mRNA_H-paniculata_contig40526.10481.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40526.10481.1
Unique NamemRNA_H-paniculata_contig40526.10481.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 6.740e-54
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:   25 QGPEKRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEV 339
            QG E+RVLSSDAKT+KIW+R+DG V+TNVETPADIND+C+AHD+RGDSGLL+MA EQSRVLSYY+P LGPAPRWCSFLDVLTEELEEE EASVYEDYKFVT AEV
Sbjct:  304 QGTERRVLSSDAKTVKIWNRDDGAVVTNVETPADINDVCVAHDARGDSGLLLMATEQSRVLSYYVPALGPAPRWCSFLDVLTEELEEEQEASVYEDYKFVTTAEV 408
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: A0A067CRC6_SAPPC (NUC153 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRC6_SAPPC)

HSP 1 Score: 149 bits (376), Expect = 1.070e-39
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:   25 QGPEKRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEV 339
            +GP K+VLSSDAK IKIW + DG++ TN+ET ADIND+C+     G SG+LM+A EQ RV+SYYIP LG AP+WCSFLD LTEELEEE  ++VY+DYKFVT AE+
Sbjct:  265 EGPSKQVLSSDAKCIKIWDKTDGKLFTNLETSADINDVCVVRGGAGMSGVLMVAGEQERVMSYYIPELGIAPKWCSFLDNLTEELEEEASSTVYDDYKFVTRAEL 369
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.130e-39
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:   43 VLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEV 339
            VLSSDAK +K W   DG VL NVE PA++N +C+AHD+RGDSGLLM+A EQ+RV++YYIP LGPAPRWCSFLD LTEELEE   A+VY+DYKFVT  EV
Sbjct:  313 VLSSDAKIVKAWDCADGAVLANVEAPANVNGVCVAHDARGDSGLLMLAGEQARVMAYYIPTLGPAPRWCSFLDSLTEELEEGDAATVYDDYKFVTRDEV 411
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.370e-39
Identity = 70/115 (60.87%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:    1 FGLLRLNLQGPE--KRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEV 339
            +GL  +NLQ  +  ++V+SSDAK IKIW+R DG V TNVETPA++ D+C+   ++G SG+L++A EQ RV+SYYIP LG AP+WCSFLD LTEELEEE +A+VY+DY+FVT AE+
Sbjct:  276 YGLPIVNLQFHDYAQKVISSDAKVIKIWNRRDGAVFTNVETPAEVKDVCVVDGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEI 390
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: G4YXE2_PHYSP (NUC153 domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=G4YXE2_PHYSP)

HSP 1 Score: 149 bits (375), Expect = 1.890e-39
Identity = 71/117 (60.68%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    1 FGLLRLNLQGPE--KRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEVWS 345
            +GL  ++LQ  +  ++V+SSDAK IKIW R DG V TNVETPA++ D+CI   ++G SG+L++A EQ RV+SYYIP LG AP+WCSFLD LTEELEEE +A+VY+DY+FVT AE+ S
Sbjct:  276 YGLPIMDLQFHDYARKVISSDAKVIKIWDRRDGAVFTNVETPAEVKDVCIVEGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIAS 392
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: M4BWD3_HYAAE (NUC153 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWD3_HYAAE)

HSP 1 Score: 149 bits (375), Expect = 1.890e-39
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = 1 
Query:    1 FGLLRLNLQGPE--KRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEVWS 345
            +GL  +NLQ  +  ++V+SSDAK IKIW R DG V TNVETPA + D+CI   ++G SG+L++A EQ RV+SYYIP LG AP+WCSFLD LTEELEEE +A+VY+DY+FVT AE+ S
Sbjct:  276 YGLPIVNLQFHDYARKVISSDAKVIKIWDRQDGAVFTNVETPAAVKDVCIVEGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIAS 392
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: A0A484EDZ8_BRELC (NUC153 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDZ8_BRELC)

HSP 1 Score: 148 bits (374), Expect = 2.580e-39
Identity = 70/117 (59.83%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    1 FGLLRLNLQGPE--KRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEVWS 345
            +GL  +NLQ  +  ++V+SSDAK IKIW R DG V TNVETPA+I D+C+   S+G SG+L++A EQ R++SYYIP LG AP+WCSFLD LTEELEEE +++VY+DY+FVT A++ S
Sbjct:  275 YGLPIVNLQFHDYARKVVSSDAKVIKIWDRRDGAVFTNVETPAEIKDVCVVEGSQGKSGVLLVAGEQERIMSYYIPELGIAPKWCSFLDSLTEELEEEAQSTVYDDYRFVTRADIAS 391
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: H3GLA6_PHYRM (NUC153 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLA6_PHYRM)

HSP 1 Score: 148 bits (373), Expect = 3.540e-39
Identity = 70/117 (59.83%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    1 FGLLRLNLQGPE--KRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEVWS 345
            +GL  ++LQ  +  ++V+SSDAK IKIW R DG V TNVETPA++ D+C+   ++G SG+L++A EQ RV+SYYIP LG AP+WCSFLD LTEELEEE +A+VY+DY+FVT AE+ S
Sbjct:  275 YGLPIVDLQFHDYARKVISSDAKVIKIWDRRDGAVFTNVETPAEVKDVCVVEGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIAS 391
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: A0A3F2RWL0_9STRA (NUC153 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWL0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 6.140e-39
Identity = 69/117 (58.97%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    1 FGLLRLNLQGPE--KRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEVWS 345
            +GL  ++LQ  +  ++V+SSDAK IKIW R DG V TNVETPA++ D+C+   ++G SG++++A EQ RV+SYYIP LG AP+WCSFLD LTEELEEE +A+VY+DY+FVT AE+ S
Sbjct:  251 YGLPIVDLQFHDYARKVISSDAKVIKIWDRRDGAVFTNVETPAEVKDVCVVEGAQGKSGVILVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIAS 367
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BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Match: A0A662WTJ8_9STRA (NUC153 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTJ8_9STRA)

HSP 1 Score: 147 bits (371), Expect = 6.990e-39
Identity = 69/115 (60.00%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:    1 FGLLRLNLQGPE--KRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAHDSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEASVYEDYKFVTNAEV 339
            +GL  +NLQ  +  ++V+S+DAK +KIW R DG V TNVETPA+  D+CI   ++G SG+L++A EQ RV+SYYIP LG AP+WCSFLD LTEELEEE +A+VY+DY+FVT AE+
Sbjct:  278 YGLPIINLQFHDYARKVISTDAKVVKIWDRRDGAVFTNVETPAEAKDVCIVEGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEI 392
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40526.10481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI6.740e-5484.76NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A067CRC6_SAPPC1.070e-3965.71NUC153 domain-containing protein n=3 Tax=Saprolegn... [more]
A0A835Z278_9STRA1.130e-3970.71WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A3M6VIN9_9STRA1.370e-3960.87NUC153 domain-containing protein n=2 Tax=Peronospo... [more]
G4YXE2_PHYSP1.890e-3960.68NUC153 domain-containing protein n=21 Tax=Phytopht... [more]
M4BWD3_HYAAE1.890e-3961.54NUC153 domain-containing protein n=1 Tax=Hyalopero... [more]
A0A484EDZ8_BRELC2.580e-3959.83NUC153 domain-containing protein n=1 Tax=Bremia la... [more]
H3GLA6_PHYRM3.540e-3959.83NUC153 domain-containing protein n=1 Tax=Phytophth... [more]
A0A3F2RWL0_9STRA6.140e-3958.97NUC153 domain-containing protein n=3 Tax=Phytophth... [more]
A0A662WTJ8_9STRA6.990e-3960.00NUC153 domain-containing protein n=2 Tax=Nothophyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40526contigH-paniculata_contig40526:368..1125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue3.9e-46
Seed eggNOG ortholog2880.D7G3M9
Preferred nameNOL10
KEGG koko:K14788
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG2321@1,KOG2321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930240.7588115-CDS-H-paniculata_contig40526:367..5251622930240.7588115-CDS-H-paniculata_contig40526:367..525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40526 368..525 +
1691481205.9826407-CDS-H-paniculata_contig40526:367..5251691481205.9826407-CDS-H-paniculata_contig40526:367..525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40526 368..525 +
1622930240.7859495-CDS-H-paniculata_contig40526:935..11251622930240.7859495-CDS-H-paniculata_contig40526:935..1125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40526 936..1125 +
1691481205.994984-CDS-H-paniculata_contig40526:935..11251691481205.994984-CDS-H-paniculata_contig40526:935..1125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40526 936..1125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40526.10481.1prot_H-paniculata_contig40526.10481.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40526 368..1125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40526.10481.1

>prot_H-paniculata_contig40526.10481.1 ID=prot_H-paniculata_contig40526.10481.1|Name=mRNA_H-paniculata_contig40526.10481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
FGLLRLNLQGPEKRVLSSDAKTIKIWSRNDGQVLTNVETPADINDLCIAH
DSRGDSGLLMMAAEQSRVLSYYIPNLGPAPRWCSFLDVLTEELEEEGEAS
VYEDYKFVTNAEVWS*
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mRNA from alignment at H-paniculata_contig40526:368..1125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40526.10481.1 ID=mRNA_H-paniculata_contig40526.10481.1|Name=mRNA_H-paniculata_contig40526.10481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=758bp|location=Sequence derived from alignment at H-paniculata_contig40526:368..1125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGGTCTCCTCCGTCTCAACTTGCAGGGACCCGAGAAACGAGTGTTAAG
CTCTGACGCGAAAACCATCAAGATTTGGAGCCGCAACGACGGGCAAGTGC
TGACCAACGTTGAGACACCTGCCGACATCAACGACTTGTGCATCGCTCAT
GACTCGAGGTACGCACCCATGGACAGCCGGCTCTAGAGGCGATGGGTTAC
GTTTTAGTGGATGTGGGACAAGGTGGCGGCGGCGGTGGCAAGGGGGCGTA
GTTATGGTTTGCATGTCATGGTTGTTAGACCTTTGACCACGCATCCTCGG
GAGAACCGGAACTTTGTTCCCATCCGAGCGATTCCCCCGAGGGGGGAGAA
ATAGAAAACATGCCATTAATAAAATAAAAATTGGAGGTATGCTCAGTTCT
TGCAATACTGCTGAATGAGTGGCTAATTGAATCCATAAACCGACAGAAAC
ATCCATCCAACCATCTTAGCTCTTTTGTTCTCTTTTTTTTTTTTTCTAGT
ACGTTTTTTTTTTTTTTTTAAATAACTTCCCCTCTCCTTTAAAACACAAT
ATGCACCAAAATGGACAGGGGTGACTCGGGATTGCTGATGATGGCGGCGG
AACAGTCCCGCGTCCTATCGTACTACATCCCTAACCTGGGACCAGCACCG
CGATGGTGCTCCTTCCTTGACGTCCTGACCGAAGAGTTGGAGGAGGAAGG
GGAGGCATCCGTGTACGAGGACTATAAGTTCGTCACCAATGCCGAGGTGT
GGAGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40526:368..1125+

>mRNA_H-paniculata_contig40526.10481.1 ID=mRNA_H-paniculata_contig40526.10481.1|Name=mRNA_H-paniculata_contig40526.10481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig40526:368..1125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGGTCTCCTCCGTCTCAACTTGCAGGGACCCGAGAAACGAGTGTTAAG
CTCTGACGCGAAAACCATCAAGATTTGGAGCCGCAACGACGGGCAAGTGC
TGACCAACGTTGAGACACCTGCCGACATCAACGACTTGTGCATCGCTCAT
GACTCGAGTTTGGTCTCCTCCGTCTCAACTTGCAGGGACCCGAGAAACGA
GTGTTAAGCTCTGACGCGAAAACCATCAAGATTTGGAGCCGCAACGACGG
GCAAGTGCTGACCAACGTTGAGACACCTGCCGACATCAACGACTTGTGCA
TCGCTCATGACTCGAGGGGTGACTCGGGATTGCTGATGATGGCGGCGGAA
CAGTCCCGCGTCCTATCGTACTACATCCCTAACCTGGGACCAGCACCGCG
ATGGTGCTCCTTCCTTGACGTCCTGACCGAAGAGTTGGAGGAGGAAGGGG
AGGCATCCGTGTACGAGGACTATAAGTTCGTCACCAATGCCGAGGTGTGG
AGTTAAGGGTGACTCGGGATTGCTGATGATGGCGGCGGAACAGTCCCGCG
TCCTATCGTACTACATCCCTAACCTGGGACCAGCACCGCGATGGTGCTCC
TTCCTTGACGTCCTGACCGAAGAGTTGGAGGAGGAAGGGGAGGCATCCGT
GTACGAGGACTATAAGTTCGTCACCAATGCCGAGGTGTGGAGTTAA
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