mRNA_H-paniculata_contig4029.10432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4029.10432.1
Unique NamemRNA_H-paniculata_contig4029.10432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4029.10432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4029contigH-paniculata_contig4029:10030..10996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930233.4287093-CDS-H-paniculata_contig4029:10029..103821622930233.4287093-CDS-H-paniculata_contig4029:10029..10382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4029 10030..10382 -
1691481202.494147-CDS-H-paniculata_contig4029:10029..103821691481202.494147-CDS-H-paniculata_contig4029:10029..10382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4029 10030..10382 -
1622930233.4437237-CDS-H-paniculata_contig4029:10890..109961622930233.4437237-CDS-H-paniculata_contig4029:10890..10996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4029 10891..10996 -
1691481202.50467-CDS-H-paniculata_contig4029:10890..109961691481202.50467-CDS-H-paniculata_contig4029:10890..10996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4029 10891..10996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4029.10432.1prot_H-paniculata_contig4029.10432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4029 10030..10996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4029.10432.1

>prot_H-paniculata_contig4029.10432.1 ID=prot_H-paniculata_contig4029.10432.1|Name=mRNA_H-paniculata_contig4029.10432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
RIELHEGDRYCRKWILVRILGVACFPATRHPKNEKGGPMARSHCATARCS
SGARKRPIPSQVLTSKPRRYRRTMKFKWGATPFRLEQRRKKTAASASAAA
AAPVTIPPPPPPPVLNVSNRGTTAAVIVPCDPSSITEAATTIPYRIKTRG
STA
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mRNA from alignment at H-paniculata_contig4029:10030..10996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4029.10432.1 ID=mRNA_H-paniculata_contig4029.10432.1|Name=mRNA_H-paniculata_contig4029.10432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=967bp|location=Sequence derived from alignment at H-paniculata_contig4029:10030..10996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATTGAGCTCCACGAAGGGGACCGCTACTGTAGGAAATGGATTTTGGT
ACGGATACTTGGAGTTGCGTGTTTTCCAGCGACGCGCCATCCAAAAAACG
AAAAAGGTCAATAATGCCAACATATTGTACGAACAGTACTCGTGCGGCAC
ATTACAGCTTGCTGCTGTTCATTTCAAATTTCAAACTTTGTGTTCCGTGA
TACGCATATCGTGTAGTGTAGATGGCCGAGGCCAGCCGCAATAGACCCAG
AGTTACAGTAGTATTGGAATATCGGAACATTGTCTGTGTCGTTTCTTGTT
CCAATAGCAGTTAGAGCTACTTCTTAGATCCGCTGCTTGGAGCTCGACCT
TAGCTTGCAGCAGGTAGGTGCAAACATACATGTACCGGTGGTGCCCAAAT
TACAGTACAGCAGAAACTGTGCTGTCCCTGACCTATAGCATATACTATAT
ACAGTGGTAAGGATCCCTCAAGTGCGCTTGTACTGTAAACATAGCACTGC
ACTCCCATACGTCTCGCTCAGGTTCGAATGTGATAGGCGATGCATGCTCC
CTCCACAGACGAGGTCCCCACATCACGGACGATTTGGCACCCTTCCTTTC
TTCGTCTCTTGCAGGTGGACCGATGGCACGCTCACATTGCGCGACAGCAA
GGTGCAGCTCCGGAGCGAGGAAGCGACCCATCCCATCGCAAGTTCTCACC
TCAAAACCTCGGCGATATCGGAGGACGATGAAATTCAAGTGGGGCGCTAC
ACCGTTCAGGTTGGAGCAAAGGAGGAAAAAGACGGCGGCGTCGGCATCAG
CAGCAGCAGCAGCTCCGGTCACGATACCGCCGCCTCCTCCGCCGCCGGTG
TTGAACGTCAGCAACCGGGGAACCACGGCGGCGGTGATCGTCCCGTGCGA
TCCATCGTCGATTACAGAAGCGGCAACGACAATTCCTTACAGGATAAAAA
CGAGAGGCAGCACGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4029:10030..10996-

>mRNA_H-paniculata_contig4029.10432.1 ID=mRNA_H-paniculata_contig4029.10432.1|Name=mRNA_H-paniculata_contig4029.10432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig4029:10030..10996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATTGAGCTCCACGAAGGGGACCGCTACTGTAGGAAATGGATTTTGGT
ACGGATACTTGGAGTTGCGTGTTTTCCAGCGACGCGCCATCCAAAAAACG
AAAAAGAGAATTGAGCTCCACGAAGGGGACCGCTACTGTAGGAAATGGAT
TTTGGTACGGATACTTGGAGTTGCGTGTTTTCCAGCGACGCGCCATCCAA
AAAACGAAAAAGGTGGACCGATGGCACGCTCACATTGCGCGACAGCAAGG
TGCAGCTCCGGAGCGAGGAAGCGACCCATCCCATCGCAAGTTCTCACCTC
AAAACCTCGGCGATATCGGAGGACGATGAAATTCAAGTGGGGCGCTACAC
CGTTCAGGTTGGAGCAAAGGAGGAAAAAGACGGCGGCGTCGGCATCAGCA
GCAGCAGCAGCTCCGGTCACGATACCGCCGCCTCCTCCGCCGCCGGTGTT
GAACGTCAGCAACCGGGGAACCACGGCGGCGGTGATCGTCCCGTGCGATC
CATCGTCGATTACAGAAGCGGCAACGACAATTCCTTACAGGATAAAAACG
AGAGGCAGCACGGCGGTGGACCGATGGCACGCTCACATTGCGCGACAGCA
AGGTGCAGCTCCGGAGCGAGGAAGCGACCCATCCCATCGCAAGTTCTCAC
CTCAAAACCTCGGCGATATCGGAGGACGATGAAATTCAAGTGGGGCGCTA
CACCGTTCAGGTTGGAGCAAAGGAGGAAAAAGACGGCGGCGTCGGCATCA
GCAGCAGCAGCAGCTCCGGTCACGATACCGCCGCCTCCTCCGCCGCCGGT
GTTGAACGTCAGCAACCGGGGAACCACGGCGGCGGTGATCGTCCCGTGCG
ATCCATCGTCGATTACAGAAGCGGCAACGACAATTCCTTACAGGATAAAA
ACGAGAGGCAGCACGGCG
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