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Homology
BLAST of mRNA_H-paniculata_contig4116.10604.1 vs. uniprot
Match: D8LIM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM1_ECTSI) HSP 1 Score: 300 bits (768), Expect = 5.590e-97 Identity = 195/299 (65.22%), Postives = 210/299 (70.23%), Query Frame = 1
Query: 277 METDLDFIRELTWYR-GAR--VRQDEYEFALVLKPNDEYRDAVEVLELALELRDGSSPVKKASPTKLKNARRVRESLAGMQQPPDLTTLGDNPSMTPYTSQSGLAGRKAG--PPQVRPGLSEGCEGNAGGGRRQRLSLLDDLQEEEGRLTARRKKELDRKKMNRLFHFVEKLKEGVIVRRHRAHHTCDQIVLQSTDDCRTIVWKPLLAAKNKNATAYNGGAGXXXGALVP--FLRLFRGGA-HRLHY--RAESIKTANIAVVLPATDPDPSHAGFFGTRALRLSEDIPNPARTFSLLYG 1143
ME+DLDFIRELT YR GA R DEYEFALVL PNDEYRDAVEVLELAL+L DG V SP KL +V+ S G +GRK G PP VRPGLSEG EG GGGRR RLSLLDDLQEEEGRLT+RRKKEL+RKK +RLFHFV K++EGVIVRRH AH TCDQIVLQSTDDCRTI WKPLLAA +GGA XXX + F L RG A RL RAE +KTA+IAVVLPATDPDPS GFFGTRALRLSEDIPNP+RTFSLLYG
Sbjct: 1 MESDLDFIRELTRYRSGAERAARNDEYEFALVLNPNDEYRDAVEVLELALDLGDGGGGVT-TSPQKLD---KVKRSGPG-------------------------SGRKGGGGPPVVRPGLSEGLEG-VGGGRRTRLSLLDDLQEEEGRLTSRRKKELERKKKHRLFHFVHKMQEGVIVRRHLAHRTCDQIVLQSTDDCRTISWKPLLAA--------DGGAXXXXXXAISGLFQSLRRGAAGSRLSKKNRAECVKTAHIAVVLPATDPDPSQPGFFGTRALRLSEDIPNPSRTFSLLYG 261
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_004370.1 |
| Exons | 5 |
| Model size | 1145 |
| Cds size | 1143 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4116.10604.1 >prot_H-paniculata_contig4116.10604.1 ID=prot_H-paniculata_contig4116.10604.1|Name=mRNA_H-paniculata_contig4116.10604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=381bp
TKQHVLIESPPKACACASAAVAPPTSGSHGGFARGVDDVPTSPRRTESAG
MNSHTHAAAPASAVATHASTRVELQRQGSAGSKNNSGDDEDAMETDLDFI
RELTWYRGARVRQDEYEFALVLKPNDEYRDAVEVLELALELRDGSSPVKK
ASPTKLKNARRVRESLAGMQQPPDLTTLGDNPSMTPYTSQSGLAGRKAGP
PQVRPGLSEGCEGNAGGGRRQRLSLLDDLQEEEGRLTARRKKELDRKKMN
RLFHFVEKLKEGVIVRRHRAHHTCDQIVLQSTDDCRTIVWKPLLAAKNKN
ATAYNGGAGGGGGALVPFLRLFRGGAHRLHYRAESIKTANIAVVLPATDP
DPSHAGFFGTRALRLSEDIPNPARTFSLLYG back to topmRNA from alignment at H-paniculata_contig4116:9492..14561+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4116.10604.1 ID=mRNA_H-paniculata_contig4116.10604.1|Name=mRNA_H-paniculata_contig4116.10604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5070bp|location=Sequence derived from alignment at H-paniculata_contig4116:9492..14561+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAAACAGCACGTGCTGATAGAATCGCCGCCAAAAGCTTGTGCTTGTGC
TTCTGCTGCTGTTGCTCCTCCCACCAGCGGTAGTCATGGTGGCTTCGCCC
GGGGGGTGGACGACGTCCCGACTTCCCCTCGTAGGACGGAGTCTGCTGGA
ATGAATTCTCACACGCATGCTGCCGCTCCCGCTTCTGCTGTCGCTACGCA
TGCTAGTACGAGGGTGGAGTTGCAGAGACAGGGCAGCGCGGGAAGTAAAA
ACAACAGCGGCGACGACGAGGACGCGATGGAGACAGATTTGGATTTTATT
CGAGAGCTGACGTGGTACCGGGGGGCGCGAGTCCGGCAAGATGAGTGAGT
GCTTCTTTTTTCAAGTATATATGTACGTATATATACTAGTGTTTGTGCTG
TGTATGTCTGGTCTTGGTTGGTGTTTGATTTTCTGCTTGTGCTTGCGTCG
TTCGTTGGACGTGCCTTACGTTTGCGTTGCTTTGGTGATCGTTGCTGTGC
TGTGCTGTGCTGTGCTATGCTCCGTTGTATTGATGTGTGCTTTTTGGCTT
CGGCCTAGTCTTTCTTTCGGTACTGCTTCGTGCTGCTCTGCTTATCTTTG
CTCTCCTTCGTTGTGCTGTTTTCGTGGCTTACATGCATACGACTCATTAG
TAAGGTGCAAGGTTATGACGGTGGTCGTTATTCTCGAATGATGTGTTTTC
AGCTTGTAGTCAAGTAACTCCTGGGAAACGAATCTTGATGCAAGCGCAGC
GAGTCTGCTCGTCGAGGACACAGTGAACTAAACTGCATGGGCATAGCCGT
GGCTCTGCTACTCGTGCAGACATAAATAAACACAAGGTATACGTACCATA
ATTAACCATTACGAAGGTACATTGTTGTAGGACCAAATTGTTGCTCTTTC
TCACGATGGGCCTCCAGGGAACTCGGTGTATCTCCACGATCACGGGGGTA
ATCGAAAACCGAAACGTGGGTGCACACACGGCATGATTGAGATGGTTCCA
CACATACCTATTCCGCATTTTGGGTTGGTGGTTTGAGTTCAGACTTCAAC
TCCCTGATGAAAAAACAGATGCGAAAGATTGCACCCCGGAGAGATAAGAA
TGGAGCATTCGCAACTATCTCGAATTATCATTTATTTTTGTCTTGGGTAG
ACACGCATTTATTCGTTTACAAGTCTATGAATGGCCACTCTACATATTGT
GACCAGGTGGCTGTATACCCGGCGAACAGTCACACATGAAGGTCTTGTTT
GTTTTTTCCGGATGGTAGTACTGTACGGATTGAATACTCTTATCTGCCCA
AGCTTTTTTATGCTCCATGGTATATCCAATATTCTCCATATTATTCGCGT
CGCGTGGGTATATCTGCCCCAACTCAATAGAATATCGTATTCGTTTCAGA
TTTCTCGTATGTGGAAGATTGTTGTGCCTGAATATGCTGAAAAATGAACC
GTTTTTTATTGATTTTTTTTTTCAAGACTTTCGCGCGGTATAGCCGAAGT
CAGCTTGTTGTAGTTCCAAAATCACGGGGCTAAATCGAAAACAAGAACGT
GGGTGCGCATCGCATGGTTGAAACGGGTCCACACAAATCGGTTCCGTACG
TTGGTTCCGTCGATCGAGGTCAAATTCTCGTGCCCCCAGTAGAGCAACAA
TTTAGTACTAATAACAATGTGTTTCTGTAATATCATGATATCAACACCAG
GAATACCGTAACGTATCGCAACGTAATACGAAGACCATACCAACAAGGAA
TTGATCGATCGTTTTGCACTACCGACCAAACAGACAACGTTGAAGGTCAG
GTTAAGTGGTTTATTAGACGTTAGCTGGATGATCTGTTTCTACATCCTTC
AAAAGAATTCCATTCAAAATGTTGCCCTACTGCTACTGTTGCTCCTGCTG
CAGGTACGAATTTGCGTTGGTGTTGAAGCCCAACGACGAGTACAGGGATG
CCGTAGAGGTGCTGGAACTGGCGCTGGAGCTGAGAGATGGCTCCAGCCCC
GTCAAGAAAGCCAGCCCGACCAAGCTGAAGAATGCAAGGAGAGTGCGCGA
ATCCTTGGCCGGCATGCAACAGCCTCCTGACTGTGAGTACACGAGCACCT
GTGGATCGTTTGGGGCAAGTGTTTTGCTTCCCGGGCGGGGGGAGTGAGGG
GTTTGTGGAGGATAACCTAAAACCGATCCAACCGGACATTCAGAGCTCCA
TTTACAAAATATGTACTTGCCATATTAGAAGATGTGCCCCATAGCCACTG
GTCACTTGAATTTGCAGGTGTACTCCAGTCGTGTTAATCAATTTCACAAA
AACAATCAAATTCGAGTAGAGGGGGTTGGGCGGGGGAGGGGGGTCAGGGG
GTGGCTGCGGTGCTGGTTGTAGCAGTAGTAGTATTAGTAGAAATAGTGGT
GATATCGTCGTTGCTCTGGGCTCTTGGCTCTTTTCTTGCTGTCGTTGAAG
TTGCTGCTGCTGCTGCTGCTGCTGTCGTGCTTACTGCATGTATTTATTTT
CCACGTAGTACATACGATGATACATTTCCTGTGCTTCGTTGCCACTGACC
AAAAATAGGTAACGACCATACTTGAGAAAAAATTACCTGCGACAATCACG
TCATTCATCGGACGTTTACCGCATGATGGTGTTCGTATTATTTGCTTTTT
TCTTTCACATGGAAACGTTCACATGTCGTCTTGCGTGTGTATGTGTTTGT
CGTGGTCTTGTTCTGTTTTTTTCGCAGTGACTACGCTGGGGGACAACCCC
TCGATGACCCCGTATACATCGCAGAGCGGCTTGGCGGGACGCAAGGCCGG
GCCGCCACAAGTGAGACCCGGGCTCTCGGAAGGCTGCGAGGGCAACGCGG
GCGGGGGACGCCGGCAGCGGCTGAGCCTTTTGGATGATTTACAGGAGGAA
GAGGTATCAACAGCATAGCAAGTCGCGAACTCTCTATAGTGGGGATTTTG
TGGTGTTTGGGATTTTAGAACATAACACGTGGGTACGAGGTACCTGGAAC
TTCGGAAGGACACCAATTTGATTTATGTTGTAATGAAAAAGAGAGATTTC
TGTTCACCAATTTCTGAGGATTTTTATTTTTTATTTTTTCATTTTCGCGA
ATTCGTTCTCATGTCGGAAACCTCCGATCGAAAGCCTGGGGGCGCAGTGT
CTTGATTTTTGTCCTAGATTATCGGATGGTATATCGTAATACATGCAATG
ATAATGGATAATAACAGATGGTCATACTAATGTTATTGTATGCATTGGTG
AAATAAATGAGCTGCTTGGCTTGGGGCGACTGAGTGACTGAGTGACTTGC
AGATATTTGCAGATATTTCCCGACCGCGAAATCGACACAAAAGGGTGCGT
TACATAGGTGAAAGAAATGTAGAAGATCGTTCCATTCGCACTTGACCGAG
TATTTACTGCTGCTGCAAAGTATTTTTTCTATACCATACTAGGTAGTTTT
TGGGAACAAAATACTCTGCAGATAAAGAGTAGTTCTATATACAATTATGT
CATTGGATCGGGGGGTGGGTTGGTAAGCCAGTCAGTCAATCAATATGTCA
TTATTGGAGAAGCATGGACACTCCAAATAAAACTATCCTCGGAGTGACAA
CTAACTAATGTTCTTGACCGCGTTACAGCTAATTAAACCTCTTGTTGTAT
TTCGTTTTGTGTCTTAGTTGTCTACTGTTGATGTTATACCTGGAGCCGCG
CCTGTTGCTTTCACGAACAGCATTTTCTTCGACCCTCCCTGCCAAGAAGG
GTGTCCTTTGTGCGAATAATAAGGAGTCCTTGAAATTCCAAAATTCGGTA
CGGAGGCCTGAATTTTCGAAATTTGCAAAAGTTCTTCGAAAAACAGACTC
TACGTTGAACAAGTGTCTTCTTTTACCTGTAGTTCATATGGGGTTGGGGC
GGCGGGGGGTGGCTCCTTAACGCGCGCGCGGGTGGGCGGGGGGGGGGAGG
GGGGGGGGTTGGGGCATCTCTCTGTCGTACTTCGTGGCTCATCCCGGAAA
CTTAACCCTTTTTTCTTCTTTGTCGAACTCGCTCTGATAACAGACATGAG
AATATTTGGATGTACTTACAACTATCTTCAGTCGCCTTAAAGCGTTTGTT
CGTTTCACGCTTGTTTTCTTGTTTTGTACTCTTTTTTTTTTTTTTTTTTT
TCACTCCGTGGATTTCATCCGGAGAGCAGGGACGGCTGACCGCCAGGCGG
AAAAAAGAGCTAGACCGGAAAAAAATGAACCGCCTTTTTCATTTCGTCGA
GAAACTGAAGGAGGGAGTTATCGTGAGGAGACACCGCGCCCACCACACCT
GCGATCAGATCGTCCTACAAAGCACGGTATGGGCGGGGGGGGGGGGAGGG
GGGACGGAAAGGTTTTTTTACCTCAGCCTTCCGGGGGTTAAAAAAAAAAA
AAAAAAAAAAGGGGAGGGGAGGGGGGTTCATCACATTAGGTCATCACTTC
GTCAGATACCGTTGGTCATAGACATTCGATTCAGCTCGGTGCGTCTCCAC
ACTCAGAGCGTTAAACGAAAACCGAGTTGTCCGTGCACATCGAATGAATG
AGACAATTCCACACATACCGGCCCTGCATATTGTTTCGGTCGAATGAGGT
CAGACTGTCGTTTTCCAGGTAGGGCAAGAAGTTGGTTCCTATTTACTAAC
AAGGTGCCTCCGTAATATTGAAAAATGGAAAATAACCCGTTAAAAACGCT
ACGAATGTACGTAATACGACATGCACACAACGGATACCACCACCCCACCA
CCCTAACCCCAATCTGTACATAGGACGACTGCCGGACCATAGTATGGAAA
CCTCTTCTCGCAGCGAAGAACAAAAACGCCACCGCCTACAACGGAGGGGC
GGGAGGCGGCGGCGGAGCCTTGGTACCGTTTTTGAGATTGTTCCGCGGCG
GAGCGCACAGACTACACTATCGTGCGGAGTCCATAAAAACGGCCAACATC
GCCGTGGTTCTTCCCGCAACAGACCCGGATCCGAGCCACGCGGGTTTTTT
TGGGACGCGGGCCCTTCGCTTGTCCGAGGACATCCCGAATCCTGCTCGCA
CTTTTAGCTTGCTGTACGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4116:9492..14561+ >mRNA_H-paniculata_contig4116.10604.1 ID=mRNA_H-paniculata_contig4116.10604.1|Name=mRNA_H-paniculata_contig4116.10604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2286bp|location=Sequence derived from alignment at H-paniculata_contig4116:9492..14561+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAAACAGCACGTGCTGATAGAATCGCCGCCAAAAGCTTGTGCTTGTGC
TTCTGCTGCTGTTGCTCCTCCCACCAGCGGTAGTCATGGTGGCTTCGCCC
GGGGGGTGGACGACGTCCCGACTTCCCCTCGTAGGACGGAGTCTGCTGGA
ATGAATTCTCACACGCATGCTGCCGCTCCCGCTTCTGCTGTCGCTACGCA
TGCTAGTACGAGGGTGGAGTTGCAGAGACAGGGCAGCGCGGGAAGTAAAA
ACAACAGCGGCGACGACGAGGACGCGATGGAGACAGATTTGGATTTTATT
CGAGAGCTGACGTGGTACCGGGGGGCGCGAGTCCGGCAAGATGAACGAAA
CAGCACGTGCTGATAGAATCGCCGCCAAAAGCTTGTGCTTGTGCTTCTGC
TGCTGTTGCTCCTCCCACCAGCGGTAGTCATGGTGGCTTCGCCCGGGGGG
TGGACGACGTCCCGACTTCCCCTCGTAGGACGGAGTCTGCTGGAATGAAT
TCTCACACGCATGCTGCCGCTCCCGCTTCTGCTGTCGCTACGCATGCTAG
TACGAGGGTGGAGTTGCAGAGACAGGGCAGCGCGGGAAGTAAAAACAACA
GCGGCGACGACGAGGACGCGATGGAGACAGATTTGGATTTTATTCGAGAG
CTGACGTGGTACCGGGGGGCGCGAGTCCGGCAAGATGAGTACGAATTTGC
GTTGGTGTTGAAGCCCAACGACGAGTACAGGGATGCCGTAGAGGTGCTGG
AACTGGCGCTGGAGCTGAGAGATGGCTCCAGCCCCGTCAAGAAAGCCAGC
CCGACCAAGCTGAAGAATGCAAGGAGAGTGCGCGAATCCTTGGCCGGCAT
GCAACAGCCTCCTGACTGTACGAATTTGCGTTGGTGTTGAAGCCCAACGA
CGAGTACAGGGATGCCGTAGAGGTGCTGGAACTGGCGCTGGAGCTGAGAG
ATGGCTCCAGCCCCGTCAAGAAAGCCAGCCCGACCAAGCTGAAGAATGCA
AGGAGAGTGCGCGAATCCTTGGCCGGCATGCAACAGCCTCCTGACTTGAC
TACGCTGGGGGACAACCCCTCGATGACCCCGTATACATCGCAGAGCGGCT
TGGCGGGACGCAAGGCCGGGCCGCCACAAGTGAGACCCGGGCTCTCGGAA
GGCTGCGAGGGCAACGCGGGCGGGGGACGCCGGCAGCGGCTGAGCCTTTT
GGATGATTTACAGGAGGAAGAGTGACTACGCTGGGGGACAACCCCTCGAT
GACCCCGTATACATCGCAGAGCGGCTTGGCGGGACGCAAGGCCGGGCCGC
CACAAGTGAGACCCGGGCTCTCGGAAGGCTGCGAGGGCAACGCGGGCGGG
GGACGCCGGCAGCGGCTGAGCCTTTTGGATGATTTACAGGAGGAAGAGGG
ACGGCTGACCGCCAGGCGGAAAAAAGAGCTAGACCGGAAAAAAATGAACC
GCCTTTTTCATTTCGTCGAGAAACTGAAGGAGGGAGTTATCGTGAGGAGA
CACCGCGCCCACCACACCTGCGATCAGATCGTCCTACAAAGCACGGGACG
GCTGACCGCCAGGCGGAAAAAAGAGCTAGACCGGAAAAAAATGAACCGCC
TTTTTCATTTCGTCGAGAAACTGAAGGAGGGAGTTATCGTGAGGAGACAC
CGCGCCCACCACACCTGCGATCAGATCGTCCTACAAAGCACGGACGACTG
CCGGACCATAGTATGGAAACCTCTTCTCGCAGCGAAGAACAAAAACGCCA
CCGCCTACAACGGAGGGGCGGGAGGCGGCGGCGGAGCCTTGGTACCGTTT
TTGAGATTGTTCCGCGGCGGAGCGCACAGACTACACTATCGTGCGGAGTC
CATAAAAACGGCCAACATCGCCGTGGTTCTTCCCGCAACAGACCCGGATC
CGAGCCACGCGGGTTTTTTTGGGACGCGGGCCCTTCGCTTGTCCGAGGAC
ATCCCGAATCCTGCTCGCACTTTTAGCTTGCTGTACGGGGACGACTGCCG
GACCATAGTATGGAAACCTCTTCTCGCAGCGAAGAACAAAAACGCCACCG
CCTACAACGGAGGGGCGGGAGGCGGCGGCGGAGCCTTGGTACCGTTTTTG
AGATTGTTCCGCGGCGGAGCGCACAGACTACACTATCGTGCGGAGTCCAT
AAAAACGGCCAACATCGCCGTGGTTCTTCCCGCAACAGACCCGGATCCGA
GCCACGCGGGTTTTTTTGGGACGCGGGCCCTTCGCTTGTCCGAGGACATC
CCGAATCCTGCTCGCACTTTTAGCTTGCTGTACGGG back to top
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