mRNA_H-paniculata_contig4043.10462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4043.10462.1
Unique NamemRNA_H-paniculata_contig4043.10462.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4043.10462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4043contigH-paniculata_contig4043:8188..13271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size541
Cds size540
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4043.10462.1prot_H-paniculata_contig4043.10462.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4043 8188..13271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930237.5266473-CDS-H-paniculata_contig4043:8187..83131622930237.5266473-CDS-H-paniculata_contig4043:8187..8313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 8188..8313 -
1691481204.4576657-CDS-H-paniculata_contig4043:8187..83131691481204.4576657-CDS-H-paniculata_contig4043:8187..8313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 8188..8313 -
1622930237.5519586-CDS-H-paniculata_contig4043:11814..119341622930237.5519586-CDS-H-paniculata_contig4043:11814..11934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 11815..11934 -
1691481204.4671378-CDS-H-paniculata_contig4043:11814..119341691481204.4671378-CDS-H-paniculata_contig4043:11814..11934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 11815..11934 -
1622930237.5708885-CDS-H-paniculata_contig4043:12294..124141622930237.5708885-CDS-H-paniculata_contig4043:12294..12414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 12295..12414 -
1691481204.477014-CDS-H-paniculata_contig4043:12294..124141691481204.477014-CDS-H-paniculata_contig4043:12294..12414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 12295..12414 -
1622930237.5965235-CDS-H-paniculata_contig4043:12757..128771622930237.5965235-CDS-H-paniculata_contig4043:12757..12877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 12758..12877 -
1691481204.4862328-CDS-H-paniculata_contig4043:12757..128771691481204.4862328-CDS-H-paniculata_contig4043:12757..12877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 12758..12877 -
1622930237.6133742-CDS-H-paniculata_contig4043:13217..132711622930237.6133742-CDS-H-paniculata_contig4043:13217..13271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 13218..13271 -
1691481204.495344-CDS-H-paniculata_contig4043:13217..132711691481204.495344-CDS-H-paniculata_contig4043:13217..13271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4043 13218..13271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4043.10462.1

>prot_H-paniculata_contig4043.10462.1 ID=prot_H-paniculata_contig4043.10462.1|Name=mRNA_H-paniculata_contig4043.10462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
EFWERVAKAVGAELSPDQVEEMFLSQSARFLRVAAEHGNVARWENMVKFL
HEHLSPEQVKEILLSEGTTVLAVAAESGNIDRCENVMNAVREELSRDQAK
AMLLSQGARLLEVAAGSGSRDKWESFVNVLREELSAEQVKGMLTLPGARL
LLVGLATGNVAQWESVVKTFREELNPEQV*
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mRNA from alignment at H-paniculata_contig4043:8188..13271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4043.10462.1 ID=mRNA_H-paniculata_contig4043.10462.1|Name=mRNA_H-paniculata_contig4043.10462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5084bp|location=Sequence derived from alignment at H-paniculata_contig4043:8188..13271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTTTGGGAGAGAGTGGCGAAAGCCGTGGGCGCGGAGCTCAGTCCAGA
CCAGGTGCAAATTATCCCCAGGCAGCATCATAGCTCTCAGCGGAATTGGA
GAAGCTGTTTAATTCACCTTTGTAATTTGTCGATTGTTATGAAGATATGC
TGTGAATGCTGGTGGCGGAGGCGGTACGAAGAGAAATGTTGCATGAACGG
GAAGCCTTATTCACGTTTGACAACAGTGTTTGGTTTGCAACGTGTGTATC
AGATTCCGTTGGACTGGCTTTGGACTGATGTCGAGTAATCGTGCTATTTC
GTTTGCGGCACGCTGGTAGGGGGGCCAAAATCATCGTGGTCGCAATTCGG
TTCGTGTTGAGTCTGAATGATTTGTTATATGTGGTGTTTTCTAGGTGGAG
GAAATGTTTCTTTCTCAGAGCGCGAGGTTTTTGCGAGTGGCCGCGGAACA
TGGGAACGTCGCCCGGTGGGAGAACATGGTGAAATTCTTGCATGAGCATC
TTAGTCCCGAACAGGTGCGGATATTTCCGGGAATGCATCACTGCTCTGAG
AGCAGAGTTGAACAATCTGTCTCGTTGAGTTTTTTGGGTTTTCGATTCGT
TATCGATACGTATAGTAGGCGCTGATATCGGAGGCAACACGTAGGCATTT
GCAGCATCCGACGGCATAAATGGGATCATGCAACGGGAAAACGTCGCTGC
ATTTGAGGATGTATTTTATGCGTCATGTGCTTCAGCGTTAGTTCACCTGT
CTTTGGACATCCGGCTTGTAGCGGTTTGCTTCTGTTTGCTGCCAACTGGT
GCCACTTAAGTCTGAATAATGGTATTCTAGTGCAAACCCGAATGAGGTTG
CGTCCAGGTGAAGGAGATTCTTCTTTCGGAGGGTACCACCGTGCTGGCAG
TGGCGGCGGAAAGTGGAAACATCGACCGGTGCGAGAATGTGATGAACGCG
GTGCGCGAGGAGCTCAGTCGCGATCAGGTATAGATACCCCTCGACGTGGT
CACTGTTCTCAGAGCGGAGTTGGACAAGCGGTTTTATACACCTTTGTAGT
TCATGTAGTTTTATCGGTGTCGGCAGTGAACGGGGGTAGCGCATGTGACC
CGAGGGCATTTGTCGCATCCGATGGCATCACTAAGTAAACAATGCGGAGT
CATTACCGGGTTTAATAAGGGGTTTATTTGTATAACATTATGTTGAAGTT
TCGGTTAGACCGTCTTCCGCCTATCGTCGTGTCGTGATTGACTTCAGTTT
GCAGCCTGTCCGCGCATCCGCAGTCTGAATAGTTGTTACTTACTCAACGC
ACAACCCGTATGATCTGGGGCATATGATTGCTCCCAGGCGAAGGCGATGC
TTCTTTCACAGGGTGCGAGGTTGCTTGAAGTGGCGGCGGGAAGCGGGAGC
AGGGACAAGTGGGAGAGCTTTGTAAACGTTTTGCGTGAGGAGCTCAGTGC
TGAACAGGTGTGTAGCCCAGGTACAGTGAAACATGTCAGAGAAGGTCACT
GGCTCTACTTTGTGATGGATATCCCACCTTCGTGTATCAGATTTTTTTAT
TGGTCCCCTGGAAGGTGATTGACACTTTGATATGGATTTTGGTTGAACGA
ACGACGCATACTAGGTAACATACTTTGGCCCAGTACAAGAGGAAATTGCA
AGACGTGGGGACTGCGGGGCTACAATTTTAGTGAATTTCGATCGAATCTC
TGTATATTGTGGGCTGAGCCATGTTGAGGATAATCGAGAGTCTAGGAATA
CACTACGGGTAGCAGAGGTGGGCATCTGCGGCAACTTATGCGAGAATACC
AGTGGCACGCCGACTAGACGAAAAAAGTAGCTATTTTAGAGAGGACAGGG
CCGATGGATGAGGTAGAAGCGTCAGGTAAAAATGAGACAAGTACAACTGG
ACGGTACTACGGCGAGTAAAGCTGCGCCGGGATTAAACTCGGTGAGTGTC
GCCTGCTTCTTGCGTTGCCAATTGATTCTGCCTAGCGCGGCCACCCTCGC
CAGCCTTCTGTATAATCGGGGCAACCTATCCATTGCCAGTCGCTGCTCTC
CGTTGTGCCACACGACGTGCCATGACAATCCATTGTTTGCCTTTCTAACT
CATGAAATGACCCGGATCATCGCCGTCAGTGTGATATCTGCTCTGTACTC
TGGCGGTCAAATGCCCTTCGGGAGCCCGCTCACCACCGTCTCGCTCAGGC
CCACCGTCCAGATTCTATTTGGCATTCTGTCCTCTACCTGCAACATCCCA
TTTTAGGCTTCCTGGGGCACTGTATCGCATGTCGCATGTAGCAAGAAAGG
CCACAAGGGCAAAGAGCGCGGGAGTAGCGGTGGTGACCAGACGGCTAGCC
AAGAAGCGACGACAGACACGTCCGGCCAGTCATCCACCTCATCGACCCAG
CGACCGGGAGGTCAGAAATCGACTGGTTCAACCGTCGACAAGGCAATGGT
GGTGTCGCAGCGCACAAGGGGCCTAGGAAGCGCGCTGAGCGGTGGCCGCC
AGGAGCGTTCGCTACGAAAGCCTTTTTGAGGGCTGGCAAGCAGCAGGGTG
TCATCATGGGTCTCGTGTTTGGGCGTATTTTGGTCTGGAGAGGAGCAGGA
AGAATCGAGACGGTTATGGAGACAGTACCATCGGCGCCTGTTATGGGCCG
CTCCACACGATTGTCACTAACAGCAGTGATGGAGTTGGAATGAGGACTTA
AGTGTACCTAGGCAATCAGGTATACGTGGAACACTTGGATAGTGATGTTC
GCGGGTGTCTGGAGTTACTGAGAGCAGTTGTCGGGCGGATAATCTTGTAG
ATACTGCTAGACTTGGGAGCTGATGCGATGGCTTTGTCTGGAAATGCTTT
TCCCCGGCTGCAGTTGCAGTGGACAGGGACAGCTCTCGAGACAGATACCG
GCAAATTGAAGGCACAGGTGGCTGACGGGCGCGAGGTGGACCTGACGGAG
GACACAATTTCATTAAATCTTATTTTCGCCTCATGCTGGGGCGACATGTG
GATCACGCTACCCAAGCTACCACTCATGGTGTTGCGGGGGAGTTCTAGAG
CTGTCATTCTCGGTGCAGCGACGATTCGGGAGAACCTGGGTATTGACGTG
ATGCGACAGCTTAAAAAACCGTGGAATGACTTTAGGGCAGAAACATGGCG
ACCACTGGGAAACGAAGGGGCGGGGTGACATTACTTACAGACCAAGATAC
CTGGCGCACGGTCGGCGTGTCGAGGTGAAGATGGAGACTTGGCTGCGGGT
CGCCGTTACTTCAGTCGATGGCAAAGATTGGTAAGGATGAGTCAACTGTC
ATGGTGGTGCAGGTAGGGCGTGTCATGTTCATGCCGGTGGAAGTGACGAT
CCGAGAGGGGGCAGTGGCGTTAGAATTGGTAGTAGAGGAGGCGAGAGAGC
TAGGGAGTTGGTGTTGAACTCGTGCTTGCAGGCGTTTTGGCGGGCGCTGG
GACCCGCCTGCAGATCTGGATATTCTGCCGGTGCATGTACCCGGGGTCCA
TCGCCTTTTGACGTTGTCTAGAACGCAAATATGGCATTTGCGAATCCCCA
GGCGTAGCGTTAAGATGGCAATGCCAAAAAAGGAATCCCATCGAATTGTG
GCCGATTATGGCGCAATGGAAAACCTGGTCGCGCCTTTGGCAATGCTGAA
TGCCGAACGTGGAGGAGACAAGGCAAGGTATGGCAGGAGCTAACGTGTTT
TGCATGCTGGATCTACGATAGGGATACTGGCAGATGCCGTTGGACCTAGA
GGTGCAAGAGATTTTTATAATGGTCACGGTCAAGGAGATACTCACGCCGA
CCAGAGCTTCGCAGAGAATGCTGAAGGCGACACTAGTAGCTACTCCAGGG
GACGATGGAAAACGTTCTAGAAGGTATGCTAAAACGGCCAAGTCATGTAC
AACCCAGCGACCGAAGGCGGTCCTGGACGGCTATCCCCCAATATACCCTA
GGTTTGAGCTTAACCGAAGGGTTGACCGAGAAGACAATACTCCATGCGTT
CTGCATGGGTCTGGAATCGGAACACGGTAAAACGTGTCGTGGGCGTAAGC
TTCTTCCCTCTCGATGCTGCTGATACAGATGTTTTTTTTTGTGTCTGGGG
TAGAACGAAAGAAGGCCTGCTCAGTAAAATCTGATATAGGACTACGTGCT
GGTACGTGGCGGGAAAATGTTCCGGCATTAGGTGCGCTGATGCGGGGAGT
TTCTCGGGGGTAACTGTTTCTTGTGACCCAGAGAGAGTATAAGACCCGAC
TACTATGCAGAAAATGAGCGAGACACCATATTTGAAGAACACGCGCAGCG
TGCGCGGACATGGTGAATGAAATAAAAAGGAGAGTAGACGGAGAATCGCG
CGGCGGTGTGGGAGGCGGCCACCGGCGTGCATCGGAGGTTGCACCGCTGT
ACCATCGGCAAGCATACCTCTAGGTGCTGATCTCTCCTGACGAAGCGATG
GGTTTGGGGGAGTGTGCCACCTGAGGAACTGAACACAGGTGGTGCCGAGA
CTACAATGAGGAATGAGCGGCTGGCGGTTTTAAACGCATTGTCTAAGACG
GTGAAGCTGAGGTAGCCGGTGGCCGACAAGGAGGCGTTTTCAATCGTTTT
ATCGTTCCTGAGACTGTTGTACATTTCAAGGACGGGAGGCAAATATTCTG
CGACCATCAGAATCTGGTTGGGATGGGTGCAGATTATCCTGGACAACCTA
TTTCGTCAACATTTGCACATGTTATTGATGTCTTATCAACAGATGAGGTG
AACGCTAGTAACGGACGCCACACGAAGGCTTTTGTAGCATCGATGGCAAT
ACTAGAATCACACAAACGAAAAGGTATTACCCTTTGATAAGAGGATGTCT
TCTTTTCATTTTTTTGTTCGCATTCGGTTGGACTTGCTTTGGGCTTACGG
TTTGAATAATCTTGTTTGTGCAAAGCCTGGATGACTTGCTGCACATGGCT
GCTTCCAGGTGAAGGGGATGCTTACTTTGCCGGGCGCGAGGTTGCTGCTA
GTGGGCTTGGCAACTGGGAACGTGGCCCAGTGGGAGAGCGTGGTGAAAAC
GTTTCGTGAGGAGCTCAATCCCGAGCAGGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4043:8188..13271-

>mRNA_H-paniculata_contig4043.10462.1 ID=mRNA_H-paniculata_contig4043.10462.1|Name=mRNA_H-paniculata_contig4043.10462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig4043:8188..13271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTTTGGGAGAGAGTGGCGAAAGCCGTGGGCGCGGAGCTCAGTCCAGA
CCAGGAGTTTTGGGAGAGAGTGGCGAAAGCCGTGGGCGCGGAGCTCAGTC
CAGACCAGGTGGAGGAAATGTTTCTTTCTCAGAGCGCGAGGTTTTTGCGA
GTGGCCGCGGAACATGGGAACGTCGCCCGGTGGGAGAACATGGTGAAATT
CTTGCATGAGCATCTTAGTCCCGAACAGGTGGAGGAAATGTTTCTTTCTC
AGAGCGCGAGGTTTTTGCGAGTGGCCGCGGAACATGGGAACGTCGCCCGG
TGGGAGAACATGGTGAAATTCTTGCATGAGCATCTTAGTCCCGAACAGGT
GAAGGAGATTCTTCTTTCGGAGGGTACCACCGTGCTGGCAGTGGCGGCGG
AAAGTGGAAACATCGACCGGTGCGAGAATGTGATGAACGCGGTGCGCGAG
GAGCTCAGTCGCGATCAGGTGAAGGAGATTCTTCTTTCGGAGGGTACCAC
CGTGCTGGCAGTGGCGGCGGAAAGTGGAAACATCGACCGGTGCGAGAATG
TGATGAACGCGGTGCGCGAGGAGCTCAGTCGCGATCAGGCGAAGGCGATG
CTTCTTTCACAGGGTGCGAGGTTGCTTGAAGTGGCGGCGGGAAGCGGGAG
CAGGGACAAGTGGGAGAGCTTTGTAAACGTTTTGCGTGAGGAGCTCAGTG
CTGAACAGGCGAAGGCGATGCTTCTTTCACAGGGTGCGAGGTTGCTTGAA
GTGGCGGCGGGAAGCGGGAGCAGGGACAAGTGGGAGAGCTTTGTAAACGT
TTTGCGTGAGGAGCTCAGTGCTGAACAGGTGAAGGGGATGCTTACTTTGC
CGGGCGCGAGGTTGCTGCTAGTGGGCTTGGCAACTGGGAACGTGGCCCAG
TGGGAGAGCGTGGTGAAAACGTTTCGTGAGGAGCTCAATCCCGAGCAGGT
GTAGGTGAAGGGGATGCTTACTTTGCCGGGCGCGAGGTTGCTGCTAGTGG
GCTTGGCAACTGGGAACGTGGCCCAGTGGGAGAGCGTGGTGAAAACGTTT
CGTGAGGAGCTCAATCCCGAGCAGGTGTAG
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