mRNA_H-paniculata_contig41337.10633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41337.10633.1
Unique NamemRNA_H-paniculata_contig41337.10633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: D7G294_ECTSI (18S rRNA aminocarboxypropyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G294_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.250e-43
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQ 249
            +MRRGHHRLLPFLVAANPVNYGKP KL+CAEAIAATLYIVGH+D+AV+VM+QFGWGAEFLR+N +VL+TYAAC DGAEVVKAQ
Sbjct:  155 QMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQ 237
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: A0A835YJ70_9STRA (18S rRNA aminocarboxypropyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ70_9STRA)

HSP 1 Score: 130 bits (326), Expect = 8.030e-35
Identity = 61/83 (73.49%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQ 249
            +MRRGHHRLLPFLVAANPVNYGKP+KL+CAEA+AATL IVG  ++   VM+QFGWG EFL+INA+VL  YAAC  GAEV+ AQ
Sbjct:  154 QMRRGHHRLLPFLVAANPVNYGKPFKLTCAEALAATLVIVGLREQGALVMDQFGWGPEFLKINADVLDRYAACSSGAEVITAQ 236
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: A0A3M6VVZ0_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVZ0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.380e-33
Identity = 59/83 (71.08%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQ 249
            ++R G HRLLPFLVAAN VNYG+P+KLSCAEAIAATLYIVG +D+A++VM++F WGAEFL+INA+ L+ YAAC + AEVV+AQ
Sbjct:  122 QLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLQDEAIQVMDEFSWGAEFLKINADCLQAYAACTNSAEVVEAQ 204
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: G4ZJA7_PHYSP (18S rRNA aminocarboxypropyltransferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJA7_PHYSP)

HSP 1 Score: 125 bits (313), Expect = 9.790e-33
Identity = 59/83 (71.08%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQ 249
            ++R G HRLLPFLVAAN VNYG+P+KLSCAEAIAATLYIVG +D+AV++M++F WGAEFL+INA+ L+ YAAC D A+VV AQ
Sbjct:  122 QLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACEDSAQVVAAQ 204
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: A0A7R9UC21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC21_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.100e-32
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQ 249
            ++R GHHRLLPFLVAANPVNYG+P KLSCAEA+AATL IVGH++ A  ++++FGWG EFL+INAE+L  YAAC    EVV+AQ
Sbjct:   96 RLRSGHHRLLPFLVAANPVNYGRPSKLSCAEALAATLVIVGHQELAETLLDRFGWGREFLKINAELLARYAACESAEEVVQAQ 178
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: A0A6A3KBB7_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KBB7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.670e-32
Identity = 59/83 (71.08%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQ 249
            ++R G HRLLPFLVAAN VNYG+P+KLSCAEAIAATLYIVG +D+AV++M++F WGAEFL+INA+ L+ YAAC + AEVV+AQ
Sbjct:  122 QVRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACENSAEVVEAQ 204
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: A0A225UDS4_9STRA (18S rRNA aminocarboxypropyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UDS4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.930e-32
Identity = 56/84 (66.67%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQV 252
            ++R G HRLLPFLVAAN VNYG+P+KLSCAEAIAATLYIVG +++AV++M++F WGAEFL+INA+ L+ Y+AC +  +VV+AQV
Sbjct:  119 QLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKEEAVQLMDEFSWGAEFLKINADCLEAYSACENSEQVVEAQV 202
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: M4BTS6_HYAAE (18S rRNA aminocarboxypropyltransferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTS6_HYAAE)

HSP 1 Score: 123 bits (309), Expect = 6.570e-32
Identity = 59/83 (71.08%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQ 249
            ++R G HRLLPFLVAAN VNYG+P+KLSCAEAIAATLYIVG +D+A +VM++F WGAEFL+INA+ L  YAAC + A+VVKAQ
Sbjct:  122 QLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGCQDEARQVMDEFSWGAEFLKINADCLAAYAACENSAQVVKAQ 204
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BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: A0A1Z5KGN3_FISSO (18S rRNA aminocarboxypropyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGN3_FISSO)

