mRNA_H-paniculata_contig4116.10603.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4116.10603.1
Unique NamemRNA_H-paniculata_contig4116.10603.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4116.10603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4116contigH-paniculata_contig4116:5809..9294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930256.8722022-CDS-H-paniculata_contig4116:5808..58711622930256.8722022-CDS-H-paniculata_contig4116:5808..5871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4116 5809..5871 +
1691481213.0896354-CDS-H-paniculata_contig4116:5808..58711691481213.0896354-CDS-H-paniculata_contig4116:5808..5871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4116 5809..5871 +
1622930256.888307-CDS-H-paniculata_contig4116:9002..92931622930256.888307-CDS-H-paniculata_contig4116:9002..9293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4116 9003..9293 +
1691481213.1002839-CDS-H-paniculata_contig4116:9002..92931691481213.1002839-CDS-H-paniculata_contig4116:9002..9293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4116 9003..9293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4116.10603.1prot_H-paniculata_contig4116.10603.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4116 5809..9293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4116.10603.1

>prot_H-paniculata_contig4116.10603.1 ID=prot_H-paniculata_contig4116.10603.1|Name=mRNA_H-paniculata_contig4116.10603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
VFGGAAAAAASGFLLGSSQFQSSVLSRSFDSSHSMSDFGGSTQSAGTYEA
HEDNNLDPPGPGLHSGSGPLYNPPVTPRALPAPPAPQFEAPLSPASIAAL
TPSFFHDNGSSGGGGVVG
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mRNA from alignment at H-paniculata_contig4116:5809..9294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4116.10603.1 ID=mRNA_H-paniculata_contig4116.10603.1|Name=mRNA_H-paniculata_contig4116.10603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3486bp|location=Sequence derived from alignment at H-paniculata_contig4116:5809..9294+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTTTGGCGGGGCGGCGGCGGCGGCAGCTTCAGGGTTTTTGCTCGGGAG
CAGCCAGTTTCAGGCGAGTGCCCTGTTAAAAAAGACTAAACTTAGGAAGT
CGCCCCGTGGCGCTGGCTCCGTCAGGTTCAAGGAGTGACGACAGCCGTGG
GGAATCAAAAATGATGTTTGCCCTTGAACGAGTGTCCATTTTCTCCTCCC
TGTTTTTGTGTCGTCAATTGGATGTGCTATTTTTATATAACGTGGTAAAT
AAGGTGTATTTGTAAGGTCGTTCCGCGAGATATAATTTTGTGCTTTGTTT
GTCTGGTTGTGTCGCTCGCGGTGGGAGTGCTGTAGTCCAAGGATAGGGTT
GGGGTTCCGGTTGGTCAAAGGGCGGGAGGGGGGGGGAGGAATAGCGACAT
TACTCGCGTTAATTGCCAAGGACAGCTTTGCCAGCAGGATGGCATCTTAT
ACACTATGAGAAAATATGGCTTGGAAAAATTACCCTATAGTAAAGAGAGT
GAAAAGTACAAGCAGGTATTCATGAATTGCTGTGCTGTAGAAAACATGAA
AATAATAGTAAAACAAGATCGAGGTATACTCAGCGTGTTCAAGCTGGTGG
ATTACTCTTTTCACGAAATGGACAAACTAGGGGGGTGTGTTAGAGAGATT
GGCGTCAACGTCAACTCGCCTTGTAGCTGTTGAATTGGTGGTCAGAACGA
ACGAAGGAGTACCGCCCGAACTTCTTTCAATCAGCCCCAATGTTGCGTGT
CTTTTTGTCTTTCTCAATTTGTAGTTTCTTTAGGGGGGATGTGCAAGCTA
CTGGGTGTCATTACTTGTCTGGAGTTACGTAGGCTGTTCACGCCGTTTGT
AGAGCAGCCGGCCATAACTGCCAATGTGGCTGTGTAACACGGTTAATATG
CGACTTTTCAATATAGGTTTTGTGGGTTATGGTTCGTCAAATTAATGCAT
TTCAACAGAAGGTTGTGTAATATCAAGCAGAAACGAGTTACCTGTGATGT
GGGAAGATATCCTTTGGAAGCGGATACTTGGGTTCCCACTAGCGTCTTTC
AAGGACGACACTCTCTTTTCACGGTGGTGATATCTGTGAGATTCGAACTT
TAGCATGCGAAGCTCAATGCATTAACATTGCTGCTTTTATAGCTGATGGT
TGGTGCGGAACTTGAGTCCGCAATATTCCGGACCAGAGGCACACGAAGTA
TATCATCTAGTGATGTCGCCATTGCAAAAGAAAGGGTATCCGGTACAGAT
ACGTAGGGAAATATCCACTTTTATTGGGTTATCTTCCACAGGTAGCGTCG
TCTGGTACTTCCCTCAGACGGGTGCTACACAAATGGGGTAAAGATGCCCT
TGGCCTGGAGCTGTATATACTATATTCGAAATTCCGACATATGGTGGTTC
CGGCGATGCTCGAGAATTTTTGGCGGTGCAACATAGTGGGCGAGAGACCC
ACGCCTTGCGCCCTACCCACTGCCGAAACAAGATGTCGTCTACACGATTT
GTAATATTTCCTTGGAGAACCTACGATCAGCGCTATTCCCTGAGAAAACT
CACCATATCGTAAAATAAGTTGTATACACGATGTACCGCCTCTCCCATCT
TGAAGATGCCCGCAGCCGTGGACCCTGATCGATATCTCGCCCGACGATAG
AACAAGGGCGGAAGAGCTATGTGCTGCCATATTCCGACCCAAAAGAGACA
AGTTTGTTTGTATTATTTAACAGAGTGGTTGTTACCCGCTTTTACATCTT
CGAAGATGCTTCTCGGGAACGAATTAGGGCACTTTGAAAACAGATGTCGA
GAGAGCGCTGCGGTAAATTTAGTCGTTGCGGGCACAAACCAAGGCAAAAT
CAAGTAAACGTCGTCCAGTTGGGTTTTCTTTCTTCGATTCGCAGCAACTC
TCTCCATTCCCGTGAGTAACTCGTGTTAAAGGCGTCGCTTTTTCCCTGTT
TCATGTAAGGGGCAGTTGGGGACGAACTAGTGCTGAAGGGATAACACATA
AAGGGCGTGTGGGAGGAGGCAGTCAAGTTTCCGCCTCGGACGGCAAGCGA
GGCAGACGCCAACATATTGATGAGCATCACGAAGCTGTAAATCGCTTGAA
AGCAGATCGAGCATGCAGGACCACCATAAATTTTGCGGACCCCTATTGGG
TACAAGCAGCACCTGCGCGCATTCAGCTCTGCAGATTTGATTATTGAAGT
GTTCACCGGGTGGACTCTCTGCTTCTTACTCACCCATGACAGAAATTTTG
ATGGTTCGGTTCGCGGTCTTTTTCCTCTTTTGTATTTTTTTTCCCGTTAT
CCCGATTTTTTTTTTACATCCGTTGTTTGTGTCATTGTTTGCACTTTGCT
GTACGCAATTTTCCACCTAATAAAGAAAAGTTTTTTCAACAGTAATAGCA
CCAATCTAATTGTTTATCTACCTGTCGATTATCGTAAAACAGGTTAGGAT
CACCGTCGTTCGGGCAAAAAATGCGTTTATCTAGAACGTGGGTTTTTACG
TTGTAGGGCATCAGGCGTCAATTTTTGTCCGTCGAGCACCCGTGTCACAT
GGCGGTGCCGCACGAGAACAAGAACAAAAAACAAGGAGTAAGCATGGTAT
TCTGGTGGCCATCTGAAGTCAACCCTTTCTAGGACGTTTCGCCTGTCTTC
TCTATTTTACAACTGCAGTTTGCCGTATTCACAAGAACGTTTCTAACTCC
AAGAAGTCTTTCATCCCCCCCCTCCTCCCTCGCCCCTCCCCAAGCTGGCC
CAAGTCCTCCCTAAACTAATGTCCTCACACCTATTTAGTGTGGTGCAGCA
CATTCTATACACGGGCACAATTAGTCTCCCACTGAACCGACAGATCACCC
TCACAGGTCACAAAATCTGCCTTGCATCACCCGCCGCCCCTATATCGCCT
GCTCTATCTCACCGCAGATACGCCCGCGGTTTCTTGCTTATTACAAAACA
GATATCTGTCCAAACATCCCACCCACCGACATAGTGTTCCCACTCCTTCG
TCTGTTCATCCAAGTACCCCTCCCATCCGCCTCTGCCTGCGTCCCTTCGC
CAATGCTCTAAATAGCAGCCAACACATGTATAGTATAACGAAGAATAACA
TGGTGGACCTGAAATATGACAACGCCCCCCCTCCCCCCCTTTCCCTCCCC
CCTCCCCAACCCTGCTCCTCTCTTCAAAACCGACCGCTCCCCAGTCAAGC
GTCCTATCTCGCAGTTTCGATTCGTCGCACAGCATGTCCGACTTCGGAGG
CAGCACCCAGAGCGCGGGTACATACGAAGCCCACGAGGATAACAACCTCG
ACCCGCCCGGACCGGGTCTTCACAGTGGATCCGGTCCTTTGTATAATCCC
CCGGTGACGCCCAGAGCCCTGCCGGCGCCGCCGGCGCCGCAGTTCGAGGC
GCCTCTAAGTCCTGCGTCAATCGCGGCGTTAACGCCTTCTTTTTTCCACG
ACAATGGTAGTAGTGGTGGTGGTGGTGTTGTTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4116:5809..9294+

>mRNA_H-paniculata_contig4116.10603.1 ID=mRNA_H-paniculata_contig4116.10603.1|Name=mRNA_H-paniculata_contig4116.10603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig4116:5809..9294+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTTTGGCGGGGCGGCGGCGGCGGCAGCTTCAGGGTTTTTGCTCGGGAG
CAGCCAGTTTCAGGTCTTTGGCGGGGCGGCGGCGGCGGCAGCTTCAGGGT
TTTTGCTCGGGAGCAGCCAGTTTCAGTCAAGCGTCCTATCTCGCAGTTTC
GATTCGTCGCACAGCATGTCCGACTTCGGAGGCAGCACCCAGAGCGCGGG
TACATACGAAGCCCACGAGGATAACAACCTCGACCCGCCCGGACCGGGTC
TTCACAGTGGATCCGGTCCTTTGTATAATCCCCCGGTGACGCCCAGAGCC
CTGCCGGCGCCGCCGGCGCCGCAGTTCGAGGCGCCTCTAAGTCCTGCGTC
AATCGCGGCGTTAACGCCTTCTTTTTTCCACGACAATGGTAGTAGTGGTG
GTGGTGGTGTTGTTGGTTCAAGCGTCCTATCTCGCAGTTTCGATTCGTCG
CACAGCATGTCCGACTTCGGAGGCAGCACCCAGAGCGCGGGTACATACGA
AGCCCACGAGGATAACAACCTCGACCCGCCCGGACCGGGTCTTCACAGTG
GATCCGGTCCTTTGTATAATCCCCCGGTGACGCCCAGAGCCCTGCCGGCG
CCGCCGGCGCCGCAGTTCGAGGCGCCTCTAAGTCCTGCGTCAATCGCGGC
GTTAACGCCTTCTTTTTTCCACGACAATGGTAGTAGTGGTGGTGGTGGTG
TTGTTGGT
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