mRNA_H-paniculata_contig4199.10767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4199.10767.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE) HSP 1 Score: 122 bits (307), Expect = 5.590e-27 Identity = 99/346 (28.61%), Postives = 160/346 (46.24%), Query Frame = 2
Query: 74 MWKPDEVVDEHRSWARRIWVLLLLGISALIVHLVIEAVQDRASPSKSFAVSDDKYDFPVVLVCLEDGSGCD-VESEDWDVDYCVKNAIG-----AADFAG----QRVNATVSTKENRSNCVEFDLSSFD--VGEGPQDPSSPTQAVVTMDW-PAGDGGGATNFM--------QSLSVYMVDGKTGQFSSQIYAPYSRIQYYVDGHSNTNIVHWIFLSIGRTNKQFLDKDKDHSFYSALTLSTVDKTHTADPMLTSNSSSSDGAETESYVHGNLFLEITQDPLSYWILKEIDPTDIEGLFGTVGGLWEFILLTWGLIFASSSGSSPHLRIRDFTEPFKK-VQGLLSG 1045
MWKPDEVV +H+ A +W +L+ GI +L+ +AV+ R +P S +S+ +++P + VCL GCD +E E+ + N G A + G Q ++ + CVEF S +GE ++ M W P G +T + Q + V++ D GQ S+++ PYS I HS T ++ IG T + L ++ S AL++ST H +P + + L L++ Q P S+ + E+DP D+ +FG VGG W+ +++ W + F ++S PHL+ R+F E K + GL G
Sbjct: 1 MWKPDEVVPQHKRRAVALWAILIGGIIFYSSYLLHKAVRKRDAPESSIELSNTVFEYPDIWVCLYADYGCDELELEEECMTSATANMTGWGNSSAVYYPGGEYEQEIHVEGRETPDHGWCVEFQTSKITRFLGEERDASRFLDHLLLDMYWYPGGLETDSTTCVIEGWKTHNQWMYVFLNDPALGQVSTRVPVPYSCITNVSSSHSFT------YVGIGLTTEIKLGQEPIVS-NKALSVSTATVKHEVNPAIVKP-------------YAQLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFWDLLMIIWPIFFVAASRQDPHLKPRNFKESVTKGLSGLRIG 326
BLAST of mRNA_H-paniculata_contig4199.10767.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI) HSP 1 Score: 121 bits (303), Expect = 7.850e-26 Identity = 103/389 (26.48%), Postives = 171/389 (43.96%), Query Frame = 2
Query: 74 MWKPDEVVDEHRSWARRIWVLLLLGISALIVHLVIEAVQDRASPSKSFAVSDDKYDFPVVLVCLEDGSGCDVESEDWDVDYCVKNAI---GAADFA--------GQRVNATVSTKENRSNCVEFDLSSFDVGEGPQDPSSPTQAVVTMDW-PAGDGGGATNFM----------QSLSVYMVDGKTGQFSSQIYAPYSRIQYYVDGHSNTNIVHWIFLSIGRTNKQFLDKDKDHSFYSALTLSTVDKTHTADPMLTSNSSSSDGAETESYVHGNLFLEITQDPLSYWILKEIDPTDIEGLFGTVGGLWEFILLTWGLIFASSSGSSPHLRIRDFTEPFKKVQGLL---------------------SGTRSKSVNGE--EAIPEWDTTAT 1105
MWKP EV+ +H+ A +++ L++ I A LV AV+ +PS SF +S++ Y +P VCL + GCD + + ++C + G + A Q + T + R CV F+ S+ D+ +G +DP ++ M W P G +T + +S+ +++ D TG S+ I YS + H T ++ IG T + L +D S+ + T S + K D + G + + L +EI Q S + EI+P +I LFG VGG W+ +L+ W + F S+S PHL++R+F + + ++ G+R + GE E P W+T T
Sbjct: 1 MWKPAEVLPQHKRRAVTLFITLIVAILAYSGLLVYNAVKKSKNPSTSFVLSNNVYRYPDTYVCLYNFFGCDDMALE---EFCASSVFDTEGGSSTAVFNPGGDLEQEIATTAYLTDERGWCVSFETSAVDIVDGERDPED--YILLNMYWYPGGTANASTTCISEEGEWESHSESVFMFLRDSDTGILSAGIQVAYSCMTSESSSHVFT------YMGIGLTKEDKLYEDDTASYKALETSSAIYKDKRTDNIT--------GIASP---YAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQDPHLKVRNFKKSVTRGSEVVVDLSRRVNSASIEIPHPLRRQPGSRQSNATGEDGEPPPAWETGGT 367
BLAST of mRNA_H-paniculata_contig4199.10767.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI) HSP 1 Score: 116 bits (290), Expect = 2.790e-24 Identity = 96/365 (26.30%), Postives = 159/365 (43.56%), Query Frame = 2
Query: 74 MWKPDEVVDEHRSWARRIWVLLLLGISALIVHLVIEAVQDRASPSKSFAVSDDKYDFPVVLVCLEDGSGCDVESEDWDVDY-CVKNAIG---------AADFAG----QRVNATVSTKENRSNCVEFDLSSF-------------------DVGEGPQDPSSPTQAVVTMDWPAGDGGGATNFMQSLSVYMVDGKTGQFSSQIYAPYSRIQYYVDGHSNTNIVHWIFLSIGRTNKQFLDKDKDHSFYSALTLSTVDKTHTADPMLTSNSSSSDGAETESYVHGNLFLEITQDPLSYWILKEIDPTDIEGLFGTVGGLWEFILLTWGLIFASSSGSSPHLRIRDFTEPFKKVQGLLSGTRSKSVNG 1069
MW+PDEVV +H+ A +W +L+ GI +L+ AV+ R +P S +S+ +++P + VCL GCD +W+++ C+ +A G A + G Q ++ N CVEF S D+ P + + V W + Q + V++ D ++ + S+ I PYS I HS T ++ IG T + L ++ + AL++ST +P + + L L+ Q+P S I+ E+DP D+ +FG VGG W+ +++ W + F ++S PHL+ R+FT+ K G L SK G
Sbjct: 73 MWRPDEVVPQHKRRAVALWTILIGGIIFYSSYLLYTAVRKRENPDASIELSNTVFEYPDIWVCLYVAYGCD----EWELENECMTSATGNRTGWGNSSAVYYPGGVYEQEIHVEGKLTPNNGWCVEFQTSKITRFLDRERDAKYYLDYLLLDMYWYPGGLEADSNTCVVEGWKTHN--------QWMYVFLNDPESERVSTGIQVPYSCITNVSSSHSFT------YVGIGVTIEDKLGQEPIVN-NKALSVSTATVKDEVNPAIVKP-------------YAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFTKSVTKGLGGLRIGDSKHPGG 405
BLAST of mRNA_H-paniculata_contig4199.10767.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI) HSP 1 Score: 109 bits (272), Expect = 2.650e-22 Identity = 104/377 (27.59%), Postives = 176/377 (46.68%), Query Frame = 2
Query: 74 MWKPDEVVDEHRSWARRIWVLLLLGISALIVHLVIEAVQDRASPSKSFAVSDDKYDFPVVLVCLEDGSGCDVESEDWDVDY-CVKNA-------IGAADFAGQRVNATVS-----TKENRSNCVEFDLSSFDVGEGPQDPSSPTQAVVTMD---WPAGDGGGATNFM--------QSLSVYMVDG---KTGQFSSQIYAPYSRIQYYVDGHSNTNIVHWIFLSIGRTNKQFLDKDKDHSFYSALTLSTVDKTHTADPMLTSNSSSSDGAETESYVHGNLFLEITQDPLSYWILKEIDPTDIEGLFGTVGGLWEFILLTWGLIFASSSGSSPHLRIRDFTEPFKK-VQGL------LSGTR---SKSVNGEEAIPEWD 1093
MW+PDEV+ +H+ A +W +L+ GI ++ +A+ R +PS SF VS+ Y++P + VCL GCD W+++ C+++A A + G T+ T E+ CVEF+ S+ G + +S + +D +P G + + + + V + D ++G S+ I PYS I HS T ++ +G T ++ L ++ + AL++ST TH + A + Y L L+ Q+P S ++ E DP D+ +FG VGG W+ ++L W + F ++S PHL+ R+F + K ++GL +GTR S + EE P W+
Sbjct: 1 MWRPDEVLPQHKRRAVALWTVLIGGIILYSSLILYQALGKRNNPSVSFEVSNTVYEYPDIWVCLYGEYGCD----SWELEEECMESAQLTGWGNTSAVFYPGGEYEQTIPGVGMLTPED-GWCVEFETSTISQFLGQERNASYYLDYLLLDMYWYPGGTESDSNTCVVEGWEPHSEWMYVKLKDSGYPESGLVSTGIQVPYSCITNVSSSHSFT------YVGMGVTIEERLGEEPVAT-NKALSVSTA--TH---------KDKVNAAIDKPYAQ--LSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLEGLRIGELVTAGTRKDGSSNPEDEEEKPHWE 352
BLAST of mRNA_H-paniculata_contig4199.10767.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 5.440e-18 Identity = 106/397 (26.70%), Postives = 167/397 (42.07%), Query Frame = 2
Query: 74 MWKPDEVVDEHRSWARRIWVLLLLGISALIVHLVIEAVQDRASPSKSFAVSDDKYDFPVVLVCLEDGSGCD--------VESEDWDVDYCVKNAIGAADFAGQRVNAT---------VSTK------ENRSNCVEFDLSSFDVGEGPQ-DPSSPTQAVVT-MDW-PAG-----------DGGGATNFMQSLSVYMVDGK-TGQFSSQIYAPYSRIQYYVDGHSNTNIVHWIFLSIGRTNKQFLDKDKDHSFYSALTLSTVDKTHTADPMLTSNSSSSDGAETESYVHGNLFLEITQDPLSYWILKEIDPTDIEGLFGTVGGLWEFILLTWGLIFASSSGSSPHLRIRDFTEPFKKVQGLLSGTRSKSVNG------EEAIPEWDTTATRMEDGTLQE 1132
MWKPDEVV +HR AR +W ++++GI + LV + V+ SP+ S +S+ Y +P + VC + GCD VES W+ + NAI + G NAT V T + R CVEF S+ G + DP ++ M W P+G DG + + ++ D + S+ + YS I H ++ IG TN+ D D S Y A+++++ AD +T + L +E+ Q S+ I+ E DP + + G +GG W+ IL+ W L F ++S P+L+ R+F + + SG N E +T+ +EDG +E
Sbjct: 1 MWKPDEVVPDHRRRARVLWAIMMVGIVTYVGWLVYKTVERTKSPNTSVELSNVVYTYPDLWVCPYNQYGCDDITLELGCVESS-WETEAGPPNAI-FYNSEGTDQNATDPLEIEATWVDTSAIEGIVKGRGLCVEFKTSAATAFVGQERDPDEYLDYILLDMYWYPSGNETTDSTTCVEDGEEWEPHREWVYAFLTDPEDVTMVSTAVQLSYSCITSASTSHVFNSV------GIGLTNQIKYAAD-DVSSYKAVSINSGVYKDQADADITKP-------------YARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSVTRTVERASGITKTVANSGPMRRVESIEMRNETSGASLEDGFQEE 375
BLAST of mRNA_H-paniculata_contig4199.10767.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 3.230e-12 Identity = 90/406 (22.17%), Postives = 160/406 (39.41%), Query Frame = 2
Query: 74 MWKPDEVVDEHRSWARRIWVLLLLGISALIVHLVIEAVQDRASPSKSFAVSDDKYDFPVVLVCLEDGSGC-----------------------DVESEDWDVDYCVKNAIGAADFAGQRVNATVSTKENRSNCVEFDLSSFDV------GEGPQDPSSPTQAVVTMDWPAGDGGGATNFMQSLSVYMVD-----GKTGQFSSQIYAPYSRIQYYVDGHSNTNIVHWIFLSIGRTNKQFLDKDKDHSFYSALTLSTVDKTHTADPMLTSNSSSS---------DGAETESYVHGNLFLEITQDPLSYWILKEIDPTDIEGLFGTVGGLWEFILLTWGLIFASSSGSSPHLRIRDFTEPFKKVQGLLSGTRSKSVNGEEAIPEWDTTATRMEDGTLQEIKRDGTNRWT 1162
+W P VV HR A IW+ L+L A I +V +AV+ R P+ SF + + + FP + VC+ GC + E E + ++ A + RV T N++ D++ F E P D P + + G + Q ++++ VD G+ + PY R+ G + H S T Q ++ + + ++ S+ K DP T SS+ D E + + N+F+ Y ++++DP D + G +GG+W+F+++ +GL F S P +IR+F + K +++ S + + + P+ + A+ ED + +KR N T
Sbjct: 35 LWLPRTVVKRHRRKATIIWISLILAFLAYIAFIVWDAVESRTDPAASFELKLEVFTFPDLAVCVSQYEGCLTYPPSDCFVNASFTMFGQYGFMEAELEADEASLAIQEA-----YPHCRVLPTSKLTVNQTGIENGDINHFYAIFGLLWDEDPHDDFDPAVELAST--------GVSINTQFVNLFFVDVDLGVEAIGEELTDAKLPYDRLSPTTSGSMVGTMSH--MKSCWATTGQVIEMTQ----FQPISTSSGQK---QDPQRTFTQSSTSATVNWYNPDFDEELAALLFNMFIP----KFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANSRDPTTPDVEIDASN-EDLPIGWVKRQRKNGTT 413
BLAST of mRNA_H-paniculata_contig4199.10767.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 7.290e-5 Identity = 34/122 (27.87%), Postives = 60/122 (49.18%), Query Frame = 2
Query: 860 YWILKEIDPTDIEGLFGTVGGLWEFILLTWGLIFASSSGSSPHLRIRDFTEPFKKVQGLLSGTRSKSVNGEEAIPEWDTTATRMEDGTLQEIKRDGTNRWTVSGNSPIANGVPQPLPTAEVH 1225
Y ++++DP D + G +GG+W+F+++ +GL F S P +IR+F + K ++ S + + + IP+ + T ED + +KR N T N P+ + PT E H
Sbjct: 345 YTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASSRDPTIPDVEID-TSNEDLPIGWVKRQRKNGTTYYYN-PLTGDARENSPT-EAH 463 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4199.10767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4199.10767.1 >prot_H-paniculata_contig4199.10767.1 ID=prot_H-paniculata_contig4199.10767.1|Name=mRNA_H-paniculata_contig4199.10767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=399bp MWKPDEVVDEHRSWARRIWVLLLLGISALIVHLVIEAVQDRASPSKSFAVback to top mRNA from alignment at H-paniculata_contig4199:4138..15425- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4199.10767.1 ID=mRNA_H-paniculata_contig4199.10767.1|Name=mRNA_H-paniculata_contig4199.10767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11288bp|location=Sequence derived from alignment at H-paniculata_contig4199:4138..15425- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4199:4138..15425- >mRNA_H-paniculata_contig4199.10767.1 ID=mRNA_H-paniculata_contig4199.10767.1|Name=mRNA_H-paniculata_contig4199.10767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at H-paniculata_contig4199:4138..15425- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |