mRNA_H-paniculata_contig41372.10638.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41372.10638.1
Unique NamemRNA_H-paniculata_contig41372.10638.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41372.10638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41372contigH-paniculata_contig41372:32..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size909
Cds size906
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930261.64648-CDS-H-paniculata_contig41372:32..7731622930261.64648-CDS-H-paniculata_contig41372:32..773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41372 33..773 -
1691481215.1280408-CDS-H-paniculata_contig41372:32..7731691481215.1280408-CDS-H-paniculata_contig41372:32..773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41372 33..773 -
1622930261.6772223-CDS-H-paniculata_contig41372:1370..15351622930261.6772223-CDS-H-paniculata_contig41372:1370..1535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41372 1371..1535 -
1691481215.1392567-CDS-H-paniculata_contig41372:1370..15351691481215.1392567-CDS-H-paniculata_contig41372:1370..1535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41372 1371..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41372.10638.1prot_H-paniculata_contig41372.10638.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41372 33..1535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41372.10638.1

>prot_H-paniculata_contig41372.10638.1 ID=prot_H-paniculata_contig41372.10638.1|Name=mRNA_H-paniculata_contig41372.10638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp
FDDPTSVRFFGHFFVGGRMCHASEFSGRRSANEGTTAPRIPAPCWSDEED
DMEVQTSSGATIRLGGDTMKLGTYPDSPLSAARSARVPVRSTTLPPQAPH
ANEPTRSSLPPSAKRPPPSPTSGSGSDGTDRLSAGISTVPTPRGALGEDR
GMQATSPVEAIPERTAASPPRRPSSPNSSKASRASFDSNDDSGDDDMSMT
LAVGLAPAAAVVPARPAVTAPAARIATTTIGDAAPRTKTGQLKSKKIARV
TSKPDPTSSKSSSVTSKPGPTTSKPSPATSKPGPTTSYSRSISGSRQLSP
PT
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mRNA from alignment at H-paniculata_contig41372:32..1535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41372.10638.1 ID=mRNA_H-paniculata_contig41372.10638.1|Name=mRNA_H-paniculata_contig41372.10638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1504bp|location=Sequence derived from alignment at H-paniculata_contig41372:32..1535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGATGACCCAACGAGTGTGAGATTCTTTGGGCATTTTTTTGTTGGGGG
AAGAATGTGTCATGCGTCAGAATTTTCTGGAAGGCGATCAGCTAACGAGG
GCACAACTGCACCGCGCATACCAGCTCCTTGTTGGTCAGACGAAGAAGAT
GACATGGAGGTACAGGTGAGCGGGTGTGTCTGCGGGCTGTAAAGTGTGTG
CAGATCGTGCAGTAAATGGTTTTTACTACCGTCCTTGGAAAAATGATATT
CTGGTGGCGTTTCGGAGCTTTTTATTGCAGGAAAAATAATGTCTCATTTA
TCACGATTGAAACGCCAATAGTTGGGAGATCCTCAACTGTTTACCAGTGA
TTCATGTCTGCTGGGAATTTTGCAGCACGCCGAATACCTGTTGCACCGTT
TCTGCATCTTTTTCCGGCGGGCTTTTTCAATTTTATCATCATTTCAAAAA
AACGAGAAAATCTTTGTTGCACTTCCTGTACCATACGCGAGCAACAGTTT
TCAATTTCCCAATTACTATAGCGTGATTTTTCAATATTCAATCAGGCCGG
AGAAGCAACGCTTCTGTTCTGTGTCCAGTACTGTCGTATGCGAAATATCA
CCGAGTTTCCTCACCAACGTCGCCTTTCCCTCCAACGGAAACCTTCGCCG
AAAGCTTCAAAAACCGATGCGATAATTCGCATAATCCCTCCCTTTGTAAC
