mRNA_H-paniculata_contig430.10985.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig430.10985.1
Unique NamemRNA_H-paniculata_contig430.10985.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig430.10985.1 vs. uniprot
Match: D8LRZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ0_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 7.570e-24
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 3 
Query:   48 FFEISPPIDRDIFLGIVHEVLESSLLMFAPFGLPRGLRQAAGNEASFLRQYGPRFRLILEAVSEMVYSSRGVSESEMAVTLHK 296
            FFE+  P+D   FL +  EVL  SLL+ APFGLPR LR+A G+E  F+R YGPRFR ILEAVS++ Y  RGV+ES++AVTLHK
Sbjct:    5 FFEVVEPLDHATFLSVCDEVLRDSLLVLAPFGLPRHLREALGSEKEFIRLYGPRFRFILEAVSDVTYKERGVTESQVAVTLHK 87
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BLAST of mRNA_H-paniculata_contig430.10985.1 vs. uniprot
Match: A0A835YUV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.240e-22
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = 3 
Query:   15 NTPIRTMKTA-----NFFEISPPIDRDIFLGIVHEVLESSLLMFAPFGLPRGLRQAAGNEASFLRQYGPRFRLILEAVSEMVYSSRGVSESEMAVTLHK*VS 305
            ++P+ T + A     +FF++  P+D   FL    EVLE+SL++FAP GLP  L++   +EA FL  YGPRFR ILEAVSE VY +RG+SESEM+VT+HK V+
Sbjct:   23 SSPLPTARDAADSEGDFFQVVAPLDLSTFLSATREVLETSLMLFAPLGLPPLLKRICPSEAGFLETYGPRFRAILEAVSEAVYEARGISESEMSVTIHKLVT 124
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BLAST of mRNA_H-paniculata_contig430.10985.1 vs. uniprot
Match: A0A7S2SM07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM07_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-6
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 3 
Query:   48 FFEISPPIDRDIFLGIVHEVLESSLLMFAPFGLPRGLRQAAGNEASFLRQYGPRFRLILEAVSEMVYSSRGVSESEMAV 284
            FF++ P +  + F+G+  EVLE++LL+FAPFG    L      +  F ++    F  +++AV+E  Y   G SE  +A+
Sbjct:   28 FFQLPPSLSEETFVGLTREVLEATLLLFAPFGTA-ALFPGTDADPGFAQEVQEDFNRLMDAVAEACYRRHGFSEGTVAL 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig430.10985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRZ0_ECTSI7.570e-2461.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUV6_9STRA1.240e-2251.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SM07_9STRA1.110e-634.18Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig430contigH-paniculata_contig430:5391..6747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D8LRZ0
Preferred nameTOMM70A
KEGG koko:K00738,ko:K17768
KEGG TC3.A.8.1
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001558,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010611,GO:0010614,GO:0010721,GO:0014070,GO:0014741,GO:0014743,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016202,GO:0017038,GO:0019867,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030308,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0040008,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043502,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045595,GO:0045596,GO:0045843,GO:0045926,GO:0046620,GO:0046621,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0055085,GO:0060284,GO:0060420,GO:0061024,GO:0061050,GO:0061052,GO:0061117,GO:0065002,GO:0065007,GO:0070201,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090087,GO:0090150,GO:0090151,GO:0090257,GO:0097066,GO:0097068,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1904386,GO:1904589,GO:1904591,GO:1904680,GO:1904951,GO:1905207,GO:1905208,GO:1990542,GO:2000026,GO:2000725,GO:2000726
EggNOG free text desc.protein transmembrane transport
EggNOG OGsKOG0547@1,KOG0547@2759
Ec32 ortholog descriptionMitochondrial import receptor, Tom70 homolog
Ec32 orthologEc-08_001370.1
EC2.4.1.145
COG Functional cat.S
CAZyGT54
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000,ko03029
Exons2
Model size576
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig430.10985.1prot_H-paniculata_contig430.10985.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig430 5668..6715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930306.8977695-UTR-H-paniculata_contig430:5390..56671622930306.8977695-UTR-H-paniculata_contig430:5390..5667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig430 5391..5667 -
1691481234.6012096-UTR-H-paniculata_contig430:5390..56671691481234.6012096-UTR-H-paniculata_contig430:5390..5667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig430 5391..5667 -
1622930306.976127-UTR-H-paniculata_contig430:6715..67471622930306.976127-UTR-H-paniculata_contig430:6715..6747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig430 6716..6747 -
1691481234.6299653-UTR-H-paniculata_contig430:6715..67471691481234.6299653-UTR-H-paniculata_contig430:6715..6747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig430 6716..6747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930306.9169471-CDS-H-paniculata_contig430:5667..58151622930306.9169471-CDS-H-paniculata_contig430:5667..5815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig430 5668..5815 -
1691481234.6131256-CDS-H-paniculata_contig430:5667..58151691481234.6131256-CDS-H-paniculata_contig430:5667..5815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig430 5668..5815 -
1622930306.9410245-CDS-H-paniculata_contig430:6596..67151622930306.9410245-CDS-H-paniculata_contig430:6596..6715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig430 6597..6715 -
1691481234.621528-CDS-H-paniculata_contig430:6596..67151691481234.621528-CDS-H-paniculata_contig430:6596..6715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig430 6597..6715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig430.10985.1

>prot_H-paniculata_contig430.10985.1 ID=prot_H-paniculata_contig430.10985.1|Name=mRNA_H-paniculata_contig430.10985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MKTANFFEISPPIDRDIFLGIVHEVLESSLLMFAPFGLPRGLRQAAGNEA
SFLRQYGPRFRLILEAVSEMVYSSRGVSESEMAVTLHK*
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mRNA from alignment at H-paniculata_contig430:5391..6747-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig430.10985.1 ID=mRNA_H-paniculata_contig430.10985.1|Name=mRNA_H-paniculata_contig430.10985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1357bp|location=Sequence derived from alignment at H-paniculata_contig430:5391..6747- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCCAAGACAGGCAACACACCAATACGAACAATGAAGACAGCGAATTTC
TTCGAGATTTCTCCTCCTATTGACCGTGATATCTTTCTCGGCATTGTCCA
CGAGGTGCTAGAATCTAGTCTCCTGATGTTTGCCCCGTTCGGGTTGCCAA
GGTAAGTGTCTTACGTCATGTACCGTATTTGTCGCTCTCTGTAGGAAGTA
GACAGTTTGTAGTATTGTAAAATGGGCAAACCTGAAACGGCAGCCAGTCT
CTTATGAGTTCTGAAGCACATCATGACAGCTGTCGAGGTCGGGAGGGAGA
GAGAGAGAGCCGTCTTGCTGTTCGCTCCCTGGCAACGCGTTATGTACATC
TACAGCGAGGCTTCTAGCGAAGATGGTTTAGTGGCTGTCTACAGTTCTCG
TGGTCATCAAGGTATGGCTCTGAGACACTGAGAACGACGCAGTAAGTAGC
AGTAGGTACTGTGAGTACTCTGCGGGTACTGTATGTAGAAGAGGCACAGA
GTATTTTCATCAACCATGGCATCAGTGACGAGTACCCGAGAAAAGTTTGT
TTCTTTTACCTAAGCCATGCTACTCATCGATACGTAGGATGCAGCATATA
TGCCATGCCTTTGTGTTCCTAATGCACTAGCTCCAGCGCAGTCATGCTAC
ATTCAGCAAACCCAACAAAGAATACACTATTTATTTGCTGATCTCCCCTG
AGAGATTGCACAAGGCGGCACCTACTTGCCGGTTATGTTAAATGAGGTGT
TTGTTACTTGAGTCTGTCTTATTTGCCTATGCGGATGCCACCGGCTGCAC
CTGCTCTAGCCTTTTCCTCTTTACATCCGGGGGATGAGCCACGCAGTGCA
GTGTAATGCAATTCTTCCTCCATGGGTCTTTTATATTTTCGTGTCATAGA
ACCCCCCCCACTAACTACATATGTTGCAACAGGGGACTCCGCCAGGCGGC
TGGCAACGAGGCGTCTTTCCTCCGTCAATATGGACCTCGGTTTAGGCTTA
TTCTTGAGGCGGTATCAGAGATGGTGTACTCTTCGAGAGGCGTGTCAGAG
AGCGAGATGGCTGTTACTCTCCACAAGTGAGTGTCCATTCTGCGTTCTTC
ACACGTGGCTGGGGGGGGTGTATTAGTTGGGATGTTTATGTTGTGTATGT
AGTCCTCCCATCGACAGAACAGGAAGTCTACGACAAGCCGTGTCTTTCAT
CGGCCGCTTCTTATGATTGGAAAAGGGCGTCCTGGTAAAAAATAAGGATT
TTTCCACAAACACATAAAGTACAATATGCTGTTGGCTGGCTTTTGTTATG
CTAATGTGTTGTATCATGACGGTATCATGTCCAATCAGTGGATAATGACC
ATAGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig430:5391..6747-

>mRNA_H-paniculata_contig430.10985.1 ID=mRNA_H-paniculata_contig430.10985.1|Name=mRNA_H-paniculata_contig430.10985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig430:5391..6747- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACAGCGAATTTCTTCGAGATTTCTCCTCCTATTGACCGTGATAT
CTTTCTCGGCATTGTCCACGAGGTGCTAGAATCTAGTCTCCTGATGTTTG
CCCCGTTCGGGTTGCCAAGATGAAGACAGCGAATTTCTTCGAGATTTCTC
CTCCTATTGACCGTGATATCTTTCTCGGCATTGTCCACGAGGTGCTAGAA
TCTAGTCTCCTGATGTTTGCCCCGTTCGGGTTGCCAAGGGGACTCCGCCA
GGCGGCTGGCAACGAGGCGTCTTTCCTCCGTCAATATGGACCTCGGTTTA
GGCTTATTCTTGAGGCGGTATCAGAGATGGTGTACTCTTCGAGAGGCGTG
TCAGAGAGCGAGATGGCTGTTACTCTCCACAAGTGAGGGACTCCGCCAGG
CGGCTGGCAACGAGGCGTCTTTCCTCCGTCAATATGGACCTCGGTTTAGG
CTTATTCTTGAGGCGGTATCAGAGATGGTGTACTCTTCGAGAGGCGTGTC
AGAGAGCGAGATGGCTGTTACTCTCCACAAGTGA
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