prot_H-paniculata_contig4261.10891.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4261.10891.1
Unique Nameprot_H-paniculata_contig4261.10891.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length121
Homology
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BLAST of mRNA_H-paniculata_contig4261.10891.1 vs. uniprot
Match: A0A6H5KD69_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD69_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.740e-18
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0 
Query:    4 EIGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPALRPDYYAAVINR 50
            E+GAITLFG LMDYHGALQRYSLQIKGRYIEVAPA+R DYY+AVI R
Sbjct:  307 EVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKR 353
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BLAST of mRNA_H-paniculata_contig4261.10891.1 vs. uniprot
Match: A0A835YKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.340e-15
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 0 
Query:    2 EGEIGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPALRPDYYAAVINR 50
            E  + A+ LFGN+MDYHGALQRYSLQ+ GRY+EVAPALR DYYAA++ R
Sbjct:   93 EQTLDAVVLFGNMMDYHGALQRYSLQLLGRYVEVAPALRGDYYAAIMQR 141
[Close]
BLAST of mRNA_H-paniculata_contig4261.10891.1 vs. uniprot
Match: A0A836CJY6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.470e-13
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0 
Query:    5 IGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPALRPDYYAAVINR 50
            + A+ LFGNLMDYHGALQRYSLQ+ GRY+ V PALR DYYAAV  R
Sbjct:   65 LDAVVLFGNLMDYHGALQRYSLQLLGRYVAVQPALRGDYYAAVSRR 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4261.10891.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KD69_9PHAE8.740e-1887.23RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YKV5_9STRA5.340e-1571.43RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CJY6_9STRA1.470e-1373.91RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4261contigH-paniculata_contig4261:2370..3067 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4261.10891.1mRNA_H-paniculata_contig4261.10891.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4261 2359..3067 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4261.10891.1 ID=prot_H-paniculata_contig4261.10891.1|Name=mRNA_H-paniculata_contig4261.10891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MEGEIGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPALRPDYYAAVINR
PVVAGATATADAGGAATAASAGNTHQSGSVSVHNEPSGRRTESMPGAGVT
PKAQTQGSGSLATVPAGGTAG
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