mRNA_H-paniculata_contig407.10515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig407.10515.1
Unique NamemRNA_H-paniculata_contig407.10515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 3.260e-113
Identity = 224/524 (42.75%), Postives = 282/524 (53.82%), Query Frame = 1
Query:    1 STVEVSQSRSILLIYFDLVQSGMGANPAIKETARVMRVGTKKVYQVRTCWWDQKLNMTTSGEGQ------DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCRHRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFPRRGGSNLRNRIRVGKGRG*WMKKTSQRCFGRPKLPQWFATLP*PIKCSWSGSKNVWR*LSKLLSETR*FLFSITRRTTTGMTRRSGCLRPKPRSTIQNCC------ANIRLEESLFNGKN---------RTVAVERRL*CAI-LKHQKLD----------------GSQTRTPDVAVVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEGGS*SG-PLLHAVFSPTELFWQHGKQYISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDGGWKPANCVKLVAHAFEEVNKW 1455
            S ++ SQSRSILL YF+LVQSG+  N A++ TA  +RVG  KV++VR  WW++   +T+S EG+      D R +L   Q A  R+FI+ KHE G+QVF RTV EWIK  C   +SNR VG LLYR+GYRRRRGRIK+PPLND RK RI  FLVE   ALT+EE E AVI  MDESFCHQLHGSAYSYF TD+ GV+ DGMGRTSGKG R+IMVHA+TK G LAA D+  FP            + +G   W K   +   G+ +            +  W   +        +  +   F+  + RR       + G    K    + N        A + + ES   G N         R + VER +  +  ++ +K                  G     P+VA  LA R         F L   T L  K+       G      P     F P ELFWQHGKQY+SF++  KR + +VW QVRK  YGD  WEGQ GGWKPA+C KLVAHA +E+NKW
Sbjct:   97 SLLDTSQSRSILLTYFELVQSGVEPNKAVQRTASTLRVGKDKVFKVRAHWWEKTELLTSSAEGRGVSSGKDGRKLLDDVQCANLRAFISDKHENGQQVFRRTVREWIKETCNKDLSNRAVGGLLYRIGYRRRRGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFP------------IPEG---WFKPKDK---GKGRQGAGSMGTEETAEMLWQAKRATGDYHDAMTDKM--FMEWLERRLAPAFKAKYG--NKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSAGVRSKKYTFQVPATGTFPQANSKCGKGVSGPEVA--LATRA-------FFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPTWEGQKGGWKPADCSKLVAHAVKEMNKW 589          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 6.860e-86
Identity = 141/232 (60.78%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    1 STVEVSQSRSILLIYFDLVQSGMGANPAIKETARVMRVGTKKVYQVRTCWWDQKLNMTTSGEGQ------DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCRHRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFP 678
            S +++SQSRSILL YF+LVQSG+  N A++ TA  +RVG  KV++VR  WW++   + +S EG+      D R +L   Q A  R+FI+ KHE G+QVF RTV EWIK +C   +SNR VG LLYR+GYRRR GRIK+PPLND RK RI  FLVE   ALT+EE E AVI  MDESFCHQLHGSAYSYF TD++GV+ DGMGRTSGKG R+IMVHA+TK G LAA D+  FP
Sbjct:   97 SLLDISQSRSILLTYFELVQSGVEPNKAVQRTAATLRVGKDKVFKVRAHWWEKTELLASSAEGRGVSSGKDGRKLLDDVQCASLRAFISDKHENGQQVFRRTVREWIKERCNKDLSNRAVGGLLYRIGYRRRGGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDNGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFP 328          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 2.770e-83
Identity = 191/518 (36.87%), Postives = 260/518 (50.19%), Query Frame = 1
Query:   19 QSRSILLIYFDLVQSGMGANPAIKETARVMRVGTKKVYQVRTCWWD--QKLNMTTSGEGQ-----DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCR-HRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFPRRGGSNLRNRIRVGKGRG*WMKKTSQRCFGRPKLPQ-------WFATLP*PIKCSWSGSKNVWR*LSKLLSETR*FLFSITRRTTTGMTRRSGCLRPKPRSTIQNCCANIRLEESLFNGKNRTVAVERRL*CAILKHQKLDGSQ--------------------TRTPDVA---VVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEGGS*SG-PLLHAVFSPTELFWQHGKQYISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDGGWKPANCVKLVAHAFEEVNKW 1455
            QSR +L++ FDL + G   N A+ + AR  ++G  KV ++   WWD  Q    T +G G+     D R  L++ Q  + R FIN +H+ G+QVF RTV EW+   C   + SNR VG LL R+GY+RRRGRIK PPLN  R  RI  FLVE   A   E+A  AVI  MDESF HQ HGS YSYF +DE+GV+ DG+GRT+GKG R+IMVHA+TK GPLA   D GFP          I  G     W K+T     G+ K+         W A L    K  +  +         +  E      S           +   L     S      A +++ E+  N K   V + R+     ++ ++ +G Q                     R   V+   V  A R           L++   L  ++    + +G +    P     F P ELFWQHGKQY+S ++++KR +++VW Q+R+  YGDK+W GQ+GGWK ANC KLV HA  E+NKW
Sbjct:  137 QSRMVLMLLFDLRKEGRSENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKMAKEDDGRRRLTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNMEQPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKFCD-GFP----------IEEG-----WFKETGS---GKKKMEDEETAEFLWQAKL---AKGDYHAAMT-----DSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPET--NTKKHNVDLLRKFGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATRE-------YIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKW 618          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 7.060e-83
Identity = 187/519 (36.03%), Postives = 262/519 (50.48%), Query Frame = 1
Query:   13 VSQSRSILLIYFDLVQSGMGANPAIKETARVMRVGTKKVYQVRTCWWDQKLNMTTSGEGQ-------DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCRHRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFPRRGG-----SNLRNRIRVGKGRG*WMKKTSQRCFGRPKLP--------------QWFATLP*PIKCSWSGSKNVWR*LSKL-----LSETR*FLFSITRRTTTGMTRRSGCLRPKPRSTIQNCCANIRLEE----SLFNGKNRTVAVERRL*CAILKHQKLDGSQTRTPDVAVVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEG-GS*SGPLLHAVFSPTELFWQHGKQY--ISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDGGWKPANCVKLVAHAFEEVNKW 1455
            + QSR IL++YFDLV+ G   N A ++ A+ +R+GT KV  VRT W+D++    T+G+G+       D R V++K Q    R FI  +HE G+QVF RTV ++++      +SNR VG LL R+G++RRRGRIK+PPLN+ RK RI LFLV+   A   E+A  AVI  MDESF HQ HGSAYSYF +D+ G++ DG+GRT+GKG R+IMVHA+T+ GPLA   + GFP R G      N   +I+ G+       + +     + KL               QW      P   +   +K ++  L          E      + +++    + R+ GC   K     +   A    E     SL N     V+ E               S TRT                   F  +F   L  K     R +G G    P     F P ELFWQHGK Y  +S  ++  R +  VW+++R   YGD +W+GQ+ GWK ANC KLV HA  ++++W
Sbjct:  101 LQQSRIILMLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGIAVIVYMDESFVHQAHGSAYSYFPSDDKGIVQDGIGRTTGKGLRMIMVHAITEHGPLAELQE-GFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEVPAQGSLPNANRNGVSKEE------------IASVTRT------------------YFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYHYVSIHFEKGRNVLDVWKKIRLGWYGDPEWDGQERGWKAANCGKLVQHAIGKMDEW 588          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 2.370e-78
Identity = 187/518 (36.10%), Postives = 254/518 (49.03%), Query Frame = 1
Query:   19 QSRSILLIYFDLVQSGMGANPAIKETARVMRVGTKKVYQVRTCWWD--QKLNMTTSGEGQ-----DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCR-HRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFPRRGGSNLRNRIRVGKGRG*WMKKTSQRCFGRPKLPQ-------WFATLP*PIKCSWSGSKNVWR*LSKLLSETR*FLFSITRRTTTGMTRRSGCLRPKPRSTIQNCCANIRLEESLFNGKNRTVAVERRL*CAILKHQKLDGSQ--------------------TRTPDVA---VVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEGGS*SG-PLLHAVFSPTELFWQHGKQYISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDGGWKPANCVKLVAHAFEEVNKW 1455
            +SR +L++ FDL + G     A+ + AR  ++G  KV ++   WWD  Q   +T  G G+     D R  L++ Q  + R FIN +H+ G+QVF RTV EW+   C   + SNR  G LL R+GY+RRRGRIK PPLN  R  RI  FLVE   A   E+A  AVI  MDESF HQ HGS YSYF +DE GV+ DG+GRT+GKG R+IMVHA+TK GPLA   D G P          I  G     W K+T     G+ ++         W A L    K  +  +         +  E      S           +   L     S      A +++ E+  N K   V + R      ++ ++ +G Q                     R   V+   V  A R           L+    L  ++    R +G +    P     F P ELFWQHGKQY+S ++++KR +++VW Q+RK  YGDK+W GQ+GGWK A+C KLV HA  E+NKW
Sbjct:  103 ESRMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYEITAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLP----------IEEG-----WFKETGS---GKKEMEDEETAEFLWQAKL---AKGDYHAAMT-----DSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPET--NTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATRE-------YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKW 584          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 2.890e-77
Identity = 175/490 (35.71%), Postives = 243/490 (49.59%), Query Frame = 1
Query:   91 ETARVMRVGTKKVYQVRTCWWDQKLNMTTSGEGQ-------DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCRHRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFPRRGG-----SNLRNRIRVGKGRG*WMKKTSQRCFGRPKLP--------------QWFATLP*PIKCSWSGSKNVWR*LSKL-----LSETR*FLFSITRRTTTGMTRRSGCLRPKPRSTIQNCCANIRLE---ESLFNGKNRTVAVERRL*CAILKHQKLDGSQTRTPDVAVVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEG-GS*SGPLLHAVFSPTELFWQHGKQYISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDGGWKPANCVKLVAHAFEEVNKW 1455
            + A  +R+GT  V  VRT W+D++    T+G+G+       D R V++K Q    R FI  +HE G+QVF RTV ++++      +SNR VG LL R+G++RRRGRIK+PPLN+ RK RI LFLV+   A   E+A  AVI  +DESF HQ HGSAYSYF +D+ GV+ DG+GRT+GKG R+IMVHA+TK GPLA   + GFP R G      N   +I+ G+       + +     + KL               QW      P   +   +K ++  L          E      + +++    + R+ GC   K     +   A    E   +      NR   V +          +   S TRT                   F  +F   L  K     R +G G    P     F P ELFWQHGK Y+S  ++  R I  VW+Q+R   YGD +W+GQ+GGWK ANC KLV HA  ++++W
Sbjct:    6 QVATTLRIGTDNVLAVRTLWYDKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYIDESFVHQAHGSAYSYFPSDDTGVVQDGIGRTTGKGLRMIMVHAITKHGPLAELQE-GFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEVPAQGSLPNANRKNGVSK----------EEIASVTRT------------------YFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNILDVWKQIRLGWYGDPEWDGQEGGWKAANCGKLVQHAIGKMDEW 466          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 5.160e-74
Identity = 181/494 (36.64%), Postives = 237/494 (47.98%), Query Frame = 1
Query:   91 ETARVMRVGTKKVYQVRTCWWD--QKLNMTTSGEGQ-----DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCR-HRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFPRRGGSNLRNRIRVGKGRG*WMKKTSQRCFGRPKLPQ-------WFATLP*PIKCSWSGSKNVWR*LSKLLSETR*FLFSITRRTTTGMTRRSGCLRPKPRSTIQNCCANIRLEESLFNGKNRTVAVERRL*CAILKHQKLDGSQ--------------------TRTPDVA---VVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEGGS*SG-PLLHAVFSPTELFWQHGKQYISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDGGWKPANCVKLVAHAFEEVNKW 1455
            + AR  ++G  KV ++   WWD  Q    T  G G+     D R  L++ Q  + R FIN +H+ G+QVF RTV EW+   C   + SNR  G LL R+GY+RRRGRIK PPLN  R  RI  FLVE   A   E+A  AVI  MDESF HQ HGS YSYF +DE GV+ DG+GRT+GKG R+IMVHA+TK GPLA   D G P          I  G     W K+T     G+ ++         W A L    K  +  +         +  E      S           +   L     S      A +++ ES  N K   V + R      ++ ++ +G Q                     R   V+   V  A R           L+    L  ++    R +G +    P     F P ELFWQHGKQY+S  +++KR +++VW Q+RK  YGDK W GQ+GGWK ANC KLV HA  E+NKW
Sbjct:   10 QVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLP----------IEEG-----WFKETGS---GKKEMEDEETAEFLWQAKL---AKGDYHAAMT-----DSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPES--NTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATRE-------YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKAANCSKLVDHAIGEMNKW 467          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 1.450e-73
Identity = 172/480 (35.83%), Postives = 237/480 (49.38%), Query Frame = 1
Query:  115 GTKKVYQVRTCWWDQKLNMTTSGEGQ-------DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCRHRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFPRRGG-----SNLRNRIRVGKGRG*WMKKTSQRCFGRPKLP--------------QWFATLP*PIKCSWSGSKNVWR*LSKL-----LSETR*FLFSITRRTTTGMTRRSGCLRPKPRSTIQNCCANIRLE---ESLFNGKNRTVAVERRL*CAILKHQKLDGSQTRTPDVAVVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEG-GS*SGPLLHAVFSPTELFWQHGKQYISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDGGWKPANCVKLVAHAFEEVN 1449
            GT KV  VRT W+D++    T+G+G+       D R V+++ Q    R FI  +HE G+QVF RTV ++++      +SNR VG LL R+G++RRRGRIK+PPLN+ RK RI LFLV+   A   E+A  AVI  MDESF HQ HGSAYSYF +D+ GV+ DG+GRT+GKG R+IMVHA+TK GPLA   + GFP R G      N   +I+ G+       + +     + KL               QW      P   +   +K ++  L          E      + +++    + R+ GC   K     +   A    E   +      NR   V +          +   S TRT                   F  +F   L  K     R +G G    P     F P ELFWQHGK Y+S  ++  R +  VW+Q+R   YGD +W+GQ+GGWK ANC KLV HA  +++
Sbjct:   58 GTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITQEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKGAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDTGVVQDGIGRTTGKGLRMIMVHAITKHGPLAELQE-GFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEVPAQGSLPNANRKNGVSK----------EEIASVTRT------------------YFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPEWDGQEGGWKAANCGKLVQHAIGKMD 508          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 2.990e-69
Identity = 177/494 (35.83%), Postives = 238/494 (48.18%), Query Frame = 1
Query:   91 ETARVMRVGTKKVYQVRTCWWD--QKLNMTTSGEGQ-----DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCR-HRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARDDTGFPRRGGSNLRNRIRVGKGRG*WMKKTSQRCFGRPKLPQ-------WFATLP*PIKCSWSGSKNVWR*LSKLLSETR*FLFSITRRTTTGMTRRSGCLRPKPRSTIQNCCANIRLEESLFNGKNRTVAVERRL*CAILKHQKLDGSQ--------------------TRTPDVA---VVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEGGS*SG-PLLHAVFSPTELFWQHGKQYISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDGGWKPANCVKLVAHAFEEVNKW 1455
            + AR  ++G  KV ++   WWD  Q    T  G G+     D R  L++ Q  + R FIN +H+ G+QVF RTV EW+   C   + SNR  G LL R+GY+RRRGRIK PPLN  R  RI  FLV    A   E+A  AVI  MDESF HQ HGS YSYF +DE GV+ DG+GRT+GKG R+IMVHA+TK GPLA   D G P          I  G     W K+T     G+ ++         W A L    K  +  +         +  E      S           +   L     S      + +++ E+  N K   V + R      ++ ++ +G Q                     R   V+   V  A R           L+    L  ++    R +G +    P     F P ELFWQHGKQY+S ++++KR +++VW Q+RK  YGDK+W GQ+GGWK A+C KLV HA  E+NKW
Sbjct:  138 QVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLV-MNMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLP----------IEEG-----WFKETGS---GKKEMEDEETAEFLWQAKL---AKGDYHAAMT-----DSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPET--NTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATRE-------YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKW 594          
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 2.970e-60
Identity = 161/484 (33.26%), Postives = 226/484 (46.69%), Query Frame = 1
Query:   31 ILLIYFDLVQSGMGANPAIKETARVMRVGTKKVYQVRTCWWD--QKLNMTTSGEGQ-----DARAVLSKPQVAEFRSFINAKHEEGKQVFGRTVGEWIKAKCR-HRISNRGVGVLLYRVGYRRRRGRIKVPPLNDGRKTRI*LFLVEFYGALTKEEAETAVIACMDESFCHQLHGSAYSYFFTDEHGVLPDGMGRTSGKGQRLIMVHAVTKEGPLAARD-----DTGFPRRGGSNLRNRIRVGKGRG*WMKKTSQRCFGRPKLPQWFAT-LP*PIKCSWSGSKNVWR*LSKLLSETR*FLFSI----------TRRTTTGMTRRSGC--LRPKPRSTIQNCCA-NIRLEE---SLFNGKNRTVAVERRL*CAILKHQKLDGSQTRTPDVAVVLAVRR*RCLLELSFSLDFSTNLWRKLRCSWRSEGGS*SGPLLHAVFSPTELFWQHGKQYISFDYDMKRIIKQVWEQVRKRCYGDKKWEGQDG 1392
            +L++ FDL + G   N A+ + AR  ++G  KV ++   WWD  Q    T  G G+     D R  L++ Q  + R FIN +H+ G+QVF RTV EW+   C   + SNR    LL R+GY+ RRGRIK PPLN  R  RI  FLVE   A   E+A  AVI  +D SF HQ HGS YSYF  DE  V+ DG+GRT+GKG R+IMVHA+TK GPLA        + G+ +  GS  R           W  K ++  +        F   L   +  +++           L+ +   +              T++    + R  G   +R K +   Q     N  +     S F   NR   V R    A    + +  +     +  VV  +R+                  + L   W         P     F P ELFWQHGKQY+S ++++KR +++VW Q+RK  YGDK+W GQ+G
Sbjct:    2 VLMLLFDLRKEGRAENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNRSAEGLLSRLGYKGRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYIDGSFVHQAHGSPYSYFPADEDEVVQDGIGRTTGKGLRVIMVHAITKWGPLAKLCVGLPIEEGWFKETGSGKREMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVKRKEGEQGVVEENFEVPTEPGSSFPAGNREGGVSRAE-VATATREYIHLNHPERLEERVVTFMRK------------------KGLALIWT--------PPYMPSFQPIELFWQHGKQYVSVNFELKRKVREVWVQIRKGWYGDKEWPGQEG 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig407.10515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI3.260e-11342.75Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KZM0_9PHAE6.860e-8660.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM6_ECTSI2.770e-8336.87DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KDX2_9PHAE7.060e-8336.03Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIM5_9PHAE2.370e-7836.10DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KCN2_9PHAE2.890e-7735.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX7_9PHAE5.160e-7436.64DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KP14_9PHAE1.450e-7335.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR41_9PHAE2.990e-6935.83DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE2.970e-6033.26DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig407contigH-paniculata_contig407:35438..37605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontransposase
Ec32 orthologEc-15_001220.1
Exons2
Model size1613
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig407.10515.1prot_H-paniculata_contig407.10515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig407 35765..36316 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.403679-UTR-H-paniculata_contig407:35437..357641622930245.403679-UTR-H-paniculata_contig407:35437..35764Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 35438..35764 -
1691481208.1504412-UTR-H-paniculata_contig407:35437..357641691481208.1504412-UTR-H-paniculata_contig407:35437..35764Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 35438..35764 -
1622930245.4291961-UTR-H-paniculata_contig407:36316..369151622930245.4291961-UTR-H-paniculata_contig407:36316..36915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 36317..36915 -
1691481208.1746051-UTR-H-paniculata_contig407:36316..369151691481208.1746051-UTR-H-paniculata_contig407:36316..36915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 36317..36915 -
1622930245.44127-UTR-H-paniculata_contig407:37470..376051622930245.44127-UTR-H-paniculata_contig407:37470..37605Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 37471..37605 -
1691481208.185389-UTR-H-paniculata_contig407:37470..376051691481208.185389-UTR-H-paniculata_contig407:37470..37605Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 37471..37605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.416111-CDS-H-paniculata_contig407:35764..363161622930245.416111-CDS-H-paniculata_contig407:35764..36316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 35765..36316 -
1691481208.158965-CDS-H-paniculata_contig407:35764..363161691481208.158965-CDS-H-paniculata_contig407:35764..36316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 35765..36316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig407.10515.1

>prot_H-paniculata_contig407.10515.1 ID=prot_H-paniculata_contig407.10515.1|Name=mRNA_H-paniculata_contig407.10515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MDEKDIAEMLWQAKIATVVCHAAMTDKMFMEWLEKRLALTFKAAFGNKMI
FVLDNASYYHGYDAEVGVPETKTKKYNTELLRKHKAGRITVQREEPDGSG
GKKVVMRNFEAPETGRFPNSNSRCGGGVSSAKVALPTRAFFQLRFLHKLM
EEVEVFMEKRGWQLIWTPLTCRLFADRAVLATW*
back to top

mRNA from alignment at H-paniculata_contig407:35438..37605-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig407.10515.1 ID=mRNA_H-paniculata_contig407.10515.1|Name=mRNA_H-paniculata_contig407.10515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2168bp|location=Sequence derived from alignment at H-paniculata_contig407:35438..37605- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCACTGTTGAGGTCTCACAGTCTCGGTCCATCCTTCTGATTTACTTTGA TCTCGTCCAGTCAGGCATGGGCGCAAACCCGGCTATCAAGGAGACCGCGA GAGTAATGCGGGTCGGCACGAAGAAGGTTTATCAGGTATGTATCTTTGTT CTATACAGATAATACAGTATGAATATTTTGAATACACTCTTTCGGAACAG TTTTACATACTTTATCCCAGTGTTTTTGGCACTGTACAAGCAATACGATA CCGCCTCTCCTTGCGTGTGTTAAAAATCACCATGTTACTGTGTAGTTATT TTAGCTGACAATTTTCAAATGATTAATAATGCGTCCACGGTAAGATGTCT GTATCTCTGCCTTCTGAACCGTTTCACCGCGTCTGTTATGCAAAGTGTAG GCTCATCTGCACTCTCTGTAGACAGAGAGTACTGCTTGTTGGTGCTGACC TCATCACAAAATGCTGACCCCTTTTATCCTTAAGTTTGAGCGCCCGCTGT ACCTGAAGTGTGCTGAAGTCTTCGTACCCTCTTCGAGTGCGAGTGCTCGT TGTATGTACTGACCGTTTCTCCAAAGTGCTGACGCTTGTGTACAACTAAG TGTTTGCAACCTCTTCTCAAATATCGTAAATGGTCGCAACGTCAACTTTG ATTGTGATTTTCACACTGCATTCTCATATTACGCGAACAGGTCCGCACTT GTTGGTGGGATCAGAAGTTGAACATGACAACATCAGGCGAAGGACAAGAC GCGCGGGCGGTCCTCTCCAAGCCGCAAGTAGCTGAGTTTCGCTCCTTCAT CAACGCTAAACATGAGGAGGGGAAACAAGTTTTCGGGCGGACGGTGGGCG AATGGATCAAGGCCAAATGTCGCCATCGCATTTCGAACCGCGGGGTAGGA GTACTGCTGTATAGGGTTGGCTATAGACGCCGCCGTGGACGGATCAAAGT ACCCCCTCTCAACGACGGGAGGAAAACGCGTATTTGACTATTTCTCGTCG AGTTTTATGGTGCTCTTACAAAAGAGGAGGCAGAAACGGCAGTTATAGCG TGCATGGATGAGAGTTTCTGCCACCAGTTGCATGGTTCTGCATACTCGTA CTTTTTCACGGATGAGCATGGGGTACTACCGGACGGGATGGGTCGTACCT CGGGCAAGGGTCAGCGATTAATCATGGTTCACGCAGTCACTAAGGAAGGC CCGTTGGCAGCTCGTGATGATACCGGATTTCCCAGGAGAGGTGGTTCAAA CCTAAGAAATCGGATAAGGGTAGGCAAAGGAAGGGGCTGATGGATGAAAA AGACATCGCAGAGATGCTTTGGCAGGCCAAAATTGCCACAGTGGTTTGCC ACGCTGCCATGACCGATAAAATGTTCATGGAGTGGCTCGAAAAACGTCTG GCGCTGACTTTCAAAGCTGCTTTCGGAAACAAGATGATTTTTGTTCTCGA TAACGCGTCGTACTACCACGGGTATGACGCGGAGGTCGGGGTGCCTGAGA CCAAAACCAAGAAGTACAATACAGAACTGTTGCGCAAACATAAGGCTGGA AGAATCACTGTTCAACGGGAAGAACCGGACGGTAGCGGTGGAAAGAAGGT TGTGATGCGCAATTTTGAAGCACCAGAAACTGGACGGTTCCCAAACTCGA ACTCCCGATGTGGCGGTGGTGTTAGCAGTGCGAAGGTAGCGTTGCCTACT CGAGCTTTCTTTCAGCTTAGATTTCTCCACAAACTTATGGAGGAAGTTGA GGTGTTCATGGAGAAGCGAGGGTGGCAGCTGATCTGGACCCCTCTTACAT GCCGTCTTTTCGCCGACCGAGCTGTTTTGGCAACATGGTAAGCAGTATAT TAGCTTCGACTACGATATGAAGCGTATCATAAAACAAGTGTGGGAGCAGG TTCGGAAGCGTTGTTATGGGGATAAGAAATGGGAAGGGCAAGACGGTGGG TGGAAACCGGCAAACTGTGTCAAACTTGTTGCGCACGCCTTTGAAGAGGT GAATAAGTGGTAAGTACCGACGACGTACTGGGCAGTACCGTGAAAGCCCT CCTCGTAACGGACGATTACAATTATGGTGCCCCCGGGTTCAAGGCTGTAG TGGAGAATGAAACGGTGGAGCTTCAGGAGGCATTTGATAATTCTGCCAAA TTTGCGGAGTGTATGGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig407:35438..37605-

>mRNA_H-paniculata_contig407.10515.1 ID=mRNA_H-paniculata_contig407.10515.1|Name=mRNA_H-paniculata_contig407.10515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig407:35438..37605- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAAAAAGACATCGCAGAGATGCTTTGGCAGGCCAAAATTGCCAC
AGTGGTTTGCCACGCTGCCATGACCGATAAAATGTTCATGGAGTGGCTCG
AAAAACGTCTGGCGCTGACTTTCAAAGCTGCTTTCGGAAACAAGATGATT
TTTGTTCTCGATAACGCGTCGTACTACCACGGGTATGACGCGGAGGTCGG
GGTGCCTGAGACCAAAACCAAGAAGTACAATACAGAACTGTTGCGCAAAC
ATAAGGCTGGAAGAATCACTGTTCAACGGGAAGAACCGGACGGTAGCGGT
GGAAAGAAGGTTGTGATGCGCAATTTTGAAGCACCAGAAACTGGACGGTT
CCCAAACTCGAACTCCCGATGTGGCGGTGGTGTTAGCAGTGCGAAGGTAG
CGTTGCCTACTCGAGCTTTCTTTCAGCTTAGATTTCTCCACAAACTTATG
GAGGAAGTTGAGGTGTTCATGGAGAAGCGAGGGTGGCAGCTGATCTGGAC
CCCTCTTACATGCCGTCTTTTCGCCGACCGAGCTGTTTTGGCAACATGGT
AAATGGATGAAAAAGACATCGCAGAGATGCTTTGGCAGGCCAAAATTGCC
ACAGTGGTTTGCCACGCTGCCATGACCGATAAAATGTTCATGGAGTGGCT
CGAAAAACGTCTGGCGCTGACTTTCAAAGCTGCTTTCGGAAACAAGATGA
TTTTTGTTCTCGATAACGCGTCGTACTACCACGGGTATGACGCGGAGGTC
GGGGTGCCTGAGACCAAAACCAAGAAGTACAATACAGAACTGTTGCGCAA
ACATAAGGCTGGAAGAATCACTGTTCAACGGGAAGAACCGGACGGTAGCG
GTGGAAAGAAGGTTGTGATGCGCAATTTTGAAGCACCAGAAACTGGACGG
TTCCCAAACTCGAACTCCCGATGTGGCGGTGGTGTTAGCAGTGCGAAGGT
AGCGTTGCCTACTCGAGCTTTCTTTCAGCTTAGATTTCTCCACAAACTTA
TGGAGGAAGTTGAGGTGTTCATGGAGAAGCGAGGGTGGCAGCTGATCTGG
ACCCCTCTTACATGCCGTCTTTTCGCCGACCGAGCTGTTTTGGCAACATG
GTAA
back to top