GTCCAATATTTACCCCTCTTTCGTCCTATTCCTCCTTCCGCAACCTACGC
GGAACCAACCAGACGTCTAGCGGAGCAACAATACGGCTGGGAGGAGACAC
CATGAAGCTGGGAACATACCCGGATAGTCCACTGTCGGCGGCCCGGTCCG
CCCGTGTACCCGTCCGGTCGACAACTCTGCCTCCCCAAGCGCCACACGCC
AATGAACCTACACGCTCCTCGCTTCCGCCATCCGCTAAGAGGCCCCCGCC
CTCTCCCACAAGTGGCTCCGGTTCCGACGGTACGGACCGTCTGTCGGCGG
GAATTAGTACTGTACCCACACCGCGCGGGGCGCTCGGCGAGGATCGCGGG
ATGCAAGCCACCTCCCCCGTTGAGGCAATCCCAGAGCGAACCGCAGCAAG
TCCCCCCCGCCGTCCTTCGAGTCCGAATAGCAGCAAAGCTTCCCGTGCGT
CCTTCGACTCCAATGACGACTCGGGAGATGACGACATGAGCATGACGCTA
GCCGTAGGCTTAGCGCCGGCGGCGGCGGTCGTACCTGCCCGTCCTGCGGT
CACCGCTCCTGCTGCTAGGATTGCTACCACCACCATCGGAGACGCTGCTC
CCCGGACGAAAACCGGTCAGTTGAAATCCAAAAAAATCGCTCGGGTCACA
TCGAAACCCGATCCAACATCATCGAAATCCAGCTCGGTCACATCCAAACC
CGGCCCGACCACATCCAAACCCAGCCCAGCCACATCCAAACCTGGCCCTA
CCACATCCTATTCCCGTTCGATATCGGGATCCAGGCAGCTCTCGCCGCCG
ACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig41372:32..1535-

>mRNA_H-paniculata_contig41372.10638.1 ID=mRNA_H-paniculata_contig41372.10638.1|Name=mRNA_H-paniculata_contig41372.10638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig41372:32..1535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGATGACCCAACGAGTGTGAGATTCTTTGGGCATTTTTTTGTTGGGGG
AAGAATGTGTCATGCGTCAGAATTTTCTGGAAGGCGATCAGCTAACGAGG
GCACAACTGCACCGCGCATACCAGCTCCTTGTTGGTCAGACGAAGAAGAT
GACATGGAGGTACAGTTTGATGACCCAACGAGTGTGAGATTCTTTGGGCA
TTTTTTTGTTGGGGGAAGAATGTGTCATGCGTCAGAATTTTCTGGAAGGC
GATCAGCTAACGAGGGCACAACTGCACCGCGCATACCAGCTCCTTGTTGG
TCAGACGAAGAAGATGACATGGAGGTACAGACGTCTAGCGGAGCAACAAT
ACGGCTGGGAGGAGACACCATGAAGCTGGGAACATACCCGGATAGTCCAC
TGTCGGCGGCCCGGTCCGCCCGTGTACCCGTCCGGTCGACAACTCTGCCT
CCCCAAGCGCCACACGCCAATGAACCTACACGCTCCTCGCTTCCGCCATC
CGCTAAGAGGCCCCCGCCCTCTCCCACAAGTGGCTCCGGTTCCGACGGTA
CGGACCGTCTGTCGGCGGGAATTAGTACTGTACCCACACCGCGCGGGGCG
CTCGGCGAGGATCGCGGGATGCAAGCCACCTCCCCCGTTGAGGCAATCCC
AGAGCGAACCGCAGCAAGTCCCCCCCGCCGTCCTTCGAGTCCGAATAGCA
GCAAAGCTTCCCGTGCGTCCTTCGACTCCAATGACGACTCGGGAGATGAC
GACATGAGCATGACGCTAGCCGTAGGCTTAGCGCCGGCGGCGGCGGTCGT
ACCTGCCCGTCCTGCGGTCACCGCTCCTGCTGCTAGGATTGCTACCACCA
CCATCGGAGACGCTGCTCCCCGGACGAAAACCGGTCAGTTGAAATCCAAA
AAAATCGCTCGGGTCACATCGAAACCCGATCCAACATCATCGAAATCCAG
CTCGGTCACATCCAAACCCGGCCCGACCACATCCAAACCCAGCCCAGCCA
CATCCAAACCTGGCCCTACCACATCCTATTCCCGTTCGATATCGGGATCC
AGGCAGCTCTCGCCGCCGACAACGTCTAGCGGAGCAACAATACGGCTGGG
AGGAGACACCATGAAGCTGGGAACATACCCGGATAGTCCACTGTCGGCGG
CCCGGTCCGCCCGTGTACCCGTCCGGTCGACAACTCTGCCTCCCCAAGCG
CCACACGCCAATGAACCTACACGCTCCTCGCTTCCGCCATCCGCTAAGAG
GCCCCCGCCCTCTCCCACAAGTGGCTCCGGTTCCGACGGTACGGACCGTC
TGTCGGCGGGAATTAGTACTGTACCCACACCGCGCGGGGCGCTCGGCGAG
GATCGCGGGATGCAAGCCACCTCCCCCGTTGAGGCAATCCCAGAGCGAAC
CGCAGCAAGTCCCCCCCGCCGTCCTTCGAGTCCGAATAGCAGCAAAGCTT
CCCGTGCGTCCTTCGACTCCAATGACGACTCGGGAGATGACGACATGAGC
ATGACGCTAGCCGTAGGCTTAGCGCCGGCGGCGGCGGTCGTACCTGCCCG
TCCTGCGGTCACCGCTCCTGCTGCTAGGATTGCTACCACCACCATCGGAG
ACGCTGCTCCCCGGACGAAAACCGGTCAGTTGAAATCCAAAAAAATCGCT
CGGGTCACATCGAAACCCGATCCAACATCATCGAAATCCAGCTCGGTCAC
ATCCAAACCCGGCCCGACCACATCCAAACCCAGCCCAGCCACATCCAAAC
CTGGCCCTACCACATCCTATTCCCGTTCGATATCGGGATCCAGGCAGCTC
TCGCCGCCGACA
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