mRNA_H-paniculata_contig1167.1070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1167.1070.1
Unique NamemRNA_H-paniculata_contig1167.1070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1167.1070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1167contigH-paniculata_contig1167:783..3309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2187
Cds size2169
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1167.1070.1prot_H-paniculata_contig1167.1070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1167 800..3309 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928875.3589835-UTR-H-paniculata_contig1167:782..7991622928875.3589835-UTR-H-paniculata_contig1167:782..799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1167 783..799 +
1691480653.0603378-UTR-H-paniculata_contig1167:782..7991691480653.0603378-UTR-H-paniculata_contig1167:782..799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1167 783..799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928875.3796403-CDS-H-paniculata_contig1167:799..17321622928875.3796403-CDS-H-paniculata_contig1167:799..1732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1167 800..1732 +
1691480653.0702424-CDS-H-paniculata_contig1167:799..17321691480653.0702424-CDS-H-paniculata_contig1167:799..1732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1167 800..1732 +
1622928875.3947-CDS-H-paniculata_contig1167:2073..33091622928875.3947-CDS-H-paniculata_contig1167:2073..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1167 2074..3309 +
1691480653.0796137-CDS-H-paniculata_contig1167:2073..33091691480653.0796137-CDS-H-paniculata_contig1167:2073..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1167 2074..3309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1167.1070.1

>prot_H-paniculata_contig1167.1070.1 ID=prot_H-paniculata_contig1167.1070.1|Name=mRNA_H-paniculata_contig1167.1070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=723bp
MGGRGYTVKSNGNGVRLDTSGGVPMMTATATGSRPLTWFSDRTTKALVLI
TTTTNRKSTTDKNNCSRSRSVEQGLGEGETAGRDNSTRIAGLMASGVDAG
GFGCVHGVTICGGSNRDDCGDRCCADLPWVGSVKVLDAPATMVSGDPPDT
GEGSDRRRVMWLGANNNRCNIGDNDRVANYPSDDHRKGEISAPAAFPCTT
CISSSTSSGSRGKRRRRPWEEVRNKLNKPSVADAHVTGQPSREGRREDYS
SDIAKMPAPQAPSPRTSLGGTTRTREGGGVPCDGPGIGSVEGRDWVRKGD
EHGDSRKAAVPEPTLALLRRFAVCTEVIVLRGTTAHHTNKLPVNHSPSST
ASHSSSKGQKAATPAATSSESRSDSEKSTTESERHSYPGDEKVLSPGFAE
ARVLEGGVTVLFRHFIVVDEVDMGVLNPQDESTPPGLSGMTMDPSIRRHP
IDDSSVNMGDPKGRDPSVAEITRESFSIPRSPLASAPTRHPPHFVIDSTS
GSQPVGDSFSYTGGSFIGGNPSIANNVPAAEGNTSAVSNRKGQPRQPQYQ
PQQKHRHQEQQEQTSARSVSMALLTVREAMVVKLAAVSHHRAHSTFKNPG
TGAGDTTPSRNFSGPKIHPKHERESISVVGLLAEVGFRVQGGSGDAGVAG
SRRKSSPSSKAPPSSTISRPAAAAYTSTDKSRYGDQAIAAKSAVDYPGRF
GGCSARVGFGNGGVLLSDATSDP
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mRNA from alignment at H-paniculata_contig1167:783..3309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1167.1070.1 ID=mRNA_H-paniculata_contig1167.1070.1|Name=mRNA_H-paniculata_contig1167.1070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2527bp|location=Sequence derived from alignment at H-paniculata_contig1167:783..3309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGTAAGGCGCATGGCATGGGTGGAAGGGGATATACTGTTAAAAGTAAT
GGTAATGGAGTGAGGTTGGATACCTCAGGAGGCGTGCCGATGATGACTGC
AACGGCGACGGGGAGCAGGCCCTTGACGTGGTTCAGTGATCGGACCACGA
AAGCGCTTGTGTTGATTACGACGACAACAAATAGGAAATCGACCACGGAT
AAGAACAACTGTTCTCGCTCGCGTTCTGTGGAGCAGGGGTTGGGGGAGGG
GGAAACAGCAGGCCGAGACAACAGTACGCGAATTGCGGGACTGATGGCTA
GTGGTGTTGATGCTGGTGGTTTTGGTTGCGTTCATGGTGTCACTATTTGT
GGAGGTAGTAATCGCGATGATTGTGGTGACCGTTGCTGTGCCGATCTCCC
TTGGGTGGGAAGCGTGAAGGTCTTAGATGCACCTGCGACCATGGTTTCTG
GAGATCCTCCTGACACTGGCGAAGGCAGCGATCGGAGAAGAGTCATGTGG
TTGGGGGCTAACAACAACCGTTGTAATATCGGGGACAATGATAGGGTCGC
GAATTACCCCAGCGACGACCACAGAAAAGGAGAAATCAGCGCGCCCGCTG
CTTTTCCCTGCACCACTTGCATTAGCAGTAGTACTAGTTCCGGCAGCAGA
GGGAAGCGCAGACGGCGTCCATGGGAAGAAGTCCGCAACAAGCTGAACAA
ACCAAGCGTTGCCGATGCTCATGTCACCGGCCAGCCTTCGAGAGAGGGAC
GAAGGGAGGATTATTCTAGTGATATCGCCAAGATGCCGGCACCGCAAGCT
CCCTCTCCTAGGACGTCGCTCGGTGGGACAACGCGGACTCGAGAAGGTGG
TGGTGTACCTTGTGACGGCCCGGGAATAGGATCGGTGGAGGGGCGGGACT
GGGTGCGTAAGGGTGATGAACATGGTGACTCGCGGAAGGCTGCTGTGCCG
GTGAGTGGATGAGTAAGGATGAAAACGACGTTCTTGTTGATGTAGGTTGA
GTTATTGGTGCAAGGCGTGGGCCGTTTTTGGATCGTATTGGCATACTTTA
