mRNA_H-paniculata_contig43101.11006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43101.11006.1
Unique NamemRNA_H-paniculata_contig43101.11006.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43101.11006.1 vs. uniprot
Match: UPI001C79D330 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C79D330)

HSP 1 Score: 54.3 bits (129), Expect = 1.370e-6
Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:    1 WVCDNGATKHVIDDPDFLCNYQECR-GRVHLADGNYLTIEGVGILFIHFRFDSKVILMKLTQVAHIPSLSHHLLSLGRFADSGH 249
            WV D+GA+ H     + + NY     G+V+LADG  L IEG+G + I+    S  +L K   V H+P L  +L+S+G+    GH
Sbjct:  422 WVLDSGASFHTTAHREIMQNYVTGDFGKVYLADGEALEIEGMGDVPINLPNGSAWLLQK---VRHVPKLMRNLISVGQLDADGH 502
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BLAST of mRNA_H-paniculata_contig43101.11006.1 vs. uniprot
Match: A0A6G0WQ54_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ54_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.670e-6
Identity = 24/76 (31.58%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    4 VCDNGATKHVIDDPDFLCNYQECRGRVHLADGNYLTIEGVGILFIHFRFDSKVILMKLTQVAHIPSLSHHLLSLGR 231
            + D+GAT H   D  +    +   G+V +A+G+ + IEG G + +     S ++ +++T V +IPS+  +L SL R
Sbjct:  233 ILDSGATDHYCKDISWFTTLEPFTGKVRVANGDDMNIEGRGTIELEMNTPSGIVPIRMTDVMYIPSIQFNLFSLSR 308
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BLAST of mRNA_H-paniculata_contig43101.11006.1 vs. uniprot
Match: A0A2P6R9W2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R9W2_ROSCH)

HSP 1 Score: 51.6 bits (122), Expect = 1.170e-5
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:    1 WVCDNGATKHVIDDPDFLCNYQECRGRVHLA--DGNYLTIEGVGILFIHFRFDSKVILMKLTQVAHIPSLSHHLLSLGRF 234
            W+ D+GA++HV  D   L       G   L   +GN L I  +G   +H    S     KLT V H+P ++H+LLS+ RF
Sbjct:  381 WLADSGASQHVTPDLSHLSEVTPYTGNAKLTVGNGNNLQIAHIGSSLMHTPSAS----FKLTNVLHVPEITHNLLSVNRF 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43101.11006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001C79D3301.370e-638.10Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A6G0WQ54_9STRA4.670e-631.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P6R9W2_ROSCH1.170e-536.25Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43101contigH-paniculata_contig43101:127..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.1404204-CDS-H-paniculata_contig43101:126..3781622930310.1404204-CDS-H-paniculata_contig43101:126..378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43101 127..378 +
1691481235.9901304-CDS-H-paniculata_contig43101:126..3781691481235.9901304-CDS-H-paniculata_contig43101:126..378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43101 127..378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43101.11006.1prot_H-paniculata_contig43101.11006.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43101 127..378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43101.11006.1

>prot_H-paniculata_contig43101.11006.1 ID=prot_H-paniculata_contig43101.11006.1|Name=mRNA_H-paniculata_contig43101.11006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
WVCDNGATKHVIDDPDFLCNYQECRGRVHLADGNYLTIEGVGILFIHFRF
DSKVILMKLTQVAHIPSLSHHLLSLGRFADSGHK
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mRNA from alignment at H-paniculata_contig43101:127..378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43101.11006.1 ID=mRNA_H-paniculata_contig43101.11006.1|Name=mRNA_H-paniculata_contig43101.11006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig43101:127..378+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGTCTGTGATAATGGGGCAACAAAGCACGTGATTGATGACCCTGATTT
TCTTTGTAATTACCAGGAATGTAGGGGGCGTGTTCACCTTGCTGATGGTA
ATTATCTCACTATCGAAGGAGTTGGAATTTTATTCATCCACTTTCGATTT
GACTCGAAAGTAATATTGATGAAATTAACTCAAGTTGCTCACATTCCGTC
TCTGAGTCATCACCTCCTATCTCTCGGTAGATTCGCGGACTCTGGTCACA
AA
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Coding sequence (CDS) from alignment at H-paniculata_contig43101:127..378+

>mRNA_H-paniculata_contig43101.11006.1 ID=mRNA_H-paniculata_contig43101.11006.1|Name=mRNA_H-paniculata_contig43101.11006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig43101:127..378+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGTCTGTGATAATGGGGCAACAAAGCACGTGATTGATGACCCTGATTT
TCTTTGTAATTACCAGGAATGTAGGGGGCGTGTTCACCTTGCTGATGGTA
ATTATCTCACTATCGAAGGAGTTGGAATTTTATTCATCCACTTTCGATTT
GACTCGAAAGTAATATTGATGAAATTAACTCAAGTTGCTCACATTCCGTC
TCTGAGTCATCACCTCCTATCTCTCGGTAGATTCGCGGACTCTGGTCACA
AATGGGTCTGTGATAATGGGGCAACAAAGCACGTGATTGATGACCCTGAT
TTTCTTTGTAATTACCAGGAATGTAGGGGGCGTGTTCACCTTGCTGATGG
TAATTATCTCACTATCGAAGGAGTTGGAATTTTATTCATCCACTTTCGAT
TTGACTCGAAAGTAATATTGATGAAATTAACTCAAGTTGCTCACATTCCG
TCTCTGAGTCATCACCTCCTATCTCTCGGTAGATTCGCGGACTCTGGTCA
CAAA
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