mRNA_H-paniculata_contig4230.10823.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4230.10823.1
Unique NamemRNA_H-paniculata_contig4230.10823.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4230.10823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4230contigH-paniculata_contig4230:4220..9727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size940
Cds size477
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4230.10823.1prot_H-paniculata_contig4230.10823.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4230 4220..9265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930286.6868477-CDS-H-paniculata_contig4230:4219..43221622930286.6868477-CDS-H-paniculata_contig4230:4219..4322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4230 4220..4322 -
1691481225.9036214-CDS-H-paniculata_contig4230:4219..43221691481225.9036214-CDS-H-paniculata_contig4230:4219..4322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4230 4220..4322 -
1622930286.7116582-CDS-H-paniculata_contig4230:4798..49441622930286.7116582-CDS-H-paniculata_contig4230:4798..4944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4230 4799..4944 -
1691481225.9159286-CDS-H-paniculata_contig4230:4798..49441691481225.9159286-CDS-H-paniculata_contig4230:4798..4944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4230 4799..4944 -
1622930286.7258368-CDS-H-paniculata_contig4230:9037..92651622930286.7258368-CDS-H-paniculata_contig4230:9037..9265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4230 9038..9265 -
1691481225.9287534-CDS-H-paniculata_contig4230:9037..92651691481225.9287534-CDS-H-paniculata_contig4230:9037..9265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4230 9038..9265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930286.742026-UTR-H-paniculata_contig4230:9265..97271622930286.742026-UTR-H-paniculata_contig4230:9265..9727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4230 9266..9727 -
1691481225.9389687-UTR-H-paniculata_contig4230:9265..97271691481225.9389687-UTR-H-paniculata_contig4230:9265..9727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4230 9266..9727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4230.10823.1

>prot_H-paniculata_contig4230.10823.1 ID=prot_H-paniculata_contig4230.10823.1|Name=mRNA_H-paniculata_contig4230.10823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MASDRKKGEMTAAAAAAAAERAEIEAAQKAFVPPPGYKRSIVPMTESRSC
MYDYGVRVEEIEPSTEIIPSSPKRRKISGRFFCMASKRCREQQVAIKVSN
