mRNA_H-paniculata_contig41103.10589.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A6A2ZSD3_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZSD3_HIBSY) HSP 1 Score: 65.9 bits (159), Expect = 4.070e-11 Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
RGFSQQ+ LD+ + F+P ++V++++A+T DW +WQ+DVK AF D E++M
Sbjct: 723 RGFSQQYGLDYDETFSPVAKLTTVRVLLALTANKDWNLWQMDVKNAFLHGELDREIYM 780
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A2K3PAL9_TRIPR (Copia protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PAL9_TRIPR) HSP 1 Score: 64.3 bits (155), Expect = 7.760e-11 Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
+GF Q+H LDF QVFAP +V++V+A+T + W M+Q DVK AF + + EV+MK
Sbjct: 11 KGFLQRHGLDFDQVFAPVARIETVRLVVAMTSDKGWSMYQFDVKSAFLDGSSEEEVYMK 69
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: UPI001893ED1C (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Jatropha curcas TaxID=180498 RepID=UPI001893ED1C) HSP 1 Score: 61.6 bits (148), Expect = 1.500e-10 Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
+G++Q+H +D+ +VFAP +V+M+IA +N W ++QLDVK AF Q +VF++
Sbjct: 82 KGYTQEHGVDYTEVFAPVARMDTVRMIIAFAAQNGWTLYQLDVKSAFLQGELKEDVFVE 140
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A6A3ASL8_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ASL8_HIBSY) HSP 1 Score: 63.9 bits (154), Expect = 1.950e-10 Identity = 23/58 (39.66%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
RGFSQQ+ LD+ ++F+P ++V++++A+ DW +WQ+DVK +F D E++M
Sbjct: 1291 RGFSQQYELDYDEIFSPVAKLTTVRVLLALATNKDWNLWQMDVKNSFLHGKLDREIYM 1348
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A6A3C414_HIBSY (PLAC8 family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C414_HIBSY) HSP 1 Score: 62.0 bits (149), Expect = 9.280e-10 Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 4 GFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
GFSQQ+ LD+ + F+P ++V++++A+ V DW +WQ+DVK F D E++M
Sbjct: 727 GFSQQYGLDYDETFSPVAKLTTVRVLLALAVNKDWNLWQMDVKNTFLHGELDREIYM 783
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: UPI0006AAE13E (uncharacterized protein LOC106349937 n=4 Tax=Brassica napus TaxID=3708 RepID=UPI0006AAE13E) HSP 1 Score: 60.5 bits (145), Expect = 3.250e-9 Identity = 21/59 (35.59%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
RGF+Q + D++ FAP ++++++++ +WG+WQ+DVK AF Q + EV+M+
Sbjct: 978 RGFTQTYGEDYIDTFAPVAKLHTIRIILSIATNLEWGLWQMDVKNAFLQGELEDEVYMQ 1036
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH) HSP 1 Score: 60.5 bits (145), Expect = 3.250e-9 Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
RGF+Q + D+++ FAP +V++V+A+ WG+WQ+DVK AF Q + +V+M
Sbjct: 959 RGFTQTYGSDYMETFAPVAKLHTVRVVLALATNLSWGLWQMDVKNAFLQGELEDDVYM 1016
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: Q9ZQK0_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQK0_ARATH) HSP 1 Score: 60.5 bits (145), Expect = 3.250e-9 Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
RGF+Q + D+L FAP +V++V+++T +W +WQ+DVK AF Q + +V+MK
Sbjct: 959 RGFTQTYGEDYLDTFAPVAKLHTVRVVLSLTTNLEWDLWQMDVKNAFLQGELEEKVYMK 1017
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A1R3H507_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H507_COCAP) HSP 1 Score: 60.1 bits (144), Expect = 4.410e-9 Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
RGF+Q++ +D+ + FAP +SV+ ++AV W ++Q+DVK AF +FD EV+MK
Sbjct: 493 RGFTQEYGIDYEETFAPVAHITSVRTLLAVAAVKRWELFQMDVKNAFLNGDFDEEVYMK 551
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A8D9HD07_BRACM ((field mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9HD07_BRACM) HSP 1 Score: 60.1 bits (144), Expect = 4.440e-9 Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
RGF+Q + D+++ FAP ++++V+++ V WG+WQ+DVK AF Q + EV+M
Sbjct: 1073 RGFTQIYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELEDEVYM 1130 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41103.10589.1 >prot_H-paniculata_contig41103.10589.1 ID=prot_H-paniculata_contig41103.10589.1|Name=mRNA_H-paniculata_contig41103.10589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQAback to top mRNA from alignment at H-paniculata_contig41103:1..177+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41103.10589.1 ID=mRNA_H-paniculata_contig41103.10589.1|Name=mRNA_H-paniculata_contig41103.10589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig41103:1..177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41103:1..177+ >mRNA_H-paniculata_contig41103.10589.1 ID=mRNA_H-paniculata_contig41103.10589.1|Name=mRNA_H-paniculata_contig41103.10589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig41103:1..177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |