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Homology
BLAST of mRNA_H-paniculata_contig4116.10602.1 vs. uniprot
Match: D8LIM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM2_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 3.080e-12 Identity = 62/137 (45.26%), Postives = 78/137 (56.93%), Query Frame = 2
Query: 377 MSNWGDDRGM--EVGGRPMSPMGAPERDRSSRRLNQTRSLTPPPRRPVPPPKPELPMRPFQSEGVPLPRPRSVSPPRNILHSSSSSSSLSSNHAPSVTGSSLSVRMERAPISRSNSVRANARPLPPPPKTRARFAAQ 781
MS WG + ++GGR + E+DR+SRRL T SLT P R P KPELP RP + LPRPRS+SPPR L PSVTGS+LS R+ERA + R+ S +N P+ KTRARF+A+
Sbjct: 1 MSGWGTPKSAAGDIGGRSPRAVDGREQDRASRRLGLTHSLTSP--RAPEPAKPELPARPNSDD---LPRPRSLSPPRRNLA------------PPSVTGSALSARLERASLVRTASS-SNGPPIXXXXKTRARFSAK 119
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1085 |
| Cds size | 708 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4116.10602.1 >prot_H-paniculata_contig4116.10602.1 ID=prot_H-paniculata_contig4116.10602.1|Name=mRNA_H-paniculata_contig4116.10602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MSNWGDDRGMEVGGRPMSPMGAPERDRSSRRLNQTRSLTPPPRRPVPPPK
PELPMRPFQSEGVPLPRPRSVSPPRNILHSSSSSSSLSSNHAPSVTGSSL
SVRMERAPISRSNSVRANARPLPPPPKTRARFAAQLDVPVTPTGRDGSFS
FAGVTAVEEPEQAVAVAAVPAKEGKNEPARPVSPGPVSAREVATQAIEKR
MQDSGMETGGGCSTNSRAVDMRVMIERAEEEESRVE back to topmRNA from alignment at H-paniculata_contig4116:3810..5739+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4116.10602.1 ID=mRNA_H-paniculata_contig4116.10602.1|Name=mRNA_H-paniculata_contig4116.10602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1930bp|location=Sequence derived from alignment at H-paniculata_contig4116:3810..5739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGCCGTTAGTGCAGAGCAGGGTATATATAGTTGTGCGCATGACGAGAG
GATCTTCACAGCGGTGGAGACTATAGATCCATAGTCGTGCTTCAACACAT
AGAGAACATTAGCAGGAAGAACGGTGTGCAACACTCAGGGTGGCCAAGGT
GCTGAGGGGAAATTTTGTCATCCTTCCTTAACAGTTTAGGAAAGTAGAGA
ACAAAAAATAGACCAGAAACACCCAACGGCGAGAATTCTGTCGTGGTGTA
GGATTTCGAGGGTCACCATCAGAGCACGTTACATAGGGTCTCGCTCGAGG
GGAGATCGAATTGCATAAATAGTAGTCCATCTGCCAGATACCGTTGGAGA
ATATTTTCAGCGTTTACCGTCCCGTCATGTCTAATTGGGGTGATGATCGC
GGGATGGAGGTTGGTGGGCGGCCCATGTCTCCCATGGGCGCGCCGGAGCG
AGATAGGTCTAGCAGGCGGTTGAACCAAACACGCTCGCTGACGCCCCCTC
CGAGGAGACCTGTGCCGCCCCCGAAGCCTGAGCTACCTATGAGGTGAGAA
TTCTAGTGCGGGACTCGTGGGACTGATGTGCTCTGGCGGTTGTGTCAATT
GTCGCTGGGAGTCGACTGCTTAGGTCAAGTGCTGTGGGTTAAAACTAGGT
GGCTGACTGTTGTTTATTCTGTCTGTGATAAACTATCCCATCTGAAAAGG
TGCGACGCTCAGAGTTAAACACCTCATGAGAAGTTGAGGATGGTCTACTA
CAGTCAGTACAGACTAATGCATTTGCACACTGCGCAATTCTTAGAAGGAC
TCGTCCTGTGTGCTGGAATGTGTTTTCTCTGTGTCGATGCATTATCATCA
ACAGAAGCTTTGCGCTTTGGGTGCACAGCTGCGGGCAGCTGCATGCACGA
TATGGTATCAACTATTCTCTTATATGTCACTTGGTGTGCAGTATACCTTT
TGCATCGCTTTTGGAGCAAAAACAATTCATGAGGGCACCATTTGCAGGTA
CTGCTGCTCGGTCTATTCTGTACTATTATATAATACTGTAAATGATCCAT
TGCAAACTTTTAACAACTTTCATGTGTCGTTATTGCCATATCTACATCAA
TCTCTGCGTACTGGATATCGCAGTAGGGCTACAGCAGTAATAGTAACCTT
CGATGTTTCAAACATCACTCCACGTGCAGACGCAAAACTTTGACTGCAGC
CCCGACCCACTGATAGTCTCCAGTCATGGATACTACAGTGACCAGACGAC
CTCAAAACGATTGGCATTTCATAAACTGACTGTTCAATATTAATTCACGC
CGACAGGGACCACTGGCCTGACCACAACCTTGAAACTATCGTCTTCTTCC
TCGTCCCCCACGCCGACCCTCCTGGAAAAACACAAGCAGGCCCTTCCAAT
CAGAAGGCGTGCCCCTGCCGCGTCCGCGAAGCGTTTCCCCTCCGCGAAAC
ATCCTCCACAGCAGCAGCAGCAGCAGCAGCCTCAGCTCTAACCACGCTCC
TTCGGTCACCGGGAGCTCCCTCTCCGTGCGGATGGAAAGGGCCCCAATCT
CTCGCTCCAACAGCGTCCGCGCCAACGCCCGCCCTCTCCCGCCGCCGCCC
AAAACCCGCGCGCGTTTTGCCGCACAGCTGGACGTGCCCGTTACCCCCAC
GGGCCGCGACGGCAGTTTTTCCTTCGCGGGTGTCACCGCCGTGGAGGAGC
CGGAGCAGGCGGTAGCGGTGGCGGCTGTGCCGGCCAAAGAAGGAAAAAAT
GAACCAGCTAGGCCTGTTTCTCCGGGTCCCGTGTCTGCTCGCGAGGTAGC
TACACAGGCCATAGAGAAGAGGATGCAAGACAGCGGCATGGAAACCGGTG
GCGGCTGCAGCACCAACAGCCGGGCAGTAGACATGCGGGTTATGATCGAA
AGGGCGGAGGAGGAAGAAAGCAGAGTCGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4116:3810..5739+ >mRNA_H-paniculata_contig4116.10602.1 ID=mRNA_H-paniculata_contig4116.10602.1|Name=mRNA_H-paniculata_contig4116.10602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig4116:3810..5739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTAATTGGGGTGATGATCGCGGGATGGAGGTTGGTGGGCGGCCCAT
GTCTCCCATGGGCGCGCCGGAGCGAGATAGGTCTAGCAGGCGGTTGAACC
AAACACGCTCGCTGACGCCCCCTCCGAGGAGACCTGTGCCGCCCCCGAAG
CCTGAGCTACCTATGAGATGTCTAATTGGGGTGATGATCGCGGGATGGAG
GTTGGTGGGCGGCCCATGTCTCCCATGGGCGCGCCGGAGCGAGATAGGTC
TAGCAGGCGGTTGAACCAAACACGCTCGCTGACGCCCCCTCCGAGGAGAC
CTGTGCCGCCCCCGAAGCCTGAGCTACCTATGAGGCCCTTCCAATCAGAA
GGCGTGCCCCTGCCGCGTCCGCGAAGCGTTTCCCCTCCGCGAAACATCCT
CCACAGCAGCAGCAGCAGCAGCAGCCTCAGCTCTAACCACGCTCCTTCGG
TCACCGGGAGCTCCCTCTCCGTGCGGATGGAAAGGGCCCCAATCTCTCGC
TCCAACAGCGTCCGCGCCAACGCCCGCCCTCTCCCGCCGCCGCCCAAAAC
CCGCGCGCGTTTTGCCGCACAGCTGGACGTGCCCGTTACCCCCACGGGCC
GCGACGGCAGTTTTTCCTTCGCGGGTGTCACCGCCGTGGAGGAGCCGGAG
CAGGCGGTAGCGGTGGCGGCTGTGCCGGCCAAAGAAGGAAAAAATGAACC
AGCTAGGCCTGTTTCTCCGGGTCCCGTGTCTGCTCGCGAGGTAGCTACAC
AGGCCATAGAGAAGAGGATGCAAGACAGCGGCATGGAAACCGGTGGCGGC
TGCAGCACCAACAGCCGGGCAGTAGACATGCGGGTTATGATCGAAAGGGC
GGAGGAGGAAGAAAGCAGAGTCGAGGCCCTTCCAATCAGAAGGCGTGCCC
CTGCCGCGTCCGCGAAGCGTTTCCCCTCCGCGAAACATCCTCCACAGCAG
CAGCAGCAGCAGCAGCCTCAGCTCTAACCACGCTCCTTCGGTCACCGGGA
GCTCCCTCTCCGTGCGGATGGAAAGGGCCCCAATCTCTCGCTCCAACAGC
GTCCGCGCCAACGCCCGCCCTCTCCCGCCGCCGCCCAAAACCCGCGCGCG
TTTTGCCGCACAGCTGGACGTGCCCGTTACCCCCACGGGCCGCGACGGCA
GTTTTTCCTTCGCGGGTGTCACCGCCGTGGAGGAGCCGGAGCAGGCGGTA
GCGGTGGCGGCTGTGCCGGCCAAAGAAGGAAAAAATGAACCAGCTAGGCC
TGTTTCTCCGGGTCCCGTGTCTGCTCGCGAGGTAGCTACACAGGCCATAG
AGAAGAGGATGCAAGACAGCGGCATGGAAACCGGTGGCGGCTGCAGCACC
AACAGCCGGGCAGTAGACATGCGGGTTATGATCGAAAGGGCGGAGGAGGA
AGAAAGCAGAGTCGAG back to top
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