HSP 1 Score: 120 bits (300), Expect = 4.010e-31
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQ 249
            +M+ GHHRLLPF+VAAN VNYGKP KLSCAEA AATLYI G +D A+ +M++F WG EFLR+N EVL+ YA+C D  EVV+ Q
Sbjct:  138 QMQAGHHRLLPFMVAANTVNYGKPSKLSCAEAAAATLYICGKQDAAIALMDEFSWGREFLRLNKEVLELYASCTDSTEVVEKQ 220
[Close]
BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Match: A0A418EUN1_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EUN1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.190e-30
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 KMRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMNQFGWGAEFLRINAEVLKTYAACLDGAEVVKAQV 252
            +++ G HRLLPFLVAAN VNYGKP+KLSC EAIAATLYIVG  ++AV++M++F WG EFL+INA+VL  YAAC    EVV AQV
Sbjct:  155 QIKSGTHRLLPFLVAANTVNYGKPHKLSCVEAIAATLYIVGLANEAVQLMDEFPWGMEFLKINADVLDAYAACETSDEVVAAQV 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41337.10633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G294_ECTSI1.250e-4385.5418S rRNA aminocarboxypropyltransferase n=2 Tax=Ect... [more]
A0A835YJ70_9STRA8.030e-3573.4918S rRNA aminocarboxypropyltransferase n=1 Tax=Tri... [more]
A0A3M6VVZ0_9STRA3.380e-3371.0818S rRNA aminocarboxypropyltransferase n=2 Tax=Per... [more]
G4ZJA7_PHYSP9.790e-3371.0818S rRNA aminocarboxypropyltransferase n=1 Tax=Phy... [more]
A0A7R9UC21_9STRA1.100e-3268.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6A3KBB7_9STRA2.670e-3271.0818S rRNA aminocarboxypropyltransferase n=2 Tax=Phy... [more]
A0A225UDS4_9STRA2.930e-3266.6718S rRNA aminocarboxypropyltransferase n=1 Tax=Phy... [more]
M4BTS6_HYAAE6.570e-3271.0818S rRNA aminocarboxypropyltransferase n=1 Tax=Hya... [more]
A0A1Z5KGN3_FISSO4.010e-3166.2718S rRNA aminocarboxypropyltransferase n=1 Tax=Fis... [more]
A0A418EUN1_9STRA1.190e-3067.8618S rRNA aminocarboxypropyltransferase n=2 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41337contigH-paniculata_contig41337:152..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue4e-35
Seed eggNOG ortholog2880.D7G294
Preferred nameTSR3
KEGG koko:K09140
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.rRNA processing
EggNOG OGsCOG2042@1,KOG3154@2759
Ec32 ortholog descriptionRNase L inhibitor RLI, possible metal-binding domain
Ec32 orthologEc-16_002000.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size264
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41337.10633.1prot_H-paniculata_contig41337.10633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41337 155..1011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930260.7795484-UTR-H-paniculata_contig41337:151..1541622930260.7795484-UTR-H-paniculata_contig41337:151..154Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41337 152..154 +
1691481214.7311652-UTR-H-paniculata_contig41337:151..1541691481214.7311652-UTR-H-paniculata_contig41337:151..154Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41337 152..154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930260.7991846-CDS-H-paniculata_contig41337:154..2801622930260.7991846-CDS-H-paniculata_contig41337:154..280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41337 155..280 +
1691481214.7416909-CDS-H-paniculata_contig41337:154..2801691481214.7416909-CDS-H-paniculata_contig41337:154..280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41337 155..280 +
1622930260.8149762-CDS-H-paniculata_contig41337:876..10111622930260.8149762-CDS-H-paniculata_contig41337:876..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41337 877..1011 +
1691481214.7527652-CDS-H-paniculata_contig41337:876..10111691481214.7527652-CDS-H-paniculata_contig41337:876..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41337 877..1011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41337.10633.1

>prot_H-paniculata_contig41337.10633.1 ID=prot_H-paniculata_contig41337.10633.1|Name=mRNA_H-paniculata_contig41337.10633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MRRGHHRLLPFLVAANPVNYGKPYKLSCAEAIAATLYIVGHEDKAVEVMN
QFGWGAEFLRINAEVLKTYAACLDGAEVVKAQVCSS*
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mRNA from alignment at H-paniculata_contig41337:152..1011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41337.10633.1 ID=mRNA_H-paniculata_contig41337.10633.1|Name=mRNA_H-paniculata_contig41337.10633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=860bp|location=Sequence derived from alignment at H-paniculata_contig41337:152..1011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATGCGTCGCGGTCACCACCGTCTTCTCCCTTTTCTAGTGGCGGCCAA
CCCGGTGAACTACGGGAAGCCGTACAAGCTTTCCTGTGCGGAGGCCATCG
CAGCGACGTTGTACATTGTCGGGCATGAGGTGTGCGGTCATATTCCCCTC
TGACATAAACCCCGTACTCCCTCCCCCTCCCGAACAAACATTTGACTCGT
GCACCGTACCCTTCTCGAACCTCATCAGCTCTTCATGGATTGGGTTGGCG
GTGGGGTGGGGGTTTGGGTGTTTTCACGCTTCATGTACTGCGTTCGCTGA
GTGCGCGGCAAGTACTTGTGTCTGGTCAAACTGTGGTCCAGTCCGGTCCG
GTCTGGTCCACTTCCATTTGATCCGGTCTGGTCCGGTTCGACGATAAACA
ATCATGGGTGGGAAATCTCCCTCCCCCCCCCCAGCACTAGAGTTAAAGCC
TACCATACTGTTTGTGCGGATTTAACATGAACAAAACTAACACAATCCTC
TCAGCAGACGCCCAAAATATCAAAATTAGTCAATCATTCTCGACAAACTC
AACGATGTACTCACGACGTACGTGCACAGAAGGTACGGGGCCTCAATATA
TATATATATATATATATATATATATATATATATTGATTTTGCGTGCAATA
TGTATGTGAGTGTGCGTGCGCTTTTGGTTCAACGGACCCTTTCGTTCCCG
TGTTCTCCCGCTCGCTCTTGCCCAGGACAAAGCTGTCGAAGTCATGAACC
AATTCGGCTGGGGCGCCGAGTTCCTACGAATCAATGCGGAGGTCCTGAAG
ACGTACGCGGCGTGTTTAGACGGAGCGGAGGTGGTGAAGGCGCAGGTATG
CAGCAGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig41337:152..1011+

>mRNA_H-paniculata_contig41337.10633.1 ID=mRNA_H-paniculata_contig41337.10633.1|Name=mRNA_H-paniculata_contig41337.10633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig41337:152..1011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTCGCGGTCACCACCGTCTTCTCCCTTTTCTAGTGGCGGCCAACCC
GGTGAACTACGGGAAGCCGTACAAGCTTTCCTGTGCGGAGGCCATCGCAG
CGACGTTGTACATTGTCGGGCATGAGATGCGTCGCGGTCACCACCGTCTT
CTCCCTTTTCTAGTGGCGGCCAACCCGGTGAACTACGGGAAGCCGTACAA
GCTTTCCTGTGCGGAGGCCATCGCAGCGACGTTGTACATTGTCGGGCATG
AGGACAAAGCTGTCGAAGTCATGAACCAATTCGGCTGGGGCGCCGAGTTC
CTACGAATCAATGCGGAGGTCCTGAAGACGTACGCGGCGTGTTTAGACGG
AGCGGAGGTGGTGAAGGCGCAGGTATGCAGCAGTTGAGACAAAGCTGTCG
AAGTCATGAACCAATTCGGCTGGGGCGCCGAGTTCCTACGAATCAATGCG
GAGGTCCTGAAGACGTACGCGGCGTGTTTAGACGGAGCGGAGGTGGTGAA
GGCGCAGGTATGCAGCAGTTGA
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