mRNA_H-paniculata_contig4193.10759.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4193.10759.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI) HSP 1 Score: 520 bits (1338), Expect = 2.550e-158 Identity = 295/449 (65.70%), Postives = 332/449 (73.94%), Query Frame = 1
Query: 1 GDKYVYAMVAMVKNVDFLVLRTRCSLAAGDPTSALQWVGIALAVSTDSRQLGNEGRLMYLRGRCYQMLLLQTPEEDPLDDSGSSYTVTAPANXXXXXXXXXXXXKSAKQKDSRYGGAADEAFNLAFEYFRTADDVYHQQAKSMARGVEMQLSRVFAEVALRQVPLKDVAMGQGPSVVRGLEPRAARSLGLAGDAGEPLLLALALLNAAEVSWLLGRQVSSYQAWKEAAGLLSLVHLQRQEVAPAGPGSIGGGMDNEATDHGRTPGPGTAADG-RPVLIMDMTGGINGSKRSHRTAGTPLRAPAFPTVAFPPSMMLKVHGLLQRATRLSFVLSGPPPAHAVATAQVLSNPLVAAALPNSTHLLAGWALLDGWVKLYPSQDKATQKRXXXXXXXXXXXXXXXXXXXSPSFASVGQTFMRRTSRSNSPSRTPMTSTTYNKSPLSPTIVTDMD 1344
GDKYVY MVAMVKNVDFLVLR RCS+AAGDPTSALQW+GIALAVSTDSRQLGNEGRLMYLRGRCYQ+ + QT EE +DD+G + T +A K A + S+Y G A+EAFNLA +YF +ADDVYHQ AK ARGVEMQLSRVFAEVA+RQVPLK+ AM QG +V++GLE RAA SLGLAGDAGEPLLLALALLNAAEV+WL+GR + YQAWKEAAGLLSL+HLQRQEV PA GS+G +N + H R GP G R M +GS+R+HR AGTPLRAPAFPT++FPPSMMLK+HGLLQRATRL+FVLSGPPPAHA + LSNPLVAAALPNSTHLLAGWALLDGWVKLYPS+DKAT KR S S+GQ +R SRSNSP P T Y KSP SPT VTD +
Sbjct: 2334 GDKYVYEMVAMVKNVDFLVLRARCSIAAGDPTSALQWIGIALAVSTDSRQLGNEGRLMYLRGRCYQLHMAQTLEEHAMDDAGCAETASAST---VSASGQLDREKFAASETSKYAGKAEEAFNLALDYFCSADDVYHQ-AKCKARGVEMQLSRVFAEVAIRQVPLKEAAMNQGAAVLKGLESRAASSLGLAGDAGEPLLLALALLNAAEVNWLMGRVLQCYQAWKEAAGLLSLIHLQRQEVTPA-QGSMG--ANNGSAGHSRPGGPSAQRGGQRDPSAMAGETLSSGSRRTHRPAGTPLRAPAFPTISFPPSMMLKIHGLLQRATRLAFVLSGPPPAHASS----LSNPLVAAALPNSTHLLAGWALLDGWVKLYPSEDKATHKRHHRRGGGRRHARATGRNALS----SIGQAIAKRASRSNSP---PAERTAYVKSPPSPTTVTDTE 2764
BLAST of mRNA_H-paniculata_contig4193.10759.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE) HSP 1 Score: 498 bits (1281), Expect = 9.480e-151 Identity = 426/781 (54.55%), Postives = 481/781 (61.59%), Query Frame = 1
Query: 1 GDKYVYAMVAMVKNVDFLVLRTRCSLAAGDPTSALQWVGIALAVSTDSRQLGNEGRLMYLRGRCYQMLLLQTPEEDPLDDSGSSYTVTAPANXXXXXXXXXXXXKSAKQKDSRYGGAADEAFNLAFEYFRTADDVYHQQAKSMARGVEMQLSRVFAEVALRQVPLKDVAMGQGPSVVRGLEPRAARSLGLAGDAGEPLLLALALLNAAEVSWLLGRQVSSYQAWKEAAGLLSLVHLQRQEVAPAGPGSIGGGMDNEATDHGRTPGPGTAADG-RPVLIMDMTGGINGSKRSHRTAGTPLRAPAFPTVAFPPSMMLKVHGLLQRATRLSFVLSGPPPAHAVATAQVLSNPLVAAALPNSTHLLAGWALLDGWVKLYPSQDK-------------ATQKRXXXXXXXXXXXXXXXXXXXSPSFASVGQTFMRRTSRSNSPSRTPMTSTTYNKSPLSPTIVTDMDQKHQATSTXXXXXXXXKNPGIRHSSPPFSSSYEDAVPPAVPDATSVIVHKGSGSXXXXXXXXXXXXXGVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIAGDGRRSQGSAIAGVGSTGSAGGGEREVRPSPFTEMSHMAPLAKPMAQMPLTVFRKDRGHQPVVLLARSSSLEGSTVSDALRSEGGGTNS------NRRDGGAPGQGRRQGHVRKRSEGSSVRGSEENTRRPGFSREERSHRLIQDFDKV 2283
