mRNA_H-paniculata_contig4127.10619.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4127.10619.1
Unique NamemRNA_H-paniculata_contig4127.10619.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4127.10619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4127contigH-paniculata_contig4127:6969..11178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size242
Cds size117
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4127.10619.1prot_H-paniculata_contig4127.10619.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4127 6969..7537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930258.6428475-CDS-H-paniculata_contig4127:6968..70071622930258.6428475-CDS-H-paniculata_contig4127:6968..7007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4127 6969..7007 -
1691481213.8591506-CDS-H-paniculata_contig4127:6968..70071691481213.8591506-CDS-H-paniculata_contig4127:6968..7007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4127 6969..7007 -
1622930258.6651828-CDS-H-paniculata_contig4127:7459..75371622930258.6651828-CDS-H-paniculata_contig4127:7459..7537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4127 7460..7537 -
1691481213.8732321-CDS-H-paniculata_contig4127:7459..75371691481213.8732321-CDS-H-paniculata_contig4127:7459..7537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4127 7460..7537 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930258.686152-UTR-H-paniculata_contig4127:7537..76071622930258.686152-UTR-H-paniculata_contig4127:7537..7607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4127 7538..7607 -
1691481213.8863757-UTR-H-paniculata_contig4127:7537..76071691481213.8863757-UTR-H-paniculata_contig4127:7537..7607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4127 7538..7607 -
1622930258.7009895-UTR-H-paniculata_contig4127:11123..111781622930258.7009895-UTR-H-paniculata_contig4127:11123..11178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4127 11124..11178 -
1691481213.899075-UTR-H-paniculata_contig4127:11123..111781691481213.899075-UTR-H-paniculata_contig4127:11123..11178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4127 11124..11178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4127.10619.1

>prot_H-paniculata_contig4127.10619.1 ID=prot_H-paniculata_contig4127.10619.1|Name=mRNA_H-paniculata_contig4127.10619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
MAGGYEGAPVSETVKDARTKLADSNMSGFTADPASWIGK
back to top

mRNA from alignment at H-paniculata_contig4127:6969..11178-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4127.10619.1 ID=mRNA_H-paniculata_contig4127.10619.1|Name=mRNA_H-paniculata_contig4127.10619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4210bp|location=Sequence derived from alignment at H-paniculata_contig4127:6969..11178- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGTAGATAAGGTGTGGTATTCCTGAGGTGACACGCAAGTATTGCTGGT
AGCAGGTAAGACACAAATGATTTCGTCGAATGATATGCACCCAATCTGAA
AATTGTAAAGGTCGTTTTGATGTATGTATGGATGGCATCATGTCTGTTGA
AAGGAGAAACGCAATATACGATATAGACAGACGTTACTTCTTAAGCCGCC
CCGCGACGGCACCATGTGCGTGCATTTTTGGCTTCTGCACACATGCTGGA
AGAGTACGATAAGGTGCTCTCCCTCCCAACAAACCAGTCGAGGGGTTTAT
AAAGCACATCACTGTACTGTCTGCATTTCATGTAACGGTACGGTGCTTGC
AATTGATTTGAGGTTTCAAAAAAGATCCGCCCCAAATAAGCAGGTTGTGC
TGATGGGTCCGCGGTCCGCACCCCAGCCGATGCACACATGACTTTTGTGG
TTATTCTGTTCAAGCGCCAACCTGTACAGTACACTGGTAATGGTCCTACC
CATCAAACTTCTTGTTCCTCCTATGCATGTTTGTTTTGAGTTCCCTTATT
AGTGTGCAGATGTGTATAATGCATCAAACCTTCAAAGACTTTTTGGGAAC
AACAATGTACATGATAGCAAATGTGGAGCGCTGCAGTCGTTGTCCTCGGA
ACTATGTCAACTCCCTGTCAATGCTGTATGTTCTATCTATATTGAGCCAG
TTGTTGGAATAGTGCCATGCAGTCGGCGGTGGTATTCCTTGCGTCGGCGG
GGGCGGCACGGGGGAAGACGGCGGAGGTGGTGCACTGGGGTCGGGCGGCT
TGTCGGGCAGTAGTGGTAGGAGAGAGACAAGCAAACCCCTCCAGCAGGGT
TGCGGCCACCAACGTTTTACCTGTGCTGTTTTTTTGTTATACAATGTGTG
TTTTAGTTTGTTCAGATGGGGAATTTTGCTTTAGCAGGTGGCGATTCTCT
TGAGACCGGCGCCGGAAGGGTTGACCTAGATAAATATAAGCATAGGATGA
GAAGGAGGGAGACCCCATATTACATTGACCGCTCCTGGCGTGTCTACACG
TTCCCACCAAGTCACCTAATAATCTTTTCCTAGCTAATGCATATCCACGT
AGTATGTAGTAAGCTCGTGATAACAGCTTAACGAAAGCACCAATGAGTTT
ATCATGACAGTTGGACCCACATCAACTTGATAAGATCAAACCGCCTGCGT
CGTTGTGCTGGTGTATAACTACTGCCTGTGTATGTCACTTGTTGTAGCTG
CTCTTCTATATATGCCTGACCTCACCAAGCTTCTCCTACCGCATGACAAC
TCTGTGGGGGCAGCTTGCGAGCTCCGGGGCTTGATGAGCTGTAGTGGGAC
GTGTACTACATACGATATCACCGGCAAGGTCCGTTCATGTAAAATATCTA
GTGAAGCGTGTTTTTGGCATGTGGGTGGCGATATCTACGTAGTTGATGTT
TATCAAGGTTGTAGAAGAGTACAAGAGAACAGGAAACTGTGTAAGAGAGC
AGACACAATTCTGTATCGGCGGCTTGCGAGTTCCGGCGCTTCAATTGGAC
TACCTAACGAACTTGAGCCTCATCGCTACGAAGGCCCTTGCACGCACTCC
ATACTCGACAAAGCAACAGAAGACTAACAACTGTTGATGCACCACAACCA
GCCGGACAAAGTGGCATTAACCTGGTTTGGATTTGGGGGTTTTACCGGGC
TACTATAGTGCAGGAAACCTGCTTCGCTCTCTGTACTGCTACAGTCAGTA
CTGGATCTAGTAGTATATAGGTCTAGTCCAGCAAATACATGGTGCAAAAA
CGACAGCAGCTGCGCTAATCAGAGAATCAATGATGATGACCCTGGGGGTT
CAAAGCACTCGTTTTGGTCAACCATGTTATGCGTACAACCACGAAATTAT
GTGAAATACGAGTTCGAAAAAAGTAGTCACTCCGGCGCCCAAAACCCCAA
ACGATAAGTGTAGAGCCGGCTCTCTTACCCATAGTTGTTGTGACCATTTT
CGAGAAATGATTGAAGGAAAACGATGCATGGGGAAGATACACGATGTTCA
TGCCTGTTTGATGCGGTTGTAAGCAGCTTTGACTGGATTTCAGCGGAAGA
GGCATCCGCTAGGCAACACTACCTACAAGGTTAACTATCAAGAGGTCTCA
GTCTCACACTATCTCCTCCCTTGTTTGTATCTATCTAAGGCCACTTCCTA
TGGTCGAAAAAAAATCCTCATCGAAAGAAGTACTGCTGGCGTTTCTCACC
GCATTTTTCGTTCCTCTCTTTTGCAGGTTCGCGTGCGAAATAGTGACCAC
ACAACTTCGCCGCTGATAACTCGACTTACCTATCGACGATCAGAGCGGAA
TATTTAGCATCATGTACGAACACATCAGCCTTTGGGTCGTGCCGACTGAG
AGATGCTGGCGTGGCTTGTGGCCGTTGTCGTCGCAACACTGGTGGCGGGT
GTTCGTGTTTTGTTTTCTTCAGTAAAATCCTAATACGGACAACCGCCACC
ATTGTTGCAACGACAACGACCACAAGCAACGCCAGCATCTCTCAGTCGGC
ACGACTCAAAGGTTACATTATGCAAAAGATTCCGCTCCGATCGTCAATAC
GTAAGTCTAGATATCAGCGGCGAAGTTGTGTGGTGATGATTTTGCACACA
AATCTGCAAAACGGGACGATAAAACGTGGCGAGAAATGCCGAAAGTGTTT
TTTCCGGAGAGGGCTTATTTTCGAGCCGCAAAAAGCGGCCTAAAGTTGTA
GCGACAGTTTAATGGACGGAAATTTCCGCTAGTACAGACATCGAGCACAG
TATTGTGAGGGCAGTGCCGCGTGTGATAGGCACAAGACACTCTACCGCTG
TCGCGCTGATGGGGAAAGCGTGTTGCGCGTGTCGCCCTCATTAAATAGTG
TCTTCCACCTGACATTTGCAGTGAAAAAATTCATGTAACGGACACCGTTT
ATCGAATGCGACGCGCGCAACACGCTTTGCCCATCGGCGCGACAGCCGTA
GAGTGCCTTGTGGCCATCACAGGGGGCATTGCACTCACAATACCGCGCTT
CCAAAGCATTATGTGCGTGTTTCGTCGCGCTTTCTACCATGTCTGTTTCG
GCGCAATTTACGCTCATTTCGCTGTCCCCAGAATCGGTACTTTGGAACCG
GAACACGTTAACGACCAATATATATATATATATATATATATATTATTAAT
ATTTTTTTCAGGCGTTTTTTTGGACGACTACCAGGTTATCATGAATATTA
AGGATGATTTTACACAATGCGTGGCCCCTAACGCGTCACAGCCTATATAT
ATCCGTAATGCTCAGCTAACATTCCTCAGGTTTGCCGGGGGCGGGCGGGA
GCGGGGAGGCGAGAATCGGGAAGCGGAAACAGGGGAGTCGCTATCTCGTG
GAAATAGGAAAATGACCGGAATGTTGTGCATATCGCAACAGAATCCCAAG
TGGCCGTAAATGTTTTTTGCGCGTCACTTTGTTACGAGGAGGAATAATCG
TAACCAACAGAAATGTCAGCTCGGGCAAAGGCTTGATATGCCGATGTCCA
CGTGCGATTTGTGGCGTTCAGGTGCCTCCGCTTCCTTTGCAACACGCTGG
TAGATAGATAGTACGAGAGGAGCCAGCATAGCGCGGCCGGCATGGCGGGC
GGGTATGAAGGAGCTCCGGTGTCGGAGACAGTGAAGGATGCACGCACCAA
GCTAGCAGATTCGAACATGGTGAGCATAATCAAATGCCCAACCGTGTGCT
CTCACGCGAGTAGGAGTTTCTTACGCTTCTTCTCTCCTTTACTAAGATAC
CGAATATCGTGGTTTTACGTGCGATGCATACAGTATCACTCCCTAATGAG
ATAATCTTTTGAAATTCGATGTTCTCGAGACAAGGCGCTTGCGACATCGC
AAAACGTGCTGTTCAAAAACAATTATTGAGACAGATTTGCCATTAGATAG
ACGTCCTCCTTCGATAGTACAGGGTCTTCAATTCGAGAAAATCCGGTTTG
TTGTGTCGCAGTCTCAAAGGATCACTTGAAAATTGACCTCTCTTACCCAG
AATCCCACTTTTGTTTCCGCCGCGAATCCGATGTGTTCGATCTTTTTGAT
CCTCTCGGGCACGCTTCTTCAATTCCCCTGACGCTTTAATTATGTGGTGA
ACGATTCAACGTCTGCGACAGTCCGGGTTTACCGCGGATCCGGCCTCATG
GATCGGCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4127:6969..11178-

>mRNA_H-paniculata_contig4127.10619.1 ID=mRNA_H-paniculata_contig4127.10619.1|Name=mRNA_H-paniculata_contig4127.10619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig4127:6969..11178- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGCGGGTATGAAGGAGCTCCGGTGTCGGAGACAGTGAAGGATGC
ACGCACCAAGCTAGCAGATTCGAACATGATGGCGGGCGGGTATGAAGGAG
CTCCGGTGTCGGAGACAGTGAAGGATGCACGCACCAAGCTAGCAGATTCG
AACATGTCCGGGTTTACCGCGGATCCGGCCTCATGGATCGGCAAGTCCGG
GTTTACCGCGGATCCGGCCTCATGGATCGGCAAG
back to top