CCTAGCTGATTTTTAATGTGCAGGTGGCGTGCGCATAACACCCGGTTTTC
GTTAACCACGGTAAGTAATTCCAGAATTTGGGATCGACTCTCATTTTTCA
TCTCGATAATATCATTGGTTGGCCTCGATAACCTCACACACTGACAAAAT
CCCCCCCTTCACCCCCCCTCCCGGGCGAATTCTGCGTATAAATGCGGTTA
TTCCTTGAACTCGCTTTGGACAACAAATGCTCTGTTATCAGGAGCCGACC
CTGGCGCTATTGCGAAGGTTCGCGGTTTGCACCGAGGTTATCGTATTGAG
GGGGACGACGGCGCATCATACAAACAAGCTGCCGGTAAACCACTCGCCGA
GTTCGACCGCTTCACATTCGTCGAGCAAAGGGCAAAAGGCAGCAACACCA
GCAGCAACATCGTCAGAGTCGCGGTCGGACTCTGAGAAGTCTACAACGGA
AAGCGAGAGGCATTCTTACCCAGGGGATGAGAAGGTGTTATCCCCGGGTT
TCGCCGAAGCACGGGTGTTAGAGGGCGGGGTGACCGTTTTATTTCGCCAT
TTTATCGTTGTGGACGAGGTGGACATGGGTGTTTTGAACCCCCAAGATGA
AAGTACCCCGCCAGGGTTATCGGGGATGACAATGGATCCTTCTATTCGGC
GGCACCCAATCGATGATTCATCCGTTAACATGGGAGATCCAAAAGGACGA
GATCCTTCGGTCGCGGAGATAACGAGGGAATCGTTTTCCATTCCACGCTC
ACCCCTCGCGAGTGCGCCAACCAGACACCCACCACATTTCGTCATAGATT
CGACGTCTGGAAGTCAGCCAGTCGGAGATTCTTTTTCGTATACCGGAGGT
TCATTCATTGGAGGTAATCCATCAATCGCTAATAACGTGCCAGCAGCAGA
AGGAAACACGTCAGCAGTTAGCAACCGAAAAGGGCAGCCACGGCAACCTC
AATATCAGCCACAGCAAAAACATCGTCATCAAGAACAACAAGAACAAACT
TCTGCAAGAAGTGTTTCCATGGCACTTCTCACCGTCAGGGAGGCGATGGT
CGTGAAGCTGGCCGCGGTCTCGCATCACCGCGCTCACTCCACTTTCAAGA
ACCCGGGTACCGGTGCTGGCGACACAACACCAAGCAGAAACTTCTCGGGG
CCTAAGATCCACCCAAAGCACGAGCGGGAATCCATCAGTGTGGTGGGTCT
CCTAGCAGAGGTAGGCTTTCGGGTACAGGGAGGTTCAGGAGATGCGGGGG
TAGCAGGCTCACGCCGAAAATCAAGCCCTTCTTCGAAAGCGCCGCCATCC
TCTACGATTTCAAGACCTGCTGCTGCGGCTTATACTAGCACAGACAAAAG
CAGGTATGGCGATCAGGCTATCGCTGCTAAGAGTGCAGTCGATTATCCTG
GCAGGTTCGGGGGGTGTTCCGCCAGAGTTGGCTTTGGGAATGGTGGAGTA
TTGCTGTCAGATGCGACGAGCGATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1167:783..3309+

>mRNA_H-paniculata_contig1167.1070.1 ID=mRNA_H-paniculata_contig1167.1070.1|Name=mRNA_H-paniculata_contig1167.1070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4338bp|location=Sequence derived from alignment at H-paniculata_contig1167:783..3309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGGAAGGGGATATACTGTTAAAAGTAATGGTAATGGAGTGAGGTT
GGATACCTCAGGAGGCGTGCCGATGATGACTGCAACGGCGACGGGGAGCA
GGCCCTTGACGTGGTTCAGTGATCGGACCACGAAAGCGCTTGTGTTGATT
ACGACGACAACAAATAGGAAATCGACCACGGATAAGAACAACTGTTCTCG
CTCGCGTTCTGTGGAGCAGGGGTTGGGGGAGGGGGAAACAGCAGGCCGAG
