mRNA_H-paniculata_contig4198.10765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4198.10765.1
Unique NamemRNA_H-paniculata_contig4198.10765.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A6H5L179_9PHAE (Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L179_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.350e-23
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRYVEPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPFLSLDK 198
            M+TG APFQGR VGDTL+NAR+GRY  PEGLSD A DFLA ML LDP RR+ VE+AA HPFL LDK
Sbjct:  258 MLTGRAPFQGRRVGDTLANARSGRYAVPEGLSDTARDFLASMLSLDPRRRMRVEEAAAHPFLRLDK 323          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: D7FZ88_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ88_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.560e-23
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRYVEPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPFLSLDK 198
            M+TG APFQGR VGDTL+NAR+GRY  PEGLSD A DFLA ML LDP RR+ VE+AA HPFL LDK
Sbjct:  260 MLTGRAPFQGRRVGDTLANARSGRYAVPEGLSDIARDFLASMLSLDPRRRMRVEEAAAHPFLRLDK 325          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A058Z2V4_FONAL (CAMK/CAMKL/BRSK protein kinase n=2 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z2V4_FONAL)

HSP 1 Score: 55.1 bits (131), Expect = 5.810e-7
Identity = 25/74 (33.78%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRYVEPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPFLSLDKNADVFKAN 222
            ++TG  PF    +   LS  +AG Y  P  LS+ A D + RMLE+DP RR+++++   HP+ +++     ++ N
Sbjct:  200 LLTGNLPFDDDNIRRLLSKVKAGVYFMPPSLSEGARDLIKRMLEVDPERRITMQELIQHPWFNMNGPTSHYRQN 273          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A7R9ZYL7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZYL7_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 9.640e-7
Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 1
Query:   19 PFQGRLVGDTLSNARAGRYVEPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPFLSLD 195
            PF    + D     +AG Y  P+ +S  A D LARML +DP RR++++Q  +HP+ + D
Sbjct:  122 PFNADSIPDLFKRIQAGHYCVPDHISKEAKDLLARMLTVDPARRITLQQLVLHPWFARD 180          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A168P480_ABSGL (Protein kinase domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168P480_ABSGL)

HSP 1 Score: 53.9 bits (128), Expect = 1.510e-6
Identity = 22/61 (36.07%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRYVEPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPF 183
            ++TG  PF    +   L   +AG+Y  P+ +S +A D + R+L +DP++RL++EQ   HP+
Sbjct:  288 LLTGHLPFDDENIRQLLKKVKAGKYAMPDDISRSAQDLIRRILVVDPLKRLTMEQIMAHPW 348          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A7E4UT80_PANRE (Uncharacterized protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4UT80_PANRE)

HSP 1 Score: 53.5 bits (127), Expect = 2.100e-6
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRY----VEPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPFLS 189
            +++G++PF G    +TL+N  AGR+     E   +S  A DFL++++ LDP+ RLSV+QA  H +LS
Sbjct:  845 LLSGLSPFLGDNDDETLANVVAGRFNLGVSELADISPEAKDFLSKLMLLDPVHRLSVDQALQHDWLS 911          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A1I7S952_BURXY (Protein kinase domain-containing protein n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7S952_BURXY)

HSP 1 Score: 53.1 bits (126), Expect = 2.670e-6
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRY-VEPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPFLSLDKNAD 207
            ++TG++PF G    +TL+N   G Y ++ + +S+ A DF+ R+L +DP +R+SV+QA  H +LS    AD
Sbjct:  185 LLTGVSPFLGNDDRETLTNIVNGNYSLDSKNISNPAKDFIRRLLLVDPGKRMSVDQALSHEWLSGPALAD 254          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A7S3CKP5_9SPIT (Hypothetical protein n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CKP5_9SPIT)

HSP 1 Score: 53.1 bits (126), Expect = 2.730e-6
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRYVEPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPFL 186
            ++TG  PF GR   +     ++G +V P  LS    DF+ RM+E+DP +R++  QA  HPF+
Sbjct:  223 LLTGRMPFDGRDQPEVFGKIKSGVFVMPSKLSPECQDFIKRMIEVDPSKRITSLQAMQHPFI 284          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A3P6SH89_LITSI (Uncharacterized protein n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6SH89_LITSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.310e-6
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRYV----EPEGLSDAANDFLARMLELDPIRRLSVEQAAVHPFL 186
            +++G++PF G    +T+ N     Y     E E +S+AA DF++++L LDP  RLSV+QA  HP++
Sbjct:  124 LLSGVSPFLGDTDNETVRNVMLANYAFDIEEFEEISNAAKDFISKLLVLDPSDRLSVDQALHHPWI 189          
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Match: A0A2P6NXH1_9EUKA (Myosin light chain kinase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXH1_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 9.290e-6
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    1 MVTGIAPFQGRLVGDTLSNARAGRYVEP----EGLSDAANDFLARMLELDPIRRLSVEQAAVHPFLSLDKNAD 207
            ++ G  PF G  + D +       +  P    + +SDAA DF++++L +DP  R S EQA  HP+L+L+K +D
Sbjct:  266 LLAGFPPFMGEKLTDIVEQILEADFSFPSPYWDDVSDAAKDFVSKLLVIDPRARFSAEQALNHPWLALEKASD 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4198.10765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L179_9PHAE3.350e-2374.24Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FZ88_ECTSI4.560e-2374.24Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A058Z2V4_FONAL5.810e-733.78CAMK/CAMKL/BRSK protein kinase n=2 Tax=Fonticula a... [more]
A0A7R9ZYL7_9DINO9.640e-738.98Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A168P480_ABSGL1.510e-636.07Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A7E4UT80_PANRE2.100e-641.79Uncharacterized protein n=1 Tax=Panagrellus redivi... [more]
A0A1I7S952_BURXY2.670e-640.00Protein kinase domain-containing protein n=1 Tax=B... [more]
A0A7S3CKP5_9SPIT2.730e-638.71Hypothetical protein n=1 Tax=Strombidium rassoulza... [more]
A0A3P6SH89_LITSI5.310e-639.39Uncharacterized protein n=1 Tax=Litomosoides sigmo... [more]
A0A2P6NXH1_9EUKA9.290e-635.62Myosin light chain kinase n=1 Tax=Planoprotosteliu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4198contigH-paniculata_contig4198:9852..10725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue8.1e-19
Seed eggNOG ortholog2880.D7FZ88
KEGG koko:K06660,ko:K08863
KEGG Pathwayko04068,ko04111,ko04113,map04068,map04111,map04113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of centriole replication
EggNOG OGsKOG0575@1,KOG0575@2759
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-06_008930.1
EC2.7.11.21
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Exons2
Model size238
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930277.2881355-CDS-H-paniculata_contig4198:9851..99531622930277.2881355-CDS-H-paniculata_contig4198:9851..9953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4198 9852..9953 -
1691481221.8077776-CDS-H-paniculata_contig4198:9851..99531691481221.8077776-CDS-H-paniculata_contig4198:9851..9953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4198 9852..9953 -
1622930277.3079054-CDS-H-paniculata_contig4198:10590..107251622930277.3079054-CDS-H-paniculata_contig4198:10590..10725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4198 10591..10725 -
1691481221.8295028-CDS-H-paniculata_contig4198:10590..107251691481221.8295028-CDS-H-paniculata_contig4198:10590..10725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4198 10591..10725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4198.10765.1prot_H-paniculata_contig4198.10765.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4198 9852..10725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4198.10765.1

>prot_H-paniculata_contig4198.10765.1 ID=prot_H-paniculata_contig4198.10765.1|Name=mRNA_H-paniculata_contig4198.10765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MVTGIAPFQGRLVGDTLSNARAGRYVEPEGLSDAANDFLARMLELDPIRR
LSVEQAAVHPFLSLDKNADVFKANGRYTP
back to top

mRNA from alignment at H-paniculata_contig4198:9852..10725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4198.10765.1 ID=mRNA_H-paniculata_contig4198.10765.1|Name=mRNA_H-paniculata_contig4198.10765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=874bp|location=Sequence derived from alignment at H-paniculata_contig4198:9852..10725- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAACGGGGATTGCACCCTTTCAAGGGAGGCTAGTCGGGGATACGTT GTCCAACGCGCGAGCGGGTCGGTACGTTGAGCCCGAAGGGCTCTCTGATG CGGCCAACGACTTTTTGGCGCGCATGCTGGAACTGGTGAGAATTGTACTA TACTTTTGGGTATTATTGGTGGAGGTGCGACGAGGGTTATCAGTTGGTTT CCCAGTGTGTACGTGTGTGTGTGTGTGTGTTTCAACCTAGGCTTTGTATG CTGCACGTGCGTACAATGTAGTTTTTAGCTTTTGTTGTAGACCTACAGCA CGCAGATATCGTTCTCGTTTGTTTTGGCACCACCTGATGTCTGGTCATCG TGTCTAGAGTTTTTTTTTTTGTAGCACCTCTATAGGTAACTCTCTCCACC TCGAGCTGCAAACTTGATTCTTGCTTTGGAACACCTTGCTGCAGGTCGAA TTCTATCTGGAATGCGATATGGTGACAGTATCTAGGGAGAGCTGGGTCGC GCAGCGTATTGATGAACAATTTTCTTCAAAATAGCAATGCCCACTGAGCT CAGTGAGGTTCCGAGAAAGGTAGTATTGCAGAAAAGCTGAACAACAATAT AGACAAGAAGTCGAGCGGTTTTGAGGGGGAAAAGAGGGGGCAGAGGATTC CCGAGTTGGTTGTCGTGGCCGCCGGCGACTTTTCTTCCGCCTGCGAGTGC TTTCGAGAGTGGTCTACACCAGTGGTTCCGAAAAAAAAACACCGCCGGTT GTTTGTTTTGCTCACGTCGCAGGATCCAATTCGCCGGCTGAGCGTGGAAC AAGCCGCGGTCCACCCGTTCCTTAGCCTGGACAAGAACGCGGATGTTTTT AAGGCAAACGGTCGCTATACGCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4198:9852..10725-

>mRNA_H-paniculata_contig4198.10765.1 ID=mRNA_H-paniculata_contig4198.10765.1|Name=mRNA_H-paniculata_contig4198.10765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig4198:9852..10725- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAACGGGGATTGCACCCTTTCAAGGGAGGCTAGTCGGGGATACGTT
GTCCAACGCGCGAGCGGGTCGGTACGTTGAGCCCGAAGGGCTCTCTGATG
CGGCCAACGACTTTTTGGCGCGCATGCTGGAACTGATGGTAACGGGGATT
GCACCCTTTCAAGGGAGGCTAGTCGGGGATACGTTGTCCAACGCGCGAGC
GGGTCGGTACGTTGAGCCCGAAGGGCTCTCTGATGCGGCCAACGACTTTT
TGGCGCGCATGCTGGAACTGGATCCAATTCGCCGGCTGAGCGTGGAACAA
GCCGCGGTCCACCCGTTCCTTAGCCTGGACAAGAACGCGGATGTTTTTAA
GGCAAACGGTCGCTATACGCCAGATCCAATTCGCCGGCTGAGCGTGGAAC
AAGCCGCGGTCCACCCGTTCCTTAGCCTGGACAAGAACGCGGATGTTTTT
AAGGCAAACGGTCGCTATACGCCA
back to top