..1234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43137 1220..1234 -
1691481236.036454-UTR-H-paniculata_contig43137:1219..12341691481236.036454-UTR-H-paniculata_contig43137:1219..1234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43137 1220..1234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43137.11009.1prot_H-paniculata_contig43137.11009.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43137 1004..1219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43137.11009.1

>prot_H-paniculata_contig43137.11009.1 ID=prot_H-paniculata_contig43137.11009.1|Name=mRNA_H-paniculata_contig43137.11009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MAVAFYKGNERKRTIAVELDNTNDVDDTSYEFTSNGETTSYENFYLYSDE
TKTLCIEAEDLGNSEWLSIKEV
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mRNA from alignment at H-paniculata_contig43137:1004..1234-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43137.11009.1 ID=mRNA_H-paniculata_contig43137.11009.1|Name=mRNA_H-paniculata_contig43137.11009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig43137:1004..1234- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACATCGTATACATGGCTGTGGCTTTCTACAAAGGCAACGAGCGCAA
GAGGACTATCGCCGTGGAGCTGGACAACACCAACGACGTCGATGATACGA
GCTACGAATTCACCTCTAACGGAGAGACGACCTCCTACGAAAACTTTTAC
CTATACAGCGACGAGACCAAGACGCTGTGCATCGAGGCCGAGGACCTGGG
GAACTCGGAGTGGCTCAGCATCAAAGAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig43137:1004..1234-

>mRNA_H-paniculata_contig43137.11009.1 ID=mRNA_H-paniculata_contig43137.11009.1|Name=mRNA_H-paniculata_contig43137.11009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig43137:1004..1234- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTGGCTTTCTACAAAGGCAACGAGCGCAAGAGGACTATCGCCGT
GGAGCTGGACAACACCAACGACGTCGATGATACGAGCTACGAATTCACCT
CTAACGGAGAGACGACCTCCTACGAAAACTTTTACCTATACAGCGACGAG
ACCAAGACGCTGTGCATCGAGGCCGAGGACCTGGGGAACTCGGAGTGGCT
CAGCATCAAAGAGGTCATGGCTGTGGCTTTCTACAAAGGCAACGAGCGCA
AGAGGACTATCGCCGTGGAGCTGGACAACACCAACGACGTCGATGATACG
AGCTACGAATTCACCTCTAACGGAGAGACGACCTCCTACGAAAACTTTTA
CCTATACAGCGACGAGACCAAGACGCTGTGCATCGAGGCCGAGGACCTGG
GGAACTCGGAGTGGCTCAGCATCAAAGAGGTC
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