ACAACAGTACGCGAATTGCGGGACTGATGGCTAGTGGTGTTGATGCTGGT
GGTTTTGGTTGCGTTCATGGTGTCACTATTTGTGGAGGTAGTAATCGCGA
TGATTGTGGTGACCGTTGCTGTGCCGATCTCCCTTGGGTGGGAAGCGTGA
AGGTCTTAGATGCACCTGCGACCATGGTTTCTGGAGATCCTCCTGACACT
GGCGAAGGCAGCGATCGGAGAAGAGTCATGTGGTTGGGGGCTAACAACAA
CCGTTGTAATATCGGGGACAATGATAGGGTCGCGAATTACCCCAGCGACG
ACCACAGAAAAGGAGAAATCAGCGCGCCCGCTGCTTTTCCCTGCACCACT
TGCATTAGCAGTAGTACTAGTTCCGGCAGCAGAGGGAAGCGCAGACGGCG
TCCATGGGAAGAAGTCCGCAACAAGCTGAACAAACCAAGCGTTGCCGATG
CTCATGTCACCGGCCAGCCTTCGAGAGAGGGACGAAGGGAGGATTATTCT
AGTGATATCGCCAAGATGCCGGCACCGCAAGCTCCCTCTCCTAGGACGTC
GCTCGGTGGGACAACGCGGACTCGAGAAGGTGGTGGTGTACCTTGTGACG
GCCCGGGAATAGGATCGGTGGAGGGGCGGGACTGGGTGCGTAAGGGTGAT
GAACATGGTGACTCGCGGAAGGCTGCTGTGCCGATGGGTGGAAGGGGATA
TACTGTTAAAAGTAATGGTAATGGAGTGAGGTTGGATACCTCAGGAGGCG
TGCCGATGATGACTGCAACGGCGACGGGGAGCAGGCCCTTGACGTGGTTC
AGTGATCGGACCACGAAAGCGCTTGTGTTGATTACGACGACAACAAATAG
GAAATCGACCACGGATAAGAACAACTGTTCTCGCTCGCGTTCTGTGGAGC
AGGGGTTGGGGGAGGGGGAAACAGCAGGCCGAGACAACAGTACGCGAATT
GCGGGACTGATGGCTAGTGGTGTTGATGCTGGTGGTTTTGGTTGCGTTCA
TGGTGTCACTATTTGTGGAGGTAGTAATCGCGATGATTGTGGTGACCGTT
GCTGTGCCGATCTCCCTTGGGTGGGAAGCGTGAAGGTCTTAGATGCACCT
GCGACCATGGTTTCTGGAGATCCTCCTGACACTGGCGAAGGCAGCGATCG
GAGAAGAGTCATGTGGTTGGGGGCTAACAACAACCGTTGTAATATCGGGG
ACAATGATAGGGTCGCGAATTACCCCAGCGACGACCACAGAAAAGGAGAA
ATCAGCGCGCCCGCTGCTTTTCCCTGCACCACTTGCATTAGCAGTAGTAC
TAGTTCCGGCAGCAGAGGGAAGCGCAGACGGCGTCCATGGGAAGAAGTCC
GCAACAAGCTGAACAAACCAAGCGTTGCCGATGCTCATGTCACCGGCCAG
CCTTCGAGAGAGGGACGAAGGGAGGATTATTCTAGTGATATCGCCAAGAT
GCCGGCACCGCAAGCTCCCTCTCCTAGGACGTCGCTCGGTGGGACAACGC
GGACTCGAGAAGGTGGTGGTGTACCTTGTGACGGCCCGGGAATAGGATCG
GTGGAGGGGCGGGACTGGGTGCGTAAGGGTGATGAACATGGTGACTCGCG
GAAGGCTGCTGTGCCGGAGCCGACCCTGGCGCTATTGCGAAGGTTCGCGG
TTTGCACCGAGGTTATCGTATTGAGGGGGACGACGGCGCATCATACAAAC
AAGCTGCCGGTAAACCACTCGCCGAGTTCGACCGCTTCACATTCGTCGAG
CAAAGGGCAAAAGGCAGCAACACCAGCAGCAACATCGTCAGAGTCGCGGT
CGGACTCTGAGAAGTCTACAACGGAAAGCGAGAGGCATTCTTACCCAGGG
GATGAGAAGGTGTTATCCCCGGGTTTCGCCGAAGCACGGGTGTTAGAGGG
CGGGGTGACCGTTTTATTTCGCCATTTTATCGTTGTGGACGAGGTGGACA
TGGGTGTTTTGAACCCCCAAGATGAAAGTACCCCGCCAGGGTTATCGGGG
ATGACAATGGATCCTTCTATTCGGCGGCACCCAATCGATGATTCATCCGT
TAACATGGGAGATCCAAAAGGACGAGATCCTTCGGTCGCGGAGATAACGA
GGGAATCGTTTTCCATTCCACGCTCACCCCTCGCGAGTGCGCCAACCAGA
CACCCACCACATTTCGTCATAGATTCGACGTCTGGAAGTCAGCCAGTCGG
AGATTCTTTTTCGTATACCGGAGGTTCATTCATTGGAGGTAATCCATCAA
TCGCTAATAACGTGCCAGCAGCAGAAGGAAACACGTCAGCAGTTAGCAAC
CGAAAAGGGCAGCCACGGCAACCTCAATATCAGCCACAGCAAAAACATCG
TCATCAAGAACAACAAGAACAAACTTCTGCAAGAAGTGTTTCCATGGCAC
TTCTCACCGTCAGGGAGGCGATGGTCGTGAAGCTGGCCGCGGTCTCGCAT
CACCGCGCTCACTCCACTTTCAAGAACCCGGGTACCGGTGCTGGCGACAC
AACACCAAGCAGAAACTTCTCGGGGCCTAAGATCCACCCAAAGCACGAGC
GGGAATCCATCAGTGTGGTGGGTCTCCTAGCAGAGGTAGGCTTTCGGGTA
CAGGGAGGTTCAGGAGATGCGGGGGTAGCAGGCTCACGCCGAAAATCAAG
CCCTTCTTCGAAAGCGCCGCCATCCTCTACGATTTCAAGACCTGCTGCTG
CGGCTTATACTAGCACAGACAAAAGCAGGTATGGCGATCAGGCTATCGCT
GCTAAGAGTGCAGTCGATTATCCTGGCAGGTTCGGGGGGTGTTCCGCCAG
AGTTGGCTTTGGGAATGGTGGAGTATTGCTGTCAGATGCGACGAGCGATC
CCGAGCCGACCCTGGCGCTATTGCGAAGGTTCGCGGTTTGCACCGAGGTT
ATCGTATTGAGGGGGACGACGGCGCATCATACAAACAAGCTGCCGGTAAA
CCACTCGCCGAGTTCGACCGCTTCACATTCGTCGAGCAAAGGGCAAAAGG
CAGCAACACCAGCAGCAACATCGTCAGAGTCGCGGTCGGACTCTGAGAAG
TCTACAACGGAAAGCGAGAGGCATTCTTACCCAGGGGATGAGAAGGTGTT
ATCCCCGGGTTTCGCCGAAGCACGGGTGTTAGAGGGCGGGGTGACCGTTT
TATTTCGCCATTTTATCGTTGTGGACGAGGTGGACATGGGTGTTTTGAAC
CCCCAAGATGAAAGTACCCCGCCAGGGTTATCGGGGATGACAATGGATCC
TTCTATTCGGCGGCACCCAATCGATGATTCATCCGTTAACATGGGAGATC
CAAAAGGACGAGATCCTTCGGTCGCGGAGATAACGAGGGAATCGTTTTCC
ATTCCACGCTCACCCCTCGCGAGTGCGCCAACCAGACACCCACCACATTT
CGTCATAGATTCGACGTCTGGAAGTCAGCCAGTCGGAGATTCTTTTTCGT
ATACCGGAGGTTCATTCATTGGAGGTAATCCATCAATCGCTAATAACGTG
CCAGCAGCAGAAGGAAACACGTCAGCAGTTAGCAACCGAAAAGGGCAGCC
ACGGCAACCTCAATATCAGCCACAGCAAAAACATCGTCATCAAGAACAAC
AAGAACAAACTTCTGCAAGAAGTGTTTCCATGGCACTTCTCACCGTCAGG
GAGGCGATGGTCGTGAAGCTGGCCGCGGTCTCGCATCACCGCGCTCACTC
CACTTTCAAGAACCCGGGTACCGGTGCTGGCGACACAACACCAAGCAGAA
ACTTCTCGGGGCCTAAGATCCACCCAAAGCACGAGCGGGAATCCATCAGT
GTGGTGGGTCTCCTAGCAGAGGTAGGCTTTCGGGTACAGGGAGGTTCAGG
AGATGCGGGGGTAGCAGGCTCACGCCGAAAATCAAGCCCTTCTTCGAAAG
CGCCGCCATCCTCTACGATTTCAAGACCTGCTGCTGCGGCTTATACTAGC
ACAGACAAAAGCAGGTATGGCGATCAGGCTATCGCTGCTAAGAGTGCAGT
CGATTATCCTGGCAGGTTCGGGGGGTGTTCCGCCAGAGTTGGCTTTGGGA
ATGGTGGAGTATTGCTGTCAGATGCGACGAGCGATCCC
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