MSTSPASDHLNGLHGVLPRRAALRTKGEAVPQAPGPAIAPAHPVSSQSAS
SLLPSPPPT
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mRNA from alignment at H-paniculata_contig4230:4220..9727-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4230.10823.1 ID=mRNA_H-paniculata_contig4230.10823.1|Name=mRNA_H-paniculata_contig4230.10823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5508bp|location=Sequence derived from alignment at H-paniculata_contig4230:4220..9727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCAGTCAGCAGGGTCAGTAGATAACGCGTGCGCATGGGTGTACCACC
TCTGTATGAGAAGCGTACTCTTGTGTATGGTGTGTTATTTTACCTCTGAA
CACCGACATATGTGACTCTGGGCTCTGGGCTATAAGAACAAATTGATCTG
TTACCCACTTACCCCGCTATTTTACGACTCACTGGAACTAAATAACAGAA
CAACAGGTGACCTTAACGTCGCTGTCATTCGCGGAAGGAAGGGTCGTGCC
AGGGCTACAGGCGGTGGAGGGATTAATTTCAAACATTCAAATTCTGCATA
TTGGGAAGGGAAGGGCGCACGTACGGTATGCCAGAAGCTGATTCTCAATC
TCGCGCAGCAGTAGCCGTTGCCGCCACGGCACCGTCTGGTGTGGCTCGTA
GCCGTGCAACGGCTCCATAGACTGCAGATCAGAAAAAACGAAGTGTAGCT
TGGAGATTGGATATGGCTTCGGATAGGAAGAAGGGAGAGATGACAGCAGC
GGCGGCGGCGGCGGCGGCTGAGAGAGCGGAGATCGAGGCTGCACAGAAGG
CGTTCGTGCCCCCGCCTGGGTACAAGAGATCTATTGTGCCTATGACCGAG
TCGAGATCATGCATGTATGACTATGGAGTGCGGGTGGAAGAGATCGAACC
TTCTACTGAGATTATCCCCAGCTCCCCCAAGCGGAGGAAGGTAAACGTTA
TGTGTCGATATGCTATTATTTCGACTTCAGAACTCAGTAAAATTAGTCTA
CCAGCAAGAATAAATGATCTGCAACTCTGTACCGTTCTCTCACATTACTG
TTGTTGTACGGACTATACTGTCGTACTTCATGCGCGTAGACTTCCAGCAC
AAGTCCACAGCTTTGTCGACAGCTGGCGGCGTGTTAGTGTGTGCCGCAGT
CGCAATTATGCGTACGGATCTACCGTGCTGACTGGGCTGACTTTGATGAT
AGCCAGTAAAGATAGTCACAGAGTGGCGTAAAAGAATAAATGCTCACATT
GAAAAGCTCTAATACTATAGACTGTTCTCTCATACTGACCGTTGTGCTTT
GTTAGACAGTTCTGTCATATTGACGGTTGTGCTCCTCTTCGTGTATGTAG
ATCGCGACTTGGATACCCTTTCAAACAGCTGGCGGAGTGATGGTGTGGTC
ATGCTATACTGGCTGTTGCGCGTGCGGTTTGCTGTGTTTGTTAGTTCTGT
ATTGCACTCGATTCTCTGTAGTAAAAGCCTGTTGTTCTACAGACAGGCTA
GCACAGGGAGTGATGACAGCAGTTATTCCGAAATGTTGGTTGTGCGATTG
TGAGGTAAAAGATGAGGCTAACAGACCTGTACTGACGTGCTATCGTGTAT
GGTAACTACCGACTTACTTGTTTCATGTTCGGTCTTTGTTGGTGGGATTA
TTGGAGTTTAACAGAGTAGATTGGCTGTGTACAGGTCGACATAGCTGTCG
ACACTGAATTGACCCTCGTACATAAATGGGGTGATTGAGAGCCTTCAGAA
GAAGATGTCAAATGTCGCTAACGGCCAATACCGACTGTCCGTTTGTATAT
TTTCTCCTCAGTGAAAAGAACAAAAGGTGTCCTATGCTAGTCTGATATAA
CCAACACCCTAGGTTTGCAAAGGTGTAGCGTTCCCATAAGGTATTATTAC
TCAGGATTGGGGTTACTAGTATTTCCAACAATACTGAAGGTGCCGCCGCT
CGGAAGGTGCGTGCTTTCATAATAATAGACGATACCTGTTTTTTTGGCTG
CGGTGGCGACTCAGAGAGGAGAGAGTGCCAGTTGTACCGAGCATGCTTTC
GACATGGAATTACTAAATCTGGGAGTTTTCGGGAGCTGCTTGCAAGGTGG
AAATTTGATATTTTCTACCAATACTCACATTAGTATATTTTTCTAGCGCC
ACGCAGCGTCGGTCTCACGAGGTAGGCACAAGCATATCGAATGTGCAGAC
AAAGCACAAACCTGTCACCTATCAGTGACAGAGTCGTGGTGTGTTTTTTG
GTCATTACAGGAGTGCTGCATCAGCAATCCCGACGACCATAATCACCGCA
GTCCTGTTGGATGCGCCGTCTGTGCCTTGGATTTTCCGGAGGCTGCAGTA
CCCCACGGTTTTTGTCGGTACAGCAGGGGTATAGACATCGGTTTAAAAGC
ACCGGCAACATGTCCAGCGTCTACGAATTTTTTTAGCCTGTTTTTCAGTG
TGCAATGCTCTCCTATGGTAGTCACAAGGCACAATGTAGCTCTCGCATTG
GTGGTTGATTTGCGTTGGGCACGGTGCAGGTGCGATGTTGGTGTTTGCAC
TTGCTAGATTTCAATTTTTCTAGTTTCCCGAGATTCCCGTTTGTCCATCT
CGGGAATCCGGGAAATTGGGCAATTTTGGCTTCAAACTTCCGCTCGAGAT
TTTCCTGATTTCATCATTTCGGCTCCAAACGTACCGGGGTTGGAAGTACT
AGTAGATGCGGCGTCGCGATGAAACGTTTTTGGGCTTCGGCGGCTACGGT
TGAACCGGTTTGACGGCCGCCGTTGCAGCCGCTGATTAGGTGCGAAGTCG
AGAGTGGCAGGCTAGTGTTGGGGGGGGGGAACTTTCAGAAGCCCAATCAA
GTCTCAGCCTGGCCCATGGGTCTGATCTTCAAAATATATGAAAAAAAGGG
GTAACAGCAAAAACAACTTCAAGAGGAACTCCTCTATTTTTCAAGTTTTT
TTCCATAAAACAGATATTACCCCAAACTGATATTACAATTCCAGATGTCC
CCGTTCGCGAGAATCGTTCGATACCCTGATCGCGCTACGAATCAGCTTGA
ACCCATAAGAGAGGTTGTACGTACGAAGTGCAGCCTTTTGAATGCCCTCG
GGGAGCAGAAATGAAGGCGAACGGACGCAAATGACTTTTTAACCCTCTAA
ATATTTCCATCCCGGCGGGCGAAAGCCTCCGGTGACTCGACCGAAGGCCT
GCTTCCGACGTCGCTGAATACAGAAGAACATTGCGATCCCGAATGAGCCG
TTGAGGCAATGAGTCCGTGTGGTATGGTTAATATTTCAGTTAAGCCATCA
CGGAATGCGGCATCAACTCCAAGAGATGCTCTCGGCAGACTAGGCGTTCC
TGACCACCATGTATTTTGTGTACTGTAAGGCCGCTGCTTATGGACGTCGT
TCAAACCCAATGGTGGCTGGAAAAAAATGGTTGGCAACAAACTCAGTATA
TCAACCCATGCAAGAATTGGCATGACGTCACCGTTCTGTGCCGTCCTGGC
GCGTGCGCAGTACGATTTTTAATTACAGTTTTCATCAATTCCGGCGTTGA
TTTTGCTCGCATTGGGGCACAAGAAGCTTGCGTGAGCCACAGAAAAAAAA
ATTGTCAATCGTTATTGTCGACCACATCGAAGCTCCCCTTACAGAGTTAG
GGTCGGAGCGGACTGTTTTTGCAGATTATACCGACATTCTCATGGGTAGG
TTATGCGAAATTTGATACCGCGGCATGAACTACAGTTGTCGCGCTTCGCC
TCTTGATGATAGGTGAAAAAATTGCGATCCTGCTAAAACAGCATCTGAGT
GTGACTTGGGAAATCAAACAACGCTACATTGTAACCATCCATGGAGTTTT
TTTCTTATCGTAAAAGTGGTGCCAATCGATGTGCTGTGTATGGGAGGGTA
CTCGCATGAGCATTTCTTAAAATCCGGAAGGGCCAGTTAGTTCTAGCGAC
AGCAGAATATATGCAAATTGAATATGATACAAACGCCACACAAGAGCACC
GCCAAACGCATGCAACGCTTTAAAAGCGCGGTATTGTTGGTGCAGTGCAC
CTGTGATAGCCACGCGGTAGATGTCCTACGCCTGTCGCGCTGATTGGCAT
AGAGTATACCGCGCGTGTCGCGCTTGATAAACGGTGTCTGCCGCCTGAAT
TTCGCGATGCATCAACAATCCCACGTTGATAACCGCATCGAAACGTCCAC
GTGTGGAAATCTGGGTCGTTCCAGCTGCTGGCCCTTGCCTGTTAGCGTGG
AGAAGTCGCTGCAGTAGTTCGTATTTAGGCAGAGATGACCGTAGCATCGC
GCAGGGCAGGCTTGACACCAGAATGCACAAATACTGAAAGATTCATGGTC
TACTTCGCTGTAATATCTATCCCTTCGATTCCTTGGCCAGTGTCCCAGAA
GCGGGATCTGAGGAGCTTCTATCTTCAGGACGTACACGAATACTTGACTA
TTTGAACGGAAGACTATTTTTCACGTGTCGACCAAGTTGCATCATTTGCA
GGCACATGAAATACAGTGTTCACCAACGTATGTTCGTGTGTACAGCATTT
GCCACAGTCGTGGATGGGTCAGGGCATATTTGGAATAAGCGTGCTCATCA
TGCTGAACCTTAAGCGAATACTTTCCTTCTTTCTTCTCGTCGAAACCGTT
CGAAACACTCGTATTCGTGGGGGGGGGACGCAGCGTCTTCTTGACGTCGT
AGTCGCCAGTCTTACGGGCAGCCCCGGTGATTATGGTTCCCGGGCAGGCG
AATGAATCCCCTTGCGATAGGTAGATACGGTTTGATGTATGGTTTTACAC
TCCTTGATTTATGTCGTCGCACACGTCCCGAAAGTTCAACCTCGACGGAA
CTGGTTGACTCTGGTGGAACGGACCCCGCCCCTGCCCCCACCCCCCCCTC
CTCGACCCCATTGCGCCTCCCCCAACCGGAATTCAAAACTCACCGAATGT
ATAGTCTCGTTGGATCGCACGATCATTTACCCACCCCTGGTGTTTTTCCT
GATCTTCGAATGGTGAATCCACGCGATTAATAGATTTCTGGGCGGTTCTT
TTGCATGGCTAGCAAGCGATGCCGGGAACAGCAGGTGGCCATTAAGGTTT
CTAATATGAGCACGTCTCCGGCCAGTGACCACCTGAATGGCTTGCACGGC
GTACTTCCGCGGAGGGCAGCGCTCCGAACGTGGGTAATCAAAACACTTTT
GAGAAACAGAACCGGTGTAGGTAGCTCTAGAGTCCTACTTGTGCAGATAT
TATCAGTGAATTTCCACTTTTCGTAGGTTTGTGCCAAAGAGGTGCAAGTA
AACTCGACTGTTGATAATGGTTCTGGTTCTGGTTCTGGTTCTGGTGCTGG
TGCTGGTGCTGGTGCTGGTTCTGGCATTTGTATCCTGTGGCGGCCTTTGA
AAAGTACCATGTTCGTATATGTATATAGCTTTACAGTATTTGTAATATGT
CCTTTTGTGGAGGAGTATACTGCATACTACTTATTATTATTACTTTTGTT
TCCTTCTTTTTGGTTCGCATTCTAGGGATGCCGAGTCATTAGCCACTTCT
CACCTCTGACCATTAACCGTCGCATGCCATATCACAATTGCACTCTAGTG
TTTGCGTGCTGACATGTTGTTTGATGTTTGACCATCGGGTGTGCCGCCGA
CACAGAAAGGGGGAGGCGGTGCCTCAAGCACCCGGTCCGGCCATAGCTCC
CGCTCACCCGGTTTCTTCCCAGAGCGCATCTTCCCTGCTCCCCAGCCCGC
CGCCGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig4230:4220..9727-

>mRNA_H-paniculata_contig4230.10823.1 ID=mRNA_H-paniculata_contig4230.10823.1|Name=mRNA_H-paniculata_contig4230.10823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig4230:4220..9727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTCGGATAGGAAGAAGGGAGAGATGACAGCAGCGGCGGCGGCGGC
GGCGGCTGAGAGAGCGGAGATCGAGGCTGCACAGAAGGCGTTCGTGCCCC
CGCCTGGGTACAAGAGATCTATTGTGCCTATGACCGAGTCGAGATCATGC
ATGTATGACTATGGAGTGCGGGTGGAAGAGATCGAACCTTCTACTGAGAT
TATCCCCAGCTCCCCCAAGCGGAGGAAGATGGCTTCGGATAGGAAGAAGG
GAGAGATGACAGCAGCGGCGGCGGCGGCGGCGGCTGAGAGAGCGGAGATC
GAGGCTGCACAGAAGGCGTTCGTGCCCCCGCCTGGGTACAAGAGATCTAT
TGTGCCTATGACCGAGTCGAGATCATGCATGTATGACTATGGAGTGCGGG
TGGAAGAGATCGAACCTTCTACTGAGATTATCCCCAGCTCCCCCAAGCGG
AGGAAGATTTCTGGGCGGTTCTTTTGCATGGCTAGCAAGCGATGCCGGGA
ACAGCAGGTGGCCATTAAGGTTTCTAATATGAGCACGTCTCCGGCCAGTG
ACCACCTGAATGGCTTGCACGGCGTACTTCCGCGGAGGGCAGCGCTCCGA
ACATTTCTGGGCGGTTCTTTTGCATGGCTAGCAAGCGATGCCGGGAACAG
CAGGTGGCCATTAAGGTTTCTAATATGAGCACGTCTCCGGCCAGTGACCA
CCTGAATGGCTTGCACGGCGTACTTCCGCGGAGGGCAGCGCTCCGAACAA
AGGGGGAGGCGGTGCCTCAAGCACCCGGTCCGGCCATAGCTCCCGCTCAC
CCGGTTTCTTCCCAGAGCGCATCTTCCCTGCTCCCCAGCCCGCCGCCGAC
CAAAGGGGGAGGCGGTGCCTCAAGCACCCGGTCCGGCCATAGCTCCCGCT
CACCCGGTTTCTTCCCAGAGCGCATCTTCCCTGCTCCCCAGCCCGCCGCC
GACC
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