mRNA_H-paniculata_contig427.10919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig427.10919.1
Unique Name	mRNA_H-paniculata_contig427.10919.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.840e-26
Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = 3

Query:    3 AYQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSKRSLTDEETRWSK 287
            AYQ TVDH  R LAVT G  G+TNDKSIIR D AV    EDP Y ++ F ++  DGT  + K  YLLVDNGYH+W  L+PPSK  +   +  +SK
Sbjct:   20 AYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSK 114

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 9.520e-25
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3

Query:    3 AYQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSK 251
            A+Q TVDH GR LAVT+G  GATNDK+IIR D AV     DP Y ++ ++L+ +DG   E+K  YLLVDNGYH+W  L+PPSK
Sbjct:  186 AFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSK 268

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.260e-24
Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = 3

Query:    3 AYQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSKRSLTDEETRWSK 287
            AYQ TVDH  R LAVT G  G+TNDKSIIR D AV    EDP Y ++ F ++  DGT  + K  YLLVDNGYH+W  L+PPSK  +   +  +SK
Sbjct:  261 AYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSK 355

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.890e-24
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3

Query:    3 AYQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSK 251
            A+Q TVDH GR LAVT+G  GATNDK+IIR D AV     DP Y ++ ++L+ +DG   E+K  YLLVDNGYH+W  L+PPSK
Sbjct:  277 AFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSK 359

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 7.780e-24
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 3

Query:    6 YQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSKRSLTDEETRWSK 287
            YQ TVDH GRA+AVT+G  G+TNDK+ +  D AV+    D  Y ++TF ++N+DGT    K  Y+LVDNGYH+W +L+ PSK  L++ +  +SK
Sbjct:   64 YQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSK 157

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.000e-23
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 3

Query:    3 AYQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSKRSLTDEETRWSK 287
            AYQ TVDH  RA+AVT+G  G+TNDK+I+  D AV     D  Y ++TF L+NEDGT    K  Y L DNGYH+W +L+ PSK  L++++  +SK
Sbjct:  108 AYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSK 202

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.520e-22
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 3

Query:    3 AYQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSK 251
            AYQ TVDH GRA+A+T G  GATNDK+IIR D  V     D  Y  RT++L   DGT+ E+K  YL+VDNGYHE   L  P++
Sbjct:   44 AYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVNSLGHPNR 126

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.090e-22
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 3

Query:    6 YQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSKRSLTDEETRWSK 287
            YQ TV+H GRA+AVT+G   +TNDK+ +  D  V+    D  Y ++TF ++NEDGT    K  YLLVDNGYH+W +LM P+K  L++ +  +SK
Sbjct:  204 YQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSK 297

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.220e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 3

Query:    6 YQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNGYHEWAMLMPPSKRSLTDEETRWSK 287
            YQ TV+H GR LAVT+G  G+TNDK+II  D AV     D  Y ++ F +  +DGT    K  YL+VDNGYH+W ML+ PSK  L++ +  +SK
Sbjct:  233 YQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSK 326

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BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Match: A0A6H5JTS2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.600e-20
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 3

Query:    3 AYQATVDHRGRALAVTKGIPGATNDKSIIR*DVAVQTAGEDPTYCDRTFRLFNEDGTWMEQKEVYLLVDNG------------YHEWAMLMPPSKRSLTDEETRWSK 287
            AYQ TVDH GRA+AVT+G  G+TNDK+I   D AV+    D  Y D+TF ++NEDGT    K  YLLVDNG            +  W +L+ PSK  L++ +  +SK
Sbjct:  176 AYQVTVDHAGRAIAVTEGFTGSTNDKTIFCWDAAVEKIRTDKQYTDKTFDVYNEDGTTTTLKGCYLLVDNGTEPVFAFHLSVVFFHWQILIEPSKNPLSENDLLFSK 282

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig427.10919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JTC6_9PHAE	4.840e-26	53.68	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5KY50_9PHAE	9.520e-25	57.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JAU4_9PHAE	1.260e-24	53.68	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPH7_9PHAE	1.890e-24	57.83	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
D7FSK2_ECTSI	7.780e-24	48.94	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JUX7_9PHAE	1.000e-23	50.53	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JG32_9PHAE	6.520e-22	54.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHI0_9PHAE	8.090e-22	47.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBE2_9PHAE	1.220e-20	48.94	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTS2_9PHAE	1.600e-20	45.79	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig427	contig	H-paniculata_contig427:21352..22029 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	mitochondrion
Exons	2
Model size	288
Cds size	261
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig427.10919.1	prot_H-paniculata_contig427.10919.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig427 21352..22002 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930297.8687305-CDS-H-paniculata_contig427:21351..21575	1622930297.8687305-CDS-H-paniculata_contig427:21351..21575	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig427 21352..21575 +
1691481230.6993725-CDS-H-paniculata_contig427:21351..21575	1691481230.6993725-CDS-H-paniculata_contig427:21351..21575	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig427 21352..21575 +
1622930297.8807588-CDS-H-paniculata_contig427:21965..22002	1622930297.8807588-CDS-H-paniculata_contig427:21965..22002	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig427 21966..22002 +
1691481230.7104478-CDS-H-paniculata_contig427:21965..22002	1691481230.7104478-CDS-H-paniculata_contig427:21965..22002	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig427 21966..22002 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930297.8926487-UTR-H-paniculata_contig427:22002..22029	1622930297.8926487-UTR-H-paniculata_contig427:22002..22029	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig427 22003..22029 +
1691481230.7181253-UTR-H-paniculata_contig427:22002..22029	1691481230.7181253-UTR-H-paniculata_contig427:22002..22029	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig427 22003..22029 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig427:21352..22029+
coding sequence from alignment at H-paniculata_contig427:21352..22029+

protein sequence of mRNA_H-paniculata_contig427.10919.1

>prot_H-paniculata_contig427.10919.1 ID=prot_H-paniculata_contig427.10919.1|Name=mRNA_H-paniculata_contig427.10919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
WHTKRRLTIAAAPLPSRRAFLALPTTSQSSVRTWRCKRPVKIPRTVTGHS
DSSTRTAHGWNKRKSTCWWTTGTMNGLCSCPLQSAP*

mRNA from alignment at H-paniculata_contig427:21352..22029+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig427.10919.1 ID=mRNA_H-paniculata_contig427.10919.1|Name=mRNA_H-paniculata_contig427.10919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at H-paniculata_contig427:21352..22029+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCATACCAAGCGACGGTTGACCATCGCGGCCGCGCCCTTGCCGTCACG
AAGGGCATTCCTGGCGCTACCAACGACAAGTCAATCATCCGTTAGGACGT
GGCGGTGCAAACGGCCGGTGAAGATCCCACGTACTGTGACCGGACATTCA
GACTCTTCAACGAGGACGGCACATGGATGGAACAAAAGGAAGTCTACCTG
CTGGTGGACAACGGGTACCATGAAGTGAGAACGTCACGGCCATGGTTCTA
ATAGGCGAAGATTTCCTATTACCGAGGACTAGTGTTAAGTTCAATGCAGC
CGAAATGTGAAGGGTTAGGGTTAAGTGCCTGTTGTACCACCGTCATATCT
AAAATGCGAGTTGACAATGTTCTCGGCGTTTAAAAGTAGCGAGACTAATG
CTAATCGCAACCAAACACACATTTCAAAATTGAGGAATTCGATCACAATT
GATCTTTACGCCAACTTTCATTTATTATTCCGGCATTGCCGCCTGGTGCG
CCCGTTTCAGTTAGTGATAACAGCCCCGTGTGGGAAACCAACACACACAC
ATCCTCGCTCTGTGGAAACCAAACACCCTCTCGTCGACCCCATCGCGTCT
TCACACACACGCAGTGGGCTATGCTCATGCCCCCTTCAAAGCGCTCCTTG
ACCGATGAGGAGACACGGTGGAGCAAGA

Coding sequence (CDS) from alignment at H-paniculata_contig427:21352..22029+

>mRNA_H-paniculata_contig427.10919.1 ID=mRNA_H-paniculata_contig427.10919.1|Name=mRNA_H-paniculata_contig427.10919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig427:21352..22029+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCATACCAAGCGACGGTTGACCATCGCGGCCGCGCCCTTGCCGTCACG
AAGGGCATTCCTGGCGCTACCAACGACAAGTCAATCATCCGTTAGGACGT
GGCGGTGCAAACGGCCGGTGAAGATCCCACGTACTGTGACCGGACATTCA
GACTCTTCAACGAGGACGGCACATGGATGGAACAAAAGGAAGTCTACCTG
CTGGTGGACAACGGGTACCATGAATGGCATACCAAGCGACGGTTGACCAT
CGCGGCCGCGCCCTTGCCGTCACGAAGGGCATTCCTGGCGCTACCAACGA
CAAGTCAATCATCCGTTAGGACGTGGCGGTGCAAACGGCCGGTGAAGATC
CCACGTACTGTGACCGGACATTCAGACTCTTCAACGAGGACGGCACATGG
ATGGAACAAAAGGAAGTCTACCTGCTGGTGGACAACGGGTACCATGAATG
GGCTATGCTCATGCCCCCTTCAAAGCGCTCCTTGATGGGCTATGCTCATG
CCCCCTTCAAAGCGCTCCTTGA