mRNA_H-paniculata_contig42954.10978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42954.10978.1
Unique NamemRNA_H-paniculata_contig42954.10978.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42954.10978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42954contigH-paniculata_contig42954:683..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D8LTG1
Preferred nameTTLL5
KEGG koko:K16601,ko:K16602,ko:K16610
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0001578,GO:0001654,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006464,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007423,GO:0008150,GO:0008152,GO:0009566,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0032501,GO:0032502,GO:0032504,GO:0035082,GO:0036211,GO:0040011,GO:0042995,GO:0043010,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044782,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0060041,GO:0060271,GO:0070739,GO:0070740,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0097722,GO:0120025,GO:0120031,GO:0120036,GO:0140096,GO:1901564
EggNOG free text desc.protein polyglutamylation
EggNOG OGsKOG2156@1,KOG2156@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons1
Model size168
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930305.8841038-CDS-H-paniculata_contig42954:682..8261622930305.8841038-CDS-H-paniculata_contig42954:682..826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42954 683..826 -
1691481234.1574302-CDS-H-paniculata_contig42954:682..8261691481234.1574302-CDS-H-paniculata_contig42954:682..826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42954 683..826 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930305.9021614-UTR-H-paniculata_contig42954:826..8501622930305.9021614-UTR-H-paniculata_contig42954:826..850Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42954 827..850 -
1691481234.1702518-UTR-H-paniculata_contig42954:826..8501691481234.1702518-UTR-H-paniculata_contig42954:826..850Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42954 827..850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42954.10978.1prot_H-paniculata_contig42954.10978.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42954 683..826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42954.10978.1

>prot_H-paniculata_contig42954.10978.1 ID=prot_H-paniculata_contig42954.10978.1|Name=mRNA_H-paniculata_contig42954.10978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MANKCSLKSLRRRLVEMGIDVPKLWSDIHDVIIKTMVSIESQASGAA*
back to top

mRNA from alignment at H-paniculata_contig42954:683..850-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42954.10978.1 ID=mRNA_H-paniculata_contig42954.10978.1|Name=mRNA_H-paniculata_contig42954.10978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig42954:683..850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCAGAGGAGACGAGAAAATGAAATGGCAAACAAGTGCAGCTTGAAGTC
GCTTCGGCGGAGGCTTGTGGAAATGGGCATTGATGTGCCCAAGTTGTGGA
GTGATATTCACGACGTTATCATCAAGACTATGGTATCGATTGAATCCCAG
GCGAGTGGAGCAGCCTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig42954:683..850-

>mRNA_H-paniculata_contig42954.10978.1 ID=mRNA_H-paniculata_contig42954.10978.1|Name=mRNA_H-paniculata_contig42954.10978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig42954:683..850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAACAAGTGCAGCTTGAAGTCGCTTCGGCGGAGGCTTGTGGAAAT
GGGCATTGATGTGCCCAAGTTGTGGAGTGATATTCACGACGTTATCATCA
AGACTATGGTATCGATTGAATCCCAGGCGAGTGGAGCAGCCTGAATGGCA
AACAAGTGCAGCTTGAAGTCGCTTCGGCGGAGGCTTGTGGAAATGGGCAT
TGATGTGCCCAAGTTGTGGAGTGATATTCACGACGTTATCATCAAGACTA
TGGTATCGATTGAATCCCAGGCGAGTGGAGCAGCCTGA
back to top