mRNA_H-paniculata_contig4037.10446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4037.10446.1 vs. uniprot
Match: A0A6H5KTL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL5_9PHAE) HSP 1 Score: 196 bits (499), Expect = 9.220e-47 Identity = 391/1125 (34.76%), Postives = 467/1125 (41.51%), Query Frame = 1
Query: 1318 VAKAVIQEELDDVNEEKVKERKLLMEERQRQLDSLRVMDAAQLKEVTRAQQGTLLAKIKERQSRVHAALAVSAKEELKRLKAEARKAAGMTEDVQSLRDSEDNDSDEQEGQREPGAAATVRGSNGSGALDGEEDVKGIVAREEEAVATIAAKLAATRAAAKVEGGAEEGESALSEEERDVEEAQRRDDHDSADEWEVTLAAKGSKXXXXXXXXXXEPSESESD------EELEVLPA---AGMPNLLGLKQ-----------WQPAPIIDGGGNTASGTPPITNSKNDRKNHGGGSDAATRALAALPKGMRFSAPKAADKSRAAQRRQLAASARTVANDRWAAQLGYQDGEEHIRDLKYMELKRRQQAQHERGRKEKENAAMAARLLEYAKHADADEEELFGEEAEMADGKTA-TATTSDKEEGSRNTLSTSASAFSSGDAGDPEATNDETAATSNPECSASLAEGPQECGPGDPTAPSSPLTVGEEDEGDASSFTPTGEGATDAEPAASTAQXXXXXXXXXXXXXXXXXXENRSNCGSE--DESTTPGEQSKGT-ESSAEDQLKGGSTASPAAAXXXXXXXXXXXXXXTMKAPTPGRKPPARPA-----RPAMVRTYGRKVRDADGNPMAKPADAGLTGPSTVEGVRP-----------------LSADSQDLWLEEPDSAPPAAPLEELESSAHVGSGDERGGGGNGVEDSCGMTLGLDDXXXXXXTTQPRMDSSSKKSISTEYATAVVGAPSSAEADGSSQTGADVAKDDTAAVHSGIPAVPADDRP----VESGMKRKLVEDDAESIPTSAGEVERGNKNQPTELATDA----------------TESAEELAAPSSFIKLKIAADGSLAPAPVQRCLGAFFAKDDATA-ASGSSKHPVDSVTRAPLAKKKCITAFFGPGNAASTSDVATAAPTATAVDGEAGVAGATMVLDTDGKENVSEGAVGVAAAAAAATSDVHAKVQNSAVTEEEIDGLVVAAAENNATKKTKGEEGYNQSAVVEEKNXXXXXXXXXXXPKEPKDRSAKFRAILEAERLQVRHAKKLRKSGMMDEEAEXXXXXXAVRGLGDFGFGVXXXXXXXSATGTRVGKDDDEEEVDDEIREE 4491
V KAV+QEELDD NE+K ERK ERQRQLD+LRVM+AAQLKEVTRAQQGTLLAKIKERQ + AA+ +AK+ELK L+AEARKAAG+TE+ ED G +V+G+V +EE AV D D A T A SK ES S ELE+LPA A + L+G + RALAALPKGMRFS+PKAADKSR A R++LAASARTVA+DRWAAQLG++DG+EHIR+LK E+ A+AA+LLEYAKHAD DEEE FG E G A TA D+ EG+ + DAG ++PSSP + G + AEP A XXXXXXXXXXXXXXXXXX E + +P E G E +ED K G A+ AA XXXXXXXXX XXX P PA RP ++RTYGRK A A A L G + ++A+SQ LW EE D EEL +S VG G + VEDSC +L LDD XXX +AV +P+ P D E+G KRKL + A + TE T + SSF+K+K+ ADG L AP Q L FF K A A+ S AFFG S++D AAP +G GAT+ D E VG + AA + + SA E + + E N A +E XXXXXXX PKEPKDRSAK+RA+LEAER+ + AKKLRKSGMM XXXXXXAVRGLGDFGFGV SA G +DDEIREE
Sbjct: 514 VVKAVVQEELDDANEKKAAERKKAAAERQRQLDALRVMNAAQLKEVTRAQQGTLLAKIKERQDALRAAIVANAKKELKALRAEARKAAGITEE-------EDXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGLEVEGVVEKEERAVXXXXXXXXXXXXXXXX----------------------XXKDSDFA-----TKAKGPSKGTLVPAEHGSASGESGSXXXXXXXSELEILPADPTAALRALVGRQHSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRALAALPKGMRFSSPKAADKSRNANRKRLAASARTVASDRWAAQLGFRDGQEHIRELK-------------------ESEALAAQLLEYAKHADEDEEE-FGATGETTSGAAASTAADGDRAEGAAPKV----------DAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPSSPKKSDSQ-----------GVSSRAAEPTAEAVXXXXXXXXXXXXXXXXXXXXXXXQQNEERSEPKPSPAEGVAGVPEPDSEDGDKFGDAATCTAAAXXXXXXXXXPXXXXXXXXXXXVVVPLAPAAPPIPRPKIMRTYGRKQTSRHSEDAADGAGA-LAGSAAXXXXXXXXXXXXXXAGAGGKKSTMTAESQALWEEEEDEEG-----EELPASPRVG-------GASLVEDSCTFSLALDDLSDXXXXXXXXXXXXXXXXXX------------------------------XSAVSLSVPSKPDDGDDDGGQAEAGAKRKLERPAGDGSTDDAADSGVATATAITEARTASGXXXXXXXXXXXXXXXXXXXXXXXTGSSFVKMKLKADGELKTAPTQPSLSNFFQKGAGPALAAESXXXXXXXXXXXXXXXXXXXAAFFGD----SSNDAPVAAPEVVVPEGTP-EGGATIASD--------EAGVGDTVSVAAXXXXXXKETEPSAA-ESKNNPAAXXXXXXXXXXXXXXXEDANGDAADDE--AXXXXXXXGEEPKEPKDRSAKYRAMLEAERIATKKAKKLRKSGMMXXXXXXXXXXXAVRGLGDFGFGVPGGGTGTSAAGXXXXXXXXXXXIDDEIREE 1504
BLAST of mRNA_H-paniculata_contig4037.10446.1 vs. uniprot
Match: D8LK00_ECTSI (DEK C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK00_ECTSI) HSP 1 Score: 108 bits (270), Expect = 7.870e-20 Identity = 150/427 (35.13%), Postives = 183/427 (42.86%), Query Frame = 1
Query: 370 GPTDEMLREAIREAVTAAANSDTITPKHIRLTMEERFSCNLNGRKAFMKDMIIQALESCAAQEFDGRSS-----------GAQDSGHQDLGDDTISPSSPSLPVSLNTEVDSNDAANLPVLPGLEDTEDKSXXXXXXXXEDRGDTSPPPSSMMPRPQQRATSARRALAQAKLRRTVRGARTAGTSTLSANSSLSDSDTDPAAADGSGGSAVKLSRXXXXXXXXXXXXXSEGGNVSDEHNEVSSMSGRDGSSDFSSSGESGKHRGKAKKKAIAAAKHGPKXXXXXXXXXKVTKGV--------SGVDEGQGLSGLVDSDEEGAKGLGAAADRAAQAVAKAVIQEELDDVNEEKVKERKLLMEERQRQLDSLRVMDAAQLKEVTRAQQGTLLAKIKERQSRVHAALAVSAKEELKRLKAEARKAAGMTE 1593
GPTDE L EAIR + +T K + +E+RFSC+L RK F+K +++ +++ DG SS G G Q + S +L+ E D D + +D G+ P +MPRP R TSARRALA+AK++R +R A+T S XXXXXXXXXX GK KKK + K K TK DEG S LVDSDE + AD A V KAV+QEELDD NE+K ER RQRQLD+LRVM+AAQLKE TRAQQGTLLAKIKERQ ELK L+AEARKAAG+TE
Sbjct: 165 GPTDESLLEAIRGIPGEVEDIGKLTAKQVIAMLEKRFSCSLEHRKKFIKAELVEVVQAALG---DGESSXXXXXXXXXXVGEASEGEQQXXSSSPEDSDDEATAALDKESDQEGQKKQQP---TSDQDSSDNGLESSLSDDAGELEDMP--VMPRPDPRKTSARRALAKAKVKRAIRRAKTGTVSGXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXKRTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTKKKPEGSK---GKKSNGRGASAKATKXXXXXXXXKKGAADEGG--SDLVDSDEGKEEAGVEGADEAPSKVVKAVVQEELDDANEKKAAERXXXXXXRQRQLDALRVMNAAQLKEATRAQQGTLLAKIKERQDAXXXXXXXXXXXELKSLRAEARKAAGITE 573
BLAST of mRNA_H-paniculata_contig4037.10446.1 vs. uniprot
Match: A0A836CKU5_9STRA (DEK C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU5_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.290e-6 Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 4240 PKDRSAKFRAILEAERLQVRHAKKLRKSGMMDEEAEXXXXXXAVRGLGDFGFGVXXXXXXXSATGTRVGKDDDEEEVDDEIREE 4491
PKDR+A++RA+LEA+R + AK+L KSG+ DEEA XXXXXXAV+GLGDFGFG+ G G D++E++ E+REE
Sbjct: 1214 PKDRAARYRAMLEADRKAAKRAKRLGKSGIADEEAXXXXXXXAVKGLGDFGFGLGK-----GGVGGEKGGDNEEDDDGGELREE 1292 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4037.10446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4037.10446.1 >prot_H-paniculata_contig4037.10446.1 ID=prot_H-paniculata_contig4037.10446.1|Name=mRNA_H-paniculata_contig4037.10446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1497bp LGEEQGERGSLAQVDYYKRVDDKISLDQTTTLSHEETPAWSAGDTLVEDDback to top mRNA from alignment at H-paniculata_contig4037:638..8598- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4037.10446.1 ID=mRNA_H-paniculata_contig4037.10446.1|Name=mRNA_H-paniculata_contig4037.10446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7961bp|location=Sequence derived from alignment at H-paniculata_contig4037:638..8598- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4037:638..8598- >mRNA_H-paniculata_contig4037.10446.1 ID=mRNA_H-paniculata_contig4037.10446.1|Name=mRNA_H-paniculata_contig4037.10446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8982bp|location=Sequence derived from alignment at H-paniculata_contig4037:638..8598- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |