mRNA_H-paniculata_contig1172.1100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1172.1100.1
Unique NamemRNA_H-paniculata_contig1172.1100.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1172.1100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1172contigH-paniculata_contig1172:6286..7222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928880.569599-CDS-H-paniculata_contig1172:6285..65691622928880.569599-CDS-H-paniculata_contig1172:6285..6569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1172 6286..6569 -
1691480655.0950887-CDS-H-paniculata_contig1172:6285..65691691480655.0950887-CDS-H-paniculata_contig1172:6285..6569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1172 6286..6569 -
1622928880.587758-CDS-H-paniculata_contig1172:7173..72221622928880.587758-CDS-H-paniculata_contig1172:7173..7222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1172 7174..7222 -
1691480655.110164-CDS-H-paniculata_contig1172:7173..72221691480655.110164-CDS-H-paniculata_contig1172:7173..7222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1172 7174..7222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1172.1100.1prot_H-paniculata_contig1172.1100.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1172 6286..7222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1172.1100.1

>prot_H-paniculata_contig1172.1100.1 ID=prot_H-paniculata_contig1172.1100.1|Name=mRNA_H-paniculata_contig1172.1100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
GDRLPPFPRPSKMSQEGEGGEAGEAGEGAEGLTSSDDVSVTNDSTTSVWT
SSNNSHDQVYHMSNGGQTTSSSDPQQQPSTTATPSSPPPPSLPSPPPTPT
APLASEHNNKN
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mRNA from alignment at H-paniculata_contig1172:6286..7222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1172.1100.1 ID=mRNA_H-paniculata_contig1172.1100.1|Name=mRNA_H-paniculata_contig1172.1100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at H-paniculata_contig1172:6286..7222- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGATCGCCTCCCCCCCTTCCCCCGCCCCTCCAAGATGTCACAAGAAGG
TGGACGAGGCATTTTGTTTTTCTTGGTGCAGCTATGCAAGTGCAATGATT
AGGATTAGTAGTAGTAGTGCATGTAGTATATATGTAGCGTGATCGTGATA
GTAAACACTTGGGCTCGATGCCGCGATGCCCGATGGGATGGATTGACATG
TGTGCATGACATGCCATTCGGCCGTCCTGCCGCTGCTGCTGCGATCACCA
AGGGTACGCCTTATATCAGCAAACCTGCAAAGTTCTCATGTTGTGTAATC
ATCAATTCCCATCCCTGCCGCGTGACACCTCCGACGACTCACTGCCCATA
GGAAATGACGTTTGTGGGTGTTTGATTGTATCTTAAATTGCTGGCTTTGA
GATACAAACCAGGTCACGAAAACAAATGAAAAAAACGCCGCTGCGGATTT
GCAAGGTTCGTACTAAGGCGGGCCCGGTCCTTGACCAGTTCCTGCCTGTG
TCATACATCAAGAAGCGTATGCAGGTCACGTACTCTGGGAGTAACCGCTA
TAATCACGTTTAAATAATCAAAAACGCATATTTGTCAAAAAGTCCGGTCC
GACCAACTTGAGCGATCGCCCGCCCAACCCCACTTGTGCGTACAATTGCC
CAGGAGAAGGAGGAGAAGCAGGAGAAGCAGGAGAAGGAGCAGAAGGTCTT
ACTTCGAGTGATGACGTTAGCGTAACGAACGACTCTACGACAAGCGTTTG
GACCAGTAGTAACAATAGCCACGACCAGGTTTACCATATGTCAAACGGTG
GGCAGACGACAAGCAGCTCGGACCCACAACAACAGCCGAGTACCACTGCT
ACCCCCAGCAGTCCACCACCACCATCACTACCATCACCGCCGCCGACGCC
AACTGCACCATTAGCGTCCGAGCACAACAACAAGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1172:6286..7222-

>mRNA_H-paniculata_contig1172.1100.1 ID=mRNA_H-paniculata_contig1172.1100.1|Name=mRNA_H-paniculata_contig1172.1100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig1172:6286..7222- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGATCGCCTCCCCCCCTTCCCCCGCCCCTCCAAGATGTCACAAGAAGG
GGGATCGCCTCCCCCCCTTCCCCCGCCCCTCCAAGATGTCACAAGAAGGA
GAAGGAGGAGAAGCAGGAGAAGCAGGAGAAGGAGCAGAAGGTCTTACTTC
GAGTGATGACGTTAGCGTAACGAACGACTCTACGACAAGCGTTTGGACCA
GTAGTAACAATAGCCACGACCAGGTTTACCATATGTCAAACGGTGGGCAG
ACGACAAGCAGCTCGGACCCACAACAACAGCCGAGTACCACTGCTACCCC
CAGCAGTCCACCACCACCATCACTACCATCACCGCCGCCGACGCCAACTG
CACCATTAGCGTCCGAGCACAACAACAAGAACGAGAAGGAGGAGAAGCAG
GAGAAGCAGGAGAAGGAGCAGAAGGTCTTACTTCGAGTGATGACGTTAGC
GTAACGAACGACTCTACGACAAGCGTTTGGACCAGTAGTAACAATAGCCA
CGACCAGGTTTACCATATGTCAAACGGTGGGCAGACGACAAGCAGCTCGG
ACCCACAACAACAGCCGAGTACCACTGCTACCCCCAGCAGTCCACCACCA
CCATCACTACCATCACCGCCGCCGACGCCAACTGCACCATTAGCGTCCGA
GCACAACAACAAGAAC
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