mRNA_H-paniculata_contig4185.10747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4185.10747.1
Unique NamemRNA_H-paniculata_contig4185.10747.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4185.10747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4185contigH-paniculata_contig4185:5301..6298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000640.1
Exons2
Model size397
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930274.249311-CDS-H-paniculata_contig4185:5300..53921622930274.249311-CDS-H-paniculata_contig4185:5300..5392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4185 5301..5392 +
1691481220.399573-CDS-H-paniculata_contig4185:5300..53921691481220.399573-CDS-H-paniculata_contig4185:5300..5392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4185 5301..5392 +
1622930274.2624905-CDS-H-paniculata_contig4185:5994..62981622930274.2624905-CDS-H-paniculata_contig4185:5994..6298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4185 5995..6298 +
1691481220.4209812-CDS-H-paniculata_contig4185:5994..62981691481220.4209812-CDS-H-paniculata_contig4185:5994..6298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4185 5995..6298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4185.10747.1prot_H-paniculata_contig4185.10747.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4185 5301..6298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4185.10747.1

>prot_H-paniculata_contig4185.10747.1 ID=prot_H-paniculata_contig4185.10747.1|Name=mRNA_H-paniculata_contig4185.10747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
GERREEGGVSVATSSSTLPPLEEELAELLERHRRLDKEAEKLTRHAEADA
SQWDFETTMSWSPSRRVADSVSSSSPRRDDSDSDRRFPSAEPPAAAVTTA
APNGQQRGSKYSSVRSALDALPEELGLGERMG
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mRNA from alignment at H-paniculata_contig4185:5301..6298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4185.10747.1 ID=mRNA_H-paniculata_contig4185.10747.1|Name=mRNA_H-paniculata_contig4185.10747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=998bp|location=Sequence derived from alignment at H-paniculata_contig4185:5301..6298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGAGAAGGGAGGAGGGAGGAGTTTCGGTTGCGACGAGCAGCTCGAC
GCTGCCGCCACTGGAAGAAGAGCTCGCGGAGCTGCTGGAAAGGTGCGAAG
AAAATATATGTGTGTGTGTTGTTCTTTTGCTTGTGTCGATTAATTTCTGA
ACTCATTGCGGTTTCATGTTCTCAAAAAAATTAATTGAAGGAACGAGAAG
AATACGTTTCTGAGACGCGAACTTCGTGAATACATGGATTGATGAACTGG
AGCGGTCGTCATTTGTTGCGAGGGGCCATTGGTACTGTTCGGTTTTTGGA
ATATCCGTCTACAAGAAACTTTTATTACCATGGTTTCAATGCTACCTTGA
GATCGCGATGATTCTTCGATCATCTGTTTTATACCCCCCGTTTTTTCAAG
TTTTTCACTGATGTAGATTCTGACTCTTCACCCCTTTCCGCTCCTCCGTA
CCCCCCTCTTTCTTAAAAAATCGGCCGTGAGCCGGGTGTATCCTGTGTCA
TGTTATTGTCTACATATCGACCTTTGCTCGGTTACCCGGCACACCAAAGT
GTATCACCCCCCTCCCCTCCTCCACTTGACAATTTAATTTTACTGAAAGT
TTACATAGCTGAGATTCGAGGTCAGCTGTATAATCTCGACACGGGTACAA
CGTATACCCCCCCCCCCCTCGCCGCCGCCGCCGAATCTCTGTAGACATCG
ACGCCTTGACAAAGAAGCCGAGAAGCTGACTCGCCACGCCGAGGCAGACG
CTTCCCAATGGGACTTCGAAACAACCATGTCCTGGTCTCCAAGCAGGCGG
GTGGCCGACAGCGTAAGCTCATCATCCCCGCGGCGGGACGATAGCGATAG
TGACAGGCGATTTCCATCAGCAGAACCTCCAGCGGCGGCAGTGACGACGG
CCGCGCCTAATGGGCAACAGCGCGGGAGCAAGTACTCGAGCGTCCGAAGC
GCTCTAGACGCGCTGCCGGAGGAGCTGGGGTTAGGGGAAAGGATGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig4185:5301..6298+

>mRNA_H-paniculata_contig4185.10747.1 ID=mRNA_H-paniculata_contig4185.10747.1|Name=mRNA_H-paniculata_contig4185.10747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig4185:5301..6298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGAGAAGGGAGGAGGGAGGAGTTTCGGTTGCGACGAGCAGCTCGAC
GCTGCCGCCACTGGAAGAAGAGCTCGCGGAGCTGCTGGAAAGGGGGAGAG
AAGGGAGGAGGGAGGAGTTTCGGTTGCGACGAGCAGCTCGACGCTGCCGC
CACTGGAAGAAGAGCTCGCGGAGCTGCTGGAAAGACATCGACGCCTTGAC
AAAGAAGCCGAGAAGCTGACTCGCCACGCCGAGGCAGACGCTTCCCAATG
GGACTTCGAAACAACCATGTCCTGGTCTCCAAGCAGGCGGGTGGCCGACA
GCGTAAGCTCATCATCCCCGCGGCGGGACGATAGCGATAGTGACAGGCGA
TTTCCATCAGCAGAACCTCCAGCGGCGGCAGTGACGACGGCCGCGCCTAA
TGGGCAACAGCGCGGGAGCAAGTACTCGAGCGTCCGAAGCGCTCTAGACG
CGCTGCCGGAGGAGCTGGGGTTAGGGGAAAGGATGGGTACATCGACGCCT
TGACAAAGAAGCCGAGAAGCTGACTCGCCACGCCGAGGCAGACGCTTCCC
AATGGGACTTCGAAACAACCATGTCCTGGTCTCCAAGCAGGCGGGTGGCC
GACAGCGTAAGCTCATCATCCCCGCGGCGGGACGATAGCGATAGTGACAG
GCGATTTCCATCAGCAGAACCTCCAGCGGCGGCAGTGACGACGGCCGCGC
CTAATGGGCAACAGCGCGGGAGCAAGTACTCGAGCGTCCGAAGCGCTCTA
GACGCGCTGCCGGAGGAGCTGGGGTTAGGGGAAAGGATGGGT
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