mRNA_H-paniculata_contig4201.10774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 131 bits (330), Expect = 4.110e-34 Identity = 79/187 (42.25%), Postives = 109/187 (58.29%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSE 567
Y GC R+ AR LK+ Q Y Q + F VE I G LS+ D+ +EE+ +P RE +G+LMW AT TRPN+A A RAVAR+C +P + +A + I+ Y + T + G T+G G GLSME + D+D+ + R SVSGG VM +G ISW R Q+ T+EAEYV+L++
Sbjct: 13 YSGCVYERDWDARILKISQQTYAQELGMDFGVEYGKEILFPVGL-KLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLAD 193
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.440e-32 Identity = 76/187 (40.64%), Postives = 109/187 (58.29%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSE 567
Y GC R+ A LK+ Q Y + + F VE IP G LS+ D+ +EE+ +P RE +G+LMW AT TRP++A A+RAVAR+C +P + +A + I+ Y + T + G T+ G GLSME + D+D+ + R SVSGG+VM G ISW R Q+ T+EAEYV+L++
Sbjct: 57 YSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGM-KLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLAD 237
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE) HSP 1 Score: 129 bits (324), Expect = 4.020e-32 Identity = 77/187 (41.18%), Postives = 109/187 (58.29%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSE 567
Y GC R+ A LK+ Q Y + + F VE IP G LS+ D+ +EE+ +P RE +G+LMW AT TRP++A A+RAVAR+C +P + +A + I+ Y + T E G T+ G GLSME + D+D+ + R SVSGG+VM G ISW R Q+ T+EAEYV+L++
Sbjct: 99 YSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLAD 279
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 128 bits (321), Expect = 1.120e-31 Identity = 76/187 (40.64%), Postives = 109/187 (58.29%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSE 567
Y GC R+ A LK+ Q Y + + F VE IP G LS+ D+ +EE+ +P RE +G+LMW AT TRP++A A+RAVAR+C +P + +A + I+ Y + T + G T+ G GLSME + D+D+ + R SVSGG+VM G ISW R Q+ T+EAEYV+L++
Sbjct: 158 YSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLAD 338
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 128 bits (321), Expect = 5.300e-31 Identity = 76/187 (40.64%), Postives = 109/187 (58.29%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSE 567
Y GC R+ A LK+ Q Y + + F VE IP G LS+ D+ +EE+ +P RE +G+LMW AT TRP++A A+RAVAR+C +P + +A + I+ Y + T + G T+ G GLSME + D+D+ + R SVSGG+VM G ISW R Q+ T+EAEYV+L++
Sbjct: 332 YSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLAD 512
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 128 bits (321), Expect = 8.590e-31 Identity = 76/187 (40.64%), Postives = 109/187 (58.29%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSE 567
Y GC R+ A LK+ Q Y + + F VE IP G LS+ D+ +EE+ +P RE +G+LMW AT TRP++A A+RAVAR+C +P + +A + I+ Y + T + G T+ G GLSME + D+D+ + R SVSGG+VM G ISW R Q+ T+EAEYV+L++
Sbjct: 853 YSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLAD 1033
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 125 bits (315), Expect = 5.480e-30 Identity = 75/187 (40.11%), Postives = 109/187 (58.29%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSE 567
Y GC R+ A LK+ Q Y + + F VE IP G LS+ D+ +EE+ +P RE +G+L+W AT TRP++A ALRAVAR+C +P + +A + I+ Y + T + G T+G G LSME + D+D+ + R SVSGG+VM G ISW R Q+ T+EAEYV++++
Sbjct: 849 YSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-VLSEFDQ-----DEEVVSWPFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVAD 1029
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 124 bits (310), Expect = 5.670e-30 Identity = 74/189 (39.15%), Postives = 104/189 (55.03%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSESV 573
Y GC RN++ L + Q + +A + V +P SG LS D +E TEFP RE VG+LMW AT TRP++A A+RAVAR+C +P + A + I+ Y+ T +G ++ G G S++ Y D+DF + R SVSGG+V G +SW R Q+ T+EAEYVAL + V
Sbjct: 182 YSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA-----DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVV 364
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5JPC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC7_9PHAE) HSP 1 Score: 122 bits (306), Expect = 7.330e-30 Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSESV 573
Y GC RN++ L + Q + +A + V +P SG LS D +E TEFP RE VG+LMW AT TRP++A A+RAVAR+C +P + A + I+ ++ T +G ++ G G S++ Y D+DF + R SVSGG+V G +SW R Q+ T+EAEYVAL + V
Sbjct: 103 YSGCFYERNKETGRLTISQQTFTDELAAGYGVVGGKSVPMSSGV-KLSDFDA-----DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMGILGFARRTSHFGTSFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVV 285
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE) HSP 1 Score: 120 bits (301), Expect = 1.070e-29 Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 1
Query: 10 YMGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDEQKTSEEEEMTEFPNREAVGALMWTATMTRPNLACALRAVARFCENPGPAYKKAVIKIV*YSLHTMEWGATYG-GQGCGLSMEAYTDSDFEACVDTRCSVSGGVVMLAKGEISWHPRMQEITASGTSEAEYVALSESV 573
Y GC RN++ L + Q + +A + V +P SG LS D +E T+FP RE VG+LMW AT TRP++A A+RAVAR+C +P + A + I+ + T +G ++ G GLS++ Y D+DF + R SVSGG+V G +SW R Q+ T+EAEYVAL + V
Sbjct: 46 YSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA-----DEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVV 228 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4201.10774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4201.10774.1 >prot_H-paniculata_contig4201.10774.1 ID=prot_H-paniculata_contig4201.10774.1|Name=mRNA_H-paniculata_contig4201.10774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp MGCHVTRNRKARELKLDQHMYVQSMAETFVVEKTSRIPAMSGAPALSKGDback to top mRNA from alignment at H-paniculata_contig4201:5773..6348+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4201.10774.1 ID=mRNA_H-paniculata_contig4201.10774.1|Name=mRNA_H-paniculata_contig4201.10774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=576bp|location=Sequence derived from alignment at H-paniculata_contig4201:5773..6348+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4201:5773..6348+ >mRNA_H-paniculata_contig4201.10774.1 ID=mRNA_H-paniculata_contig4201.10774.1|Name=mRNA_H-paniculata_contig4201.10774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig4201:5773..6348+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |