mRNA_H-paniculata_contig4001.10375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4001.10375.1
Unique NamemRNA_H-paniculata_contig4001.10375.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: D7FJH8_ECTSI (Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH8_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 9.900e-123
Identity = 194/283 (68.55%), Postives = 227/283 (80.21%), Query Frame = 1 
Query:    1 ADAKINVPSGSEPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNF--QEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRPRIHRERLHLPAATSMQAWYRMLRTQRVTVPLIEQRRASATTIARAWRQLAVSKRQERAATALQAWRRGVKGREMAIAMRWL 843
            AD  +N P+  EPL LYKA ENLNVAL AAE  GLQVVNIGA+DII GRPASILGL+WQLIR+HLLAQINLK CPDLIHLM+ GE+K  FF LPVE+VLLRWFNHHLRWGGSERRV+NF DDL+DG+CY  L+KELND F  +E +  E EDA R +FRRAC VISGA+ +GLAPLIR NHIT KAHLYNIAFVAQL+NRRPRIHRE LHL A+ +MQAW+RM+   R T P++E+RR SA T+ RA R+   ++ + RAATALQA  RG +GR +A   R+L
Sbjct:  188 ADTNVNTPTNDEPLSLYKANENLNVALEAAEKHGLQVVNIGATDIIQGRPASILGLTWQLIRIHLLAQINLKGCPDLIHLMEGGESKEAFFELPVEEVLLRWFNHHLRWGGSERRVANFGDDLADGRCYVTLIKELNDKFKGEEVDPTEEEDAKRAQFRRACLVISGAEGIGLAPLIRANHITGKAHLYNIAFVAQLLNRRPRIHRESLHLDASVTMQAWFRMVSVMRRTNPVLEERRRSAQTLTRACRRWMTARNRLRAATALQALWRGGEGRAIAANRRFL 470
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: A0A812VU38_SYMMI (FIM3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VU38_SYMMI)

HSP 1 Score: 166 bits (419), Expect = 1.750e-44
Identity = 87/190 (45.79%), Postives = 118/190 (62.11%), Query Frame = 1 
Query:   34 EPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELN----DNFQEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLIN 591
            + L +Y+ TEN N+A+ AA+  G QV+NIGA D+I+GRP  ILGL WQ+I++ L +QI+LK  P+L+ L+ +GE  +   ALP ED+LLRWFN+HL+ GGS R VSNF DDL D +CY+ LL +L+    D   E + ++          +A  VIS A  LG  P IR   I       N+ FVA L N
Sbjct:   20 DSLNVYQKTENNNLAVNAAKTIGCQVINIGAQDLIEGRPVLILGLLWQIIKIQLTSQISLKNYPELVLLLSEGEEMSALSALPPEDILLRWFNYHLKSGGSSRHVSNFGDDLKDSECYSVLLHQLDASNCDLCTESDPMD----------KAAHVISNAVKLGAYPFIRAEDICAANKKLNLGFVALLFN 199
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: A0A0D2U007_CAPO3 (Fimbrin n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U007_CAPO3)

HSP 1 Score: 158 bits (399), Expect = 1.190e-40
Identity = 83/190 (43.68%), Postives = 113/190 (59.47%), Query Frame = 1 
Query:   40 LGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGEDAG---RRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRP 600
            L +YK  EN  +AL +A+A G  +VNIGA+D+ +G P  +LGL WQ+IR+ L AQINL  CP L+ L++ GET     ALP + +LLRWFN+HLR  G  RRV+NFS D+ D +CYT LLK++      P  L  + +    R   +RA  V+  A+ +     +R   IT      N+AFVA L N  P
Sbjct:  179 LSVYKTHENQTLALNSAKAIGCNIVNIGATDMCEGIPTLVLGLMWQVIRIGLFAQINLANCPGLVRLLEPGETLEDLMALPADQILLRWFNYHLREAGHPRRVTNFSGDIKDSECYTILLKQIA-----PRQLGIDTSALNERDLEKRAGKVLDNAEKMDCRKFVRARDITSGNPKLNLAFVANLFNMYP 363
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: A0A835YKZ4_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.020e-40
Identity = 79/186 (42.47%), Postives = 109/186 (58.60%), Query Frame = 1 
Query:   34 EPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLIN 591
            EPL +++ATEN N A+ A  A G  VVNIGA DI + +   +L L WQ+I+  + +Q++L  CP L  L + GE++A F ALPVE +LLRWFNH L W G+ RR+ N   DL+D +CY ALL+ L         L  E     R      + + A  LG+A +I   HIT      N+AF+AQL++
Sbjct:   91 EPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQLVS 276
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: A0A137P268_CONC2 (Uncharacterized protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P268_CONC2)

HSP 1 Score: 157 bits (396), Expect = 4.330e-40
Identity = 83/187 (44.39%), Postives = 115/187 (61.50%), Query Frame = 1 
Query:   40 LGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRP 600
            L  +K TEN N+ + +A+A G  VVNIG+ D+I+GR   ILGL WQ+I++ LLA+I++K  P+L  L++DGET   F  LP E +LLRWFN+HL+  G +RRV+NFS D+ DGQ YT LL +L+ N      L+  D     ++RA  V+  A  LG    + P  +       N+AFVA L N  P
Sbjct:  188 LNAFKMTENNNLVINSAKAIGCSVVNIGSKDLIEGREHLILGLIWQIIKIGLLAKIDIKYHPELYRLLEDGETLEDFLKLPAEHILLRWFNYHLKNAGWDRRVTNFSKDVKDGQNYTVLLNQLSPNQCSLAPLKENDL----YQRAEMVLQNADTLGCRKYLSPKTLVGGNPKLNLAFVAHLFNTHP 370
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: UPI0019033340 (calponin homology domain-containing protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019033340)

HSP 1 Score: 156 bits (395), Expect = 5.660e-40
Identity = 84/196 (42.86%), Postives = 117/196 (59.69%), Query Frame = 1 
Query:   13 INVPSGSEPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRP 600
            +N+P   +PL  +K TEN NV +T+A+A G  VVNIG+SDI +GR   ILGL WQ+IR  LL++I+LK  P+L  L++DGET      LP + +LLRWFN+HL+  G  RRV+NFS D+ DG+ YT LL +L         L+  D      +RA  ++  A+ +G    + P  +       N+AFVA L N  P
Sbjct:  174 LNLPQPRKPLNAFKITENNNVVITSAKAIGCSVVNIGSSDISEGREHLILGLIWQIIRRGLLSRISLKEHPELYRLLEDGETIEELLKLPPDQILLRWFNYHLKAAGWHRRVNNFSKDVKDGENYTVLLNQLKPAECSRAPLQIRDL----TQRAIQILDNAEKIGCRKYLTPPALVAGNPRLNLAFVANLFNTHP 365
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: A0A5M3ME32_CONPW (Fimbrin n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3ME32_CONPW)

HSP 1 Score: 156 bits (394), Expect = 8.230e-40
Identity = 84/196 (42.86%), Postives = 119/196 (60.71%), Query Frame = 1 
Query:   13 INVPSGSEPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRP 600
            +N+PSG +PL  ++ TEN N+ +T+A+A G  VVNIG+SDI +GR   ILGL WQ+IR  LLAQ+++K  P+L  L ++GET      L  + +LLRWFN+HL+  G  RRV+NFS D+SD + YT LL +L  +      L+  D  +R    A  V+  A A+G    + P+ +       N+AFVA L N  P
Sbjct:  172 LNLPSGKKPLNNFQMTENNNIVITSAKAIGCSVVNIGSSDIAEGREHLILGLIWQIIRKGLLAQVDIKLHPELYRLCEEGETIDDLLRLTPDQILLRWFNYHLKAAGWNRRVNNFSRDVSDAENYTVLLNQLKPDVCSRAPLQTRDVRQR----AEQVLDNAAAIGCRKYLTPSSLVAGNPRLNLAFVANLFNTWP 363
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: A0A1D8PPY8_CANAL (Fimbrin n=8 Tax=Candida TaxID=1535326 RepID=A0A1D8PPY8_CANAL)

HSP 1 Score: 155 bits (392), Expect = 1.580e-39
Identity = 80/196 (40.82%), Postives = 119/196 (60.71%), Query Frame = 1 
Query:   13 INVPSGSEPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRP 600
            +N+P   + L  ++ +EN N+ + +A+A G  VVN+ + DIIDG+   ILGL WQ+IR  LL+++++K  P+L  L++D ET   F  LP E +LLRWFN+HL+  GS+RRV+NFS D+SDG+ YT LL +L   + +   L+  D       RA  V++ A  +G    + PN +       N+AFVA L N  P
Sbjct:  205 LNLPKPKKTLNNFQMSENANIVINSAKAIGCVVVNVHSEDIIDGKEHLILGLIWQIIRRGLLSKVDIKYHPELYRLLEDDETLEQFLRLPPEQILLRWFNYHLKNAGSQRRVTNFSKDVSDGENYTVLLHQLQPEYCDLSPLKTSDL----LTRAEQVLTNADKIGCRKYLTPNSLVSGNPKLNLAFVAHLFNTHP 396
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: A0A1Q3E9V7_LENED (Ca2+-binding actin-bundling protein n=3 Tax=Omphalotaceae TaxID=72117 RepID=A0A1Q3E9V7_LENED)

HSP 1 Score: 155 bits (392), Expect = 1.620e-39
Identity = 85/196 (43.37%), Postives = 118/196 (60.20%), Query Frame = 1 
Query:   13 INVPSGSEPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRP 600
            +N PSG +PL  ++ TEN N+ +T+A+A G  VVNIG+SDI +GR   ILGL WQ+IR  LLAQ+++K  P+L  L +DGET      L  + +LLRWFN+HL+  G +RRV+NFS D+SDG+ YT LL +L         L+  D   R    A  V+  A ++G    + P+ +       N+AFVA L N  P
Sbjct:  172 LNKPSGRKPLNAFQITENNNIVITSAKAIGCSVVNIGSSDIAEGREHLILGLIWQIIRRGLLAQVDIKLHPELYRLCEDGETIDDLLRLTPDQILLRWFNYHLKAAGWKRRVNNFSRDVSDGENYTVLLHQLQPASCSLSPLQTPDLRTR----AEQVLQNADSIGCRKYLTPSSLVSGNPRLNLAFVANLFNTYP 363
[Close]
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Match: A0A066VK39_TILAU (Putative SAC6-actin filament bundling protein, fimbrin n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VK39_TILAU)

HSP 1 Score: 155 bits (391), Expect = 1.650e-39
Identity = 83/196 (42.35%), Postives = 117/196 (59.69%), Query Frame = 1 
Query:   13 INVPSGSEPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRPASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLLRWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGEDAGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRP 600
            +N+  G++P   ++ TEN N+ +T+A+A G  VVNIG  D+IDGR   ILGL WQ+IR  LL++I+LK  P+L  L++D ET   F  LP + +LLRWFN+HL+     RRV+NFS D+SDG+ YT LL +L     +   L+  D      +RA  V+  A A+G    + P  +       N+AFVA L N  P
Sbjct:  174 LNIGKGTKPPNAFQMTENNNIVITSAKAIGCSVVNIGPQDLIDGREHLILGLIWQIIRRGLLSKIDLKNHPELYRLLEDDETLEDFLRLPPDQILLRWFNYHLKAANWNRRVNNFSKDVSDGENYTVLLSQLKPESCDRRPLQERDP----HQRAEMVLQRADAIGCRKYLTPGAMVAGNPKLNLAFVAHLFNTWP 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4001.10375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJH8_ECTSI9.900e-12368.55Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH8... [more]
A0A812VU38_SYMMI1.750e-4445.79FIM3 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A0D2U007_CAPO31.190e-4043.68Fimbrin n=1 Tax=Capsaspora owczarzaki (strain ATCC... [more]
A0A835YKZ4_9STRA3.020e-4042.47Calponin homology domain-containing protein n=1 Ta... [more]
A0A137P268_CONC24.330e-4044.39Uncharacterized protein n=1 Tax=Conidiobolus coron... [more]
UPI00190333405.660e-4042.86calponin homology domain-containing protein n=1 Ta... [more]
A0A5M3ME32_CONPW8.230e-4042.86Fimbrin n=1 Tax=Coniophora puteana (strain RWD-64-... [more]
A0A1D8PPY8_CANAL1.580e-3940.82Fimbrin n=8 Tax=Candida TaxID=1535326 RepID=A0A1D8... [more]
A0A1Q3E9V7_LENED1.620e-3943.37Ca2+-binding actin-bundling protein n=3 Tax=Omphal... [more]
A0A066VK39_TILAU1.650e-3942.35Putative SAC6-actin filament bundling protein, fim... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4001contigH-paniculata_contig4001:13012..16603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.5
Seed ortholog evalue1.7e-103
Seed eggNOG ortholog2880.D7FJH8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin filament network formation
EggNOG OGsCOG5069@1,KOG0046@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size846
Cds size846
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4001.10375.1prot_H-paniculata_contig4001.10375.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4001 13012..16603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.2024496-CDS-H-paniculata_contig4001:13011..132091622930226.2024496-CDS-H-paniculata_contig4001:13011..13209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 13012..13209 -
1691481199.2984195-CDS-H-paniculata_contig4001:13011..132091691481199.2984195-CDS-H-paniculata_contig4001:13011..13209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 13012..13209 -
1622930226.2234437-CDS-H-paniculata_contig4001:13850..139161622930226.2234437-CDS-H-paniculata_contig4001:13850..13916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 13851..13916 -
1691481199.3083088-CDS-H-paniculata_contig4001:13850..139161691481199.3083088-CDS-H-paniculata_contig4001:13850..13916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 13851..13916 -
1622930226.2413201-CDS-H-paniculata_contig4001:14412..145921622930226.2413201-CDS-H-paniculata_contig4001:14412..14592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 14413..14592 -
1691481199.3169053-CDS-H-paniculata_contig4001:14412..145921691481199.3169053-CDS-H-paniculata_contig4001:14412..14592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 14413..14592 -
1622930226.2688346-CDS-H-paniculata_contig4001:15302..153811622930226.2688346-CDS-H-paniculata_contig4001:15302..15381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 15303..15381 -
1691481199.3262994-CDS-H-paniculata_contig4001:15302..153811691481199.3262994-CDS-H-paniculata_contig4001:15302..15381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 15303..15381 -
1622930226.2829266-CDS-H-paniculata_contig4001:15819..159261622930226.2829266-CDS-H-paniculata_contig4001:15819..15926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 15820..15926 -
1691481199.337906-CDS-H-paniculata_contig4001:15819..159261691481199.337906-CDS-H-paniculata_contig4001:15819..15926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 15820..15926 -
1622930226.3138535-CDS-H-paniculata_contig4001:16387..166031622930226.3138535-CDS-H-paniculata_contig4001:16387..16603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 16388..16603 -
1691481199.3483682-CDS-H-paniculata_contig4001:16387..166031691481199.3483682-CDS-H-paniculata_contig4001:16387..16603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 16388..16603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4001.10375.1

>prot_H-paniculata_contig4001.10375.1 ID=prot_H-paniculata_contig4001.10375.1|Name=mRNA_H-paniculata_contig4001.10375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
ADAKINVPSGSEPLGLYKATENLNVALTAAEAAGLQVVNIGASDIIDGRP
ASILGLSWQLIRVHLLAQINLKRCPDLIHLMKDGETKATFFALPVEDVLL
RWFNHHLRWGGSERRVSNFSDDLSDGQCYTALLKELNDNFQEPEYLEGED
AGRRRFRRACSVISGAQALGLAPLIRPNHITRKAHLYNIAFVAQLINRRP
RIHRERLHLPAATSMQAWYRMLRTQRVTVPLIEQRRASATTIARAWRQLA
VSKRQERAATALQAWRRGVKGREMAIAMRWL*
back to top

mRNA from alignment at H-paniculata_contig4001:13012..16603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4001.10375.1 ID=mRNA_H-paniculata_contig4001.10375.1|Name=mRNA_H-paniculata_contig4001.10375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3592bp|location=Sequence derived from alignment at H-paniculata_contig4001:13012..16603- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGATGCCAAGATAAATGTGCCCTCGGGGTCTGAGCCGCTTGGACTGTA
CAAAGCTACGGAGAATCTTAACGTCGCTCTCACAGCTGCGGAGGCGGCAG
GACTTCAGGTGGTGAACATTGGGGCGTCTGACATCATCGACGGACGACCG
GCGAGTATCCTTGGGCTGTCGTGGCAGCTCATTCGCGTGCACCTTCTCGC
CCAGATTAACCTCAAGGTGAGTGGTTTGAAAAGAATAATTACACTGGTGG
AGTATTGGGGTGTGCATGTGCTAGTGCTGGTGTGTTGGAGCCGGTTTCAT
ACGGTTTGTCGTTGTTGGTCGTTGAGTCAGTATCCTCCTCGGCCATTGGC
CGGTATGCTTGTGAGCTACTAGTCAATCAGATGAGCTAAGGATGATGTTT
ATAATTCCATAATAGCAGTTTGTGTCAAATAATGCATCGCGAGTGTGTGT
CGTGTGTACCTTTTGGCAATTCGTGACAGCATATATCACTGCGGTTCATG
ACTCTCCTGGATCAATCTAAATTTTTATTAAAATGCTGTTTTCTTTTTGA
CTGACAAACAGTAGGTCGTTTTTTCACACGTCTTTATTTTTTTTCGTTTT
TTTTTCGGAGTATTTTTTGACAAGGCTAGCCTCTTTTTGTTACTGTTTGT
TCTGATAATCTTTGATATAAATTGTAGCGATGCCCGGACCTCATCCACCT
CATGAAGGATGGCGAAACAAAGGCTACGTTTTTTGCCCTGCCGGTGGAGG
ATGTCCTACTGCGATGGTTCAACCATCACCTCAGGTAATTTTTTTTCGGC
GGCGGGGGGCGCGGGGGCGTGTTCGTGTAAGTAGTCCATTGTACCCTTGT
TGGGGTCTTGCGGCTGGCCTCAAATTACAGCGTGTACGCTTACCAGCGAA
AGTGTAGTATATGTATTGGTGTACCCCTTGTTGTTGTCCTTTCCCTGTTT
GTGTTCGTTATATGGGAAGTGCTCGCCGGAAACCTTTGAAATTCTGTTTA
ATTCAAAAAGGGGTCTGTTCTGCAGGTAGCATGGGTGGGAACCACGAATG
GATCATGACGTCCTCGCGGTCAGAGAGAGGGTGAAGATCATGAATATAGT
TCCAAGGGATCAAGTAAACGGTTGTTGCGGCGTTCGCACGTACGTATGCG
TGTGTTGATAGTAAAGTAACATCGCTGTCGGCGTGCTGCACCTTTTCGTG
TCCTGTGTAACGACAATAAAAGGTGGGGGGGGAGCGAGCGGCGTGTATCG
AACTTCTCCGACGACCTCTCTGATGGACAATGCTACACCGCGCTCCTGAA
GGTACATTGCAGTATAGTCAGTCAATGGAGGTTGCTTGCATGCTTGCACG
CTGGCGGGTGACATTTCGTAGTTGACATGATTTGTAGGCTGCAATGGATG
AAGCAGTCAAGTAGAAGGGACCTTTGGTTTGATCTGAAGCCCTCGCTTCG
TGGAGTATAGGCCAATAATTTGTTTAGCCCCTTTCGATCAAAATTGCAGT
ATGTATGTGTTTTTGGTACATGTGCCATGAAAACCTCAACGGTTTGTCTA
TAAATGAAGCAGGAATGATGACTGTCAACTTTATTTGTTTCTCCTCGGTG
TCAGTACCGATTATCAATGTATTGGAGGTGGTCACATGTTACAAATAAGA
GGATTTTTTTTTTTTTTTTGCATGGATCAGACGTTCTATGCGTCTCGCCG
TTTTTTGTAGTTTTTGTTTTTACTTGATGTAACATCATATTGTCGTTATG
CTAGTAATTTTCCTATTGCGTACTGTAGTTCGCTTTTTGGCTCAAATACT
TTGCCATGCCCAATGAAATTCCAGTTTCTTGTTTCCTTTGGTTCTCCTTT
TGCCCTATATACCCATTTGTGCTATATAACAGGAAAGATGAAGACCGCGA
GGTCGTTGTCCATTAATTATTGGAATAAGACATGTCTCGGAACCGAACAC
AAAAATATTGCGCAGTTCAGTCCCACGTATTTTTTGTTTTCACTTTGTTT
CAATGACATAGGAGCTGAACGACAACTTCCAGGAGCCAGAGTATCTTGAG
GGCGAAGACGCAGGACGGAGACGCTTCAGGAGGGCCTGCAGTGTCATATC
GGGGGCTCAGGCACTCGGCCTCGCTCCGCTGATTCGCCCGAATCACATCA
CGCGAAAGGCTCACCTGTACAACATTGCTTTCGTCGCGCAGGTAGGGTGG
CACGTGTGTTGTGCAACTGGAACACATTTAGGAAATGCAGCGAAGCCGTC
CTCCAGTTCACCTACGGGCCTATGCCAAGTATCTGTTGGTGCTGTGCTAG
ACCGGCTATTCTGAGCAGCGGCGGGTCCTTCCCCCGGTGTTCATATCACG
CTTGTTAATCTTCTCTCTTTCTTTCCTGAAGCTCAAAGGGTTGGTCTTTT
TCCCAGAAGCATTGTCTAGACCCGGATTTATGCTATTTGATCATTTGATT
TTGCTGAGCGCCTCGGAAGGCGTTAACTCTTGTGTCGTGCTGCGCCTGCC
TGTAACGGCGACAACTTTTTGTGTGTCCTTCTTGTGTTCGTTTGATCGTG
TCTTGTCACCTGTCGTTATTGTTATCGTTTTATGAAGACAATTTTCTTTC
TACATGTGTTTTATCTGTTGGTCATGATATTGGAATACAATTTTACTGTG
CTGTCCGTTTTGTAAACTGTTATTGTTTTTGATACAGCTCATTAACAGAC
GTCCGCGCATTCATCGGGAGCGGCTGCACCTACCGGCGGCGACCTCCATG
CAGGTGCTATTTTGTACAACCATTTAAGAATGGTCATTGGATACAAGAAA
CGACCCCTGGCGTGTAATGAAAGAATACAGTTATTGATGCTCTGACGTTT
GCTTGAACAGTCGTGCTGACAGTGGCCATACAACCACGGTTGTTGTGTAG
GCGTTGCTGGCCACCTCCCCTACGACAAACTTTGAACATCGTTGGCGATC
TTTGAGCCCCGTTTGCTGTTGCGTGACATGAGTCGTACGTATTCTGGTGA
AACCGCATTACCGAGCGAAGATTAATTCGGTCAAGTCGTCTAAGCTTTGT
TGAAGGAGACGAATGTACATTTATCTACCTGTAATTTGCAAACCACATAA
CTTGAGCATGATTTGTACCTGTTCTGGAGACTGACATAATACTAAGCAGT
ACATTTTTCACAGATTTGCAAACAAGACTGTGTGTTTCTTTCCAGAGGGA
TTAGTGCATGGATATTGCCCTTTTTGTTGGTTTCAGCTTTCACTCCCATG
TCCTCTACACAGGTCAGTGAGACATGAAATAGTTCTCGTATTGTTTGCGC
TCCAAGTGGCGCCATCAATCCTATTACGGTACTTACTATTTCCCTGTCGA
TGAATