mRNA_H-paniculata_contig4055.10486.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4055.10486.1
Unique NamemRNA_H-paniculata_contig4055.10486.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4055.10486.1 vs. uniprot
Match: D7FJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 9.330e-18
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  262 AVVQAHRCALLAEDASRQGDLGLATNLHLTAAKAFLRAAEQMQEHGVLASSLLLLADSHAAQAEEATARLR 474
            A  +AHRCA  AEDA R+GD   AT LHL AA+ FLRAAEQ+QEHGVLASSLLLLADSHAA+AE+   RLR
Sbjct:   11 ASTKAHRCAQGAEDACRKGDHAEATELHLAAARDFLRAAEQVQEHGVLASSLLLLADSHAARAEKGAIRLR 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4055.10486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJW1_ECTSI9.330e-1871.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4055contigH-paniculata_contig4055:9884..15078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size477
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4055.10486.1prot_H-paniculata_contig4055.10486.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4055 9959..15078 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930241.3306968-UTR-H-paniculata_contig4055:9883..99581622930241.3306968-UTR-H-paniculata_contig4055:9883..9958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4055 9884..9958 +
1691481206.27465-UTR-H-paniculata_contig4055:9883..99581691481206.27465-UTR-H-paniculata_contig4055:9883..9958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4055 9884..9958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930241.350716-CDS-H-paniculata_contig4055:9958..101561622930241.350716-CDS-H-paniculata_contig4055:9958..10156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4055 9959..10156 +
1691481206.282734-CDS-H-paniculata_contig4055:9958..101561691481206.282734-CDS-H-paniculata_contig4055:9958..10156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4055 9959..10156 +
1622930241.370941-CDS-H-paniculata_contig4055:13739..138501622930241.370941-CDS-H-paniculata_contig4055:13739..13850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4055 13740..13850 +
1691481206.290329-CDS-H-paniculata_contig4055:13739..138501691481206.290329-CDS-H-paniculata_contig4055:13739..13850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4055 13740..13850 +
1622930241.3856778-CDS-H-paniculata_contig4055:14985..150781622930241.3856778-CDS-H-paniculata_contig4055:14985..15078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4055 14986..15078 +
1691481206.298308-CDS-H-paniculata_contig4055:14985..150781691481206.298308-CDS-H-paniculata_contig4055:14985..15078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4055 14986..15078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4055.10486.1

>prot_H-paniculata_contig4055.10486.1 ID=prot_H-paniculata_contig4055.10486.1|Name=mRNA_H-paniculata_contig4055.10486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MTELSDLPFASMSASDSNGALEQSFSLRMKGGGRKKGAASYPDVTATGRS
AIRAGWGLEEGSAVVQAHRCALLAEDASRQGDLGLATNLHLTAAKAFLRA
AEQMQEHGVLASSLLLLADSHAAQAEEATARLR*
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mRNA from alignment at H-paniculata_contig4055:9884..15078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4055.10486.1 ID=mRNA_H-paniculata_contig4055.10486.1|Name=mRNA_H-paniculata_contig4055.10486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5195bp|location=Sequence derived from alignment at H-paniculata_contig4055:9884..15078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAACACAAAGACACCTCAACCCGACTGTACTGTCTGAAGGCACAGACT
GTAGTGTAATCAAGCCTAAGGGGCCATGACCGAACTTAGCGATCTCCCCT
TTGCCTCGATGTCGGCTTCGGATTCAAACGGGGCCCTGGAACAAAGCTTC
TCGCTCAGGATGAAAGGCGGGGGAAGGAAGAAGGGAGCAGCGAGCTACCC
AGATGTTACTGCTACGGGGCGCTCGGCTATCAGAGCAGGTTGGGGGTTGG
AGGAAGGGAGCGCTGTCGTTCAGGTAACATACTTTAGATCAGGTAGCCAT
AGCCTACCCGTCGCAGAGTCGGAAGTGATGTGGGGAGAATATTACAGAGA
AATCGGTGAGCTATGGTAGAGTTGGGTGTGTGTCGTGGTGTTGGCGATGT
TGAACATCAGGAACGTTTCTTGGCTGATTAGTCTCGAATACCTTCGAAAA
AACATAAAATGGTCGTCGAAAGTTGCTCCTTCCTTCATCGGAGATCATTG
AACATTGATTGCTACATTACGGCCGCTCTAGTGGTCACAGTGTAGTACAA
TGCATTACAACTGTGTCGGCACAATCGTACATAGCACAGTCCCGTCTGTT
CTACATTGTTTTACTCAGTAGGGCCACGCAAACTAAATGCGCGCCAGACG
ACGAGAAGACAAGGACGGCAACGCTCTTTCCCCGACACAATTGCCCAGTT
CCTGGTAAGCCTCGATGATTGGCGGGCCGGTGGTGAAAACGTCCCCATGA
AGTTCCCCTTACTGTAACAAACCATAACTGACCGTAAACCACTCAAGCAG
TATAGTTTTGGGATGAAACAACCCGACAGGCAAGGACTGTCCTAATTTTT
CTGAAGTATCGAATGCAAGCTTGCAGCAGGGTTTGCGCACAGGTGCACGT
AGCGCTTGCAGAACCACTGAGGGAGTCGTTCCCATTGCGATGCGAAGAGA
AGCGTAGCTCTGCCAAAATGCGGTGCGATAGTTGAACGGTGGCATCGCCC
TTACGCCTGCCTCACTGCTACGATATCCAGCACAAAACAGCGAGTGAAAT
CTGACGACTGTAACTGAACTGCAGTATGTGGCGTGTAAACGCACGATGTC
CCTTTGACCCCAACTCATGGCATGTACATGTACTCCTTCCTCCTCTGGGC
GCTATGGCACCTGGCCGTGTACAATCCATACACAATCATTCAATCAATTT
ACACCACACCATGACTCTGATGGCGCTTTGCTATGCCTGTAGACGGTACA
GATAGTGCAGACAGCAAAATGCTGGAAGCTTTATCGCACACTGCGCAAGT
GTCGTTTTTAATGAAAGCATCGGCCGCAGCCACGGTTGCAGGGCAATCAA
TCAGTGCTCCCATTGCTCTCTTCCGTTACTCGATGTCGATACTACGCGTT
TGTTGCGCCCACGGACAGCAACCAGACCAAGCGGACGTCACCCAAAAAAC
ACAGCGGCCCAAAACTGAAATGAAGAAGTGTGCACGTTTTGCTCATATCC
CCTTAGCCGGTCGAGGGATTGTGTAGGGATCCTGTCATCCAAAACTACTC
GAGTGATGTACAGGAGACGACACGTTTTTGATTCCGCGTTGGGTGAACAA
ACGTGCACGATTGGCCTGCCCCTACATTTTTCGTTTACAATCTACGGTCA
TGGTCCAGCACTGCGAGGTCTGATAGAATCAGAACAACTGCAAGTTAACC
TCGAAGTATTGTCAACATGTATATCGTGTTGTATTGCTTGTTCCGCAACG
GCCTCTTTAACCCCGATGGCACCCGAGCGTGAAAAAACCAACAAAGGCAC
CTGACAGTCCGGCGGCGAAACGGCCGCGAAAAGGGGGTGGGGGGAAGGCG
AAGGCCATTTTTTTTACGACGGAGGAATTGTTAGTTCCGACCTCAAGTTA
ACGATGTTATGCTCTGGTTCGAATATACCCACATGTGTGCCCGCTGTCAA
TCAATCCGCAGAATAACACACCGATTACGCGCAGGCGAGTATAAACTTTG
GGTTATCCCAGAAATTGCGAAAACCGGTTAGACGATAGATACTTGCAGGT
TAGTTACCTTGAACTTGCAATTGTGATTCTCTATCCGACGTAAACTGATT
AGCGTTATGCCATCATTTTTGTACATGTTGAGCTCTGAAGTCGATTGGTG
CGGAACCGTGCCAACTTACGTGTCTATGTTGCATGCTCTGTATGTTGCTG
GACTGACTGCCTGGAAGGCGGCGCCCCCCTGTGCGCCGTGATCATGTCAT
TAAATAGGCATGACGTGAAGACCGGCGACCAATGCGCTAAATACTACACG
AATGATCTACGCACCCTTGACGTCTGTACAAAATCCCCTGTAGGATTTCT
TGGTAGGGCCCACTCGTTCCATCAGGGTACGCCCCCAGCCCTCACAACCG
TAGTCGCACCGTTGTCGGGTACGGTTATCGAGTTCACGGCTGGTCTGACC
CATTACACAGCTATTTATCCAGCACGGACCCAATGGTTGGGAGAAGCTCT
CATTCCGGGTGCGGCTGATGACCTTTTGGCGCAAGTATATTTTCTATTTT
ATATAGGAATTAGTATATGGCCACAAGTAGGTTCAAGCCCCTTGTCTTCC
GCCGGATTTCTTCCGAGTAGTAGCTAAAAGTAAGTCTGAATTTACTATCG
GATTATTTTCTTTTAGTCAGCGGGCTGCTACTGTATTCAGTATTTAACCG
CTAATGCATTAGTTTTTTGGAATCTCTGCGTATAGGAGAAATAGTTCATT
GTACTGAAGTGAAAAAAAAAAAGCACAAATAAGACTACCAATGGATCATG
ACCAAGTAGAACCATAGGGTTTGAAAAATATAGACAGTTATAATGCCACT
ACCCGTGGACAAAACAGATGTGTACACACAACCCCCTACTCGAGTGAGCG
AGCGAGGAGACTCACGAAGGCTTTCCCCTCTTGGGGTTCCACGAAACGAT
GGAAACGTTCCGTATTTGTAGATTTGGTCCAAATGATGGGCGATGCTAGT
TTTCGAAGACGACAAACGCACCCAAGCTCGCTCAACCATTGCTTTGCTGA
CAGACGGAGCGGCGGGGGCGGGGGGTGCACTGGTTCTTATGGTGGTGCTG
TAGCTCATGTTGCGTCGATCTACACTGGGTGTGTTTGATAGCCACCAAAA
AATAACCTGTTGGCGGTAAAACCTTAAACTGTCGATAAGAGAAAGTTGAC
GAAACCTCCAGTAAGAGTCGCAAGCAAACACATGTATGTATGTGTACTTC
ATGTATCACATATTTTGGAGACAATGCACACTACCGTAGTCATGAGCTCA
CAGTAAAGCCCCTCCACCTTCCCCGCACGCCCTTTGGAGTCATTGCCCAA
ACGGATTAGCTCCTTCCGAAAAAAACGACGGGGCAAAACGAGAAAATACT
GTGATATTTTGGGTGTTTTTGGACCTATTTTGTAGCACAGCGATTCACTC
TGCCCTGTCGACGGTATTTCTCTCGTGAGTCGTGCTCTATGTAGGGAAAT
GGACACCCCTCTACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGAAG
TGAGCATGACTGGAAGTCTAATCAGAGGTCTTTTAGTGGATGCAACCCCC
CACACTGCCTGCTTGGTTCGGCCGAACTGGGGTGACGCCTACCCCGAAGA
GGAACAAATAAATCTGTTCTGTAAAAGGAAATGTAGGAATACTTGGGTAG
AAATACTTGGGTATGGAAGCATCGGATCAAGGTTTTTTGCCTCAGCCTTC
CGGTGGTTAAACAAAAAAATGGACACCCCTCAACGAGTCTTGGCGCCTGC
TTTCCCCGCACTTTCCCCCCGATGTGGGACAAAATACCTCAATTATTCAT
TTTCAGGCTCACCGCTGTGCCCTTCTAGCAGAGGATGCGTCCCGCCAGGG
CGATTTGGGGTTGGCGACAAACCTGCACCTGACAGCTGCGAAGGCATTTC
TGCGAGCTGCCGAGCAGGTTAGTGCGGTTGCACTAGTTTTTGCGTGCAAC
CTCTTTCTCGCGTCGATATATTTTTTTAGTGCATACCTCATTCTTTTTTT
TTCACACTGGGTTCTAGTACTGTTGTTCCCACGTGCTACTTTAATGTCAT
ACTCTATTTTTACATTATTACTTGCTGTTCAGTACAGTAGTAATTCCATG
GCTAGATCCCATTCACGCGGCATCCGACAGCCAATTTTTCCCCCGCCAAG
TGTGAGAATTGACGTCCCGTCCTCTTAATGACCCCGTAGATCGATGATAT
ATTTTCTTCCGTGATATTTGATACTCAGAAGGACTGCAGCTATAATATCA
AGTAAGTTAAAGGAAATGTAGAAATACTTGGGTATGGAAGCATCAGATAG
AGGTTTTTGCCTTAGCCTTCCGACAGTTACAAAAAAAAGAAAATCAAGGA
AGCAAGGTGGGCGTGCTCTCGCTGAGGGTTGTTTGCCGCGGTCGCTCTTT
GGGCTACCGGTTGGTTGTTCACGCACCGTCGGGTGGATCGTCCGTCGGTA
CTGTAGCTCAACCGTTTGAAGAATCTACTTTGTAACCATTCGGATCGGAG
ATCTTCAGGTTACGTAATCCTAATGGGATGGTCAGGATTTTGGAGAGGTT
TAATGGATGATGTCGGATCGTTGGTACTAAATCGCATGTACTCTGCGTGA
TCGATCTGGTTGGCCTGTTTGCTGTGCTTTTCATACAAGTTTTTGCTTCG
TTGTTGTGACCTGGTATTTTCGTGCGCCGAGCAATAACATTCTATATTTC
AACTCCAACATTCTGAGGTATGCCACGTACTGGTAATGCTTATGGAGCCT
TGAGAGTAAGCACTGAACAGTTGTTAGGCTGTTGCTTTCTGTTGTAACAA
CGTTTTTTTTGTTTTTTTTTCTTGGTTTTCAAATATTGTACGTCTCATTT
TTCTGTTCTAGGGTGTTTGGTTTGCTCCCCCCCCCGCGGCGGCGGCTGCT
GTTGTTGCGCGTTGTAAAGACTAACCTGTTATCCTCGTATTCATTATTAC
TATGTTGTTGTCATGGTGAGTCAACATCTCATTCTCTGATCTTGGGGCGT
GCTCCCCTCTGCTGCTGCTGCTGTGTGTGGCGTGCGATTGTTGTTGTGAT
AGATGCAGGAACACGGCGTTCTCGCTTCTTCTCTTTTGCTGCTTGCAGAC
TCGCATGCCGCACAGGCAGAGGAAGCAACGGCTCGATTACGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4055:9884..15078+

>mRNA_H-paniculata_contig4055.10486.1 ID=mRNA_H-paniculata_contig4055.10486.1|Name=mRNA_H-paniculata_contig4055.10486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig4055:9884..15078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGAACTTAGCGATCTCCCCTTTGCCTCGATGTCGGCTTCGGATTC
AAACGGGGCCCTGGAACAAAGCTTCTCGCTCAGGATGAAAGGCGGGGGAA
GGAAGAAGGGAGCAGCGAGCTACCCAGATGTTACTGCTACGGGGCGCTCG
GCTATCAGAGCAGGTTGGGGGTTGGAGGAAGGGAGCGCTGTCGTTCAGAT
GACCGAACTTAGCGATCTCCCCTTTGCCTCGATGTCGGCTTCGGATTCAA
ACGGGGCCCTGGAACAAAGCTTCTCGCTCAGGATGAAAGGCGGGGGAAGG
AAGAAGGGAGCAGCGAGCTACCCAGATGTTACTGCTACGGGGCGCTCGGC
TATCAGAGCAGGTTGGGGGTTGGAGGAAGGGAGCGCTGTCGTTCAGGCTC
ACCGCTGTGCCCTTCTAGCAGAGGATGCGTCCCGCCAGGGCGATTTGGGG
TTGGCGACAAACCTGCACCTGACAGCTGCGAAGGCATTTCTGCGAGCTGC
CGAGCAGGCTCACCGCTGTGCCCTTCTAGCAGAGGATGCGTCCCGCCAGG
GCGATTTGGGGTTGGCGACAAACCTGCACCTGACAGCTGCGAAGGCATTT
CTGCGAGCTGCCGAGCAGATGCAGGAACACGGCGTTCTCGCTTCTTCTCT
TTTGCTGCTTGCAGACTCGCATGCCGCACAGGCAGAGGAAGCAACGGCTC
GATTACGGTGAATGCAGGAACACGGCGTTCTCGCTTCTTCTCTTTTGCTG
CTTGCAGACTCGCATGCCGCACAGGCAGAGGAAGCAACGGCTCGATTACG
GTGA
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