GDKYVY MVAMVKNVDFLVLR RCS+AAGDPTSALQW+GIALAVSTDSRQLGNEGRLMYLRGRCYQ+ + QT EE +DD+G + T +A K A + S+Y G A+EAFNLA +YF +ADDVYHQ AK ARGVEMQLSRVF EVA+RQVPLK+ AM QG +V++GLE RAA SLGLAGDAGEPLLLALALLNAAE AWKEAAGLL L+HLQRQEV PA GS+G +N + H R GP G R M +G +R+HR AGTPLRAPAFPT++FPPSMMLK+HGLLQRATRL+FVLSGPPPAHA + LSNPLVAAALPNSTHLLAGWALLDGWVKLYPS+DK AT KR +F+S+GQ +R SRSNSP P T KSP SPT VTD D S + P + ++ S+ DAT+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX S + G R S +A A AG R V + F+EMS MAPLAKPM + H V+ LARSSSLEGST+SD LRSEG G ++ NRRDGG GQ R + H RKRSEGS G E +R SREE+ LIQ++ KV
Sbjct: 1960 GDKYVYEMVAMVKNVDFLVLRARCSIAAGDPTSALQWIGIALAVSTDSRQLGNEGRLMYLRGRCYQLQIAQTLEEHAMDDAGCAETASAST---VSASGQLDREKFAASETSKYAGKAEEAFNLALDYFCSADDVYHQ-AKCKARGVEMQLSRVFTEVAIRQVPLKEAAMNQGAAVLKGLESRAASSLGLAGDAGEPLLLALALLNAAE-------------AWKEAAGLLGLIHLQRQEVTPA-QGSMG--ANNGSAGHSRPGGPNAQRGGQRDPSAMAGETLSSGGRRTHRPAGTPLRAPAFPTISFPPSMMLKIHGLLQRATRLAFVLSGPPPAHASS----LSNPLVAAALPNSTHLLAGWALLDGWVKLYPSEDKVTXXXXXXXXXXXATHKRHHRRGGGRRHARVTGRN----AFSSIGQAIAKRASRSNSP---PAERTASVKSPRSPTTVTDTDSLTPQVSVAGIPPTT-RRPSFKLNTLEGSAGL---------DATAAXXX-------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRDMVLVTPXXXXXXXXXXXXXXXXXELAGVAADDRMHRRKFSRDSAAGSAVGGPRRVSAATAAAMA-----AGREGRVVDFTGFSEMSLMAPLAKPMVP---------QSHSSVMSLARSSSLEGSTISDHLRSEGPGADTWAGGGGNRRDGGGAGQARPR-HERKRSEGS---GFEWASRWTDISREEKGKWLIQEYGKV 2662
BLAST of mRNA_H-paniculata_contig4193.10759.1 vs. uniprot
Match: A0A836CI77_9STRA (DENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI77_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 5.400e-17 Identity = 82/253 (32.41%), Postives = 109/253 (43.08%), Query Frame = 1
Query: 523 SVVRGLEPRAARSLGLAGDAGEPLLLALALLNAAEVSWLLGRQVSSYQAWKEAAGLLSLVHLQRQEV---------------APAGPGSIGGGMDNEA--------TDHGRTPGPGTAADGRP------------------------VLIMDMTGGINGSKRSHRTAGTPLRAPAFPTVAFPPSMMLKVHGLLQRATRLSFVLSGPPPAHAVATAQVLSNPLV-AAALPNSTHLLAGWALLDGWVKLYPSQDK 1137
SV+ E AA +L LAGD PLLL L LLN AE+ WL GR +YQAWKEA LL++ LQRQ+ AG + G ++ A + R P T P + P+ PTV PS +++V+GLL R R+SF+++G PP ++ + S P+V A+ALPN THLLAGW LD V+ Y K
Sbjct: 1708 SVLLNAEVHAAAALELAGDLASPLLLVLCLLNMAELHWLQGRPAPAYQAWKEAQALLNMTFLQRQDAKEYAAMHTVPRKMRAGAAGAAPLTGTLNVSARGXXXXXXSSPNRLPHAPTQTASPPKKSTWPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGMPSLPTVLHSPSTLVRVYGLLSRVVRMSFMMAGTPPVPSLLPSH--SFPVVLASALPNHTHLLAGWQYLDSEVRQYQGLTK 1958
BLAST of mRNA_H-paniculata_contig4193.10759.1 vs. uniprot
Match: A0A6U4EDT2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EDT2_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.710e-15 Identity = 80/262 (30.53%), Postives = 116/262 (44.27%), Query Frame = 1
Query: 328 KDSRYGGAADEAFNLAFEYFRTADDVYHQQAKSMARGVEMQLSRVFAEVALRQVPLKDVAMGQGPSVVRGLEPRAARSLGLAGDAGEPLLLALALLNAAEVSWLLGRQVSSYQAWKEAAGLLSLVHLQRQEVAPAGPGSIGGGMDNEATDHGRTPGPGTAADGRPVLIMDMTGGINGSKRSHRTAGTPLRAPAFPTVAFPPSMMLKVHGLLQRATRLSFVLSGPPPAHAVATAQVLSNPLVAAALPNSTHLLAGWALLDGWV 1113
K R A AF A + +D+ H+ K +R E+ L R+F VA+R L +V G+G +++ E A +L G+ G P+ + + L+N AEV L R +Y+AW+EA L+ V+LQR+ TD GR AA G P R TPL +PTV +PP M+L++H L R RL F+L PP + A+ L ++ LL W +DG V
Sbjct: 664 KQERTAERAISAFKEALVKYAQTNDLRHK-VKCRSRMAEVYLRRLFTTVAIRGDKLGEVLEGRGEEILQLAEREAVLALESVGEIGCPMTILMCLMNIAEVHHLRERPKLAYRAWREALTLMGHVYLQRRTK----------------TDDGR------AARGGPATF--------------RPPRTPLSDTLYPTVLYPPGMLLRLHSHLSRIVRLGFLLK--PPGNTQASL-----------LQHNLPLLTSWKHMDGLV 875 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4193.10759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4193.10759.1 >prot_H-paniculata_contig4193.10759.1 ID=prot_H-paniculata_contig4193.10759.1|Name=mRNA_H-paniculata_contig4193.10759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=754bp MVAMVKNVDFLVLRTRCSLAAGDPTSALQWVGIALAVSTDSRQLGNEGRLback to top mRNA from alignment at H-paniculata_contig4193:753..11389+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4193.10759.1 ID=mRNA_H-paniculata_contig4193.10759.1|Name=mRNA_H-paniculata_contig4193.10759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10637bp|location=Sequence derived from alignment at H-paniculata_contig4193:753..11389+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4193:753..11389+ >mRNA_H-paniculata_contig4193.10759.1 ID=mRNA_H-paniculata_contig4193.10759.1|Name=mRNA_H-paniculata_contig4193.10759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4524bp|location=Sequence derived from alignment at H-paniculata_contig4193:753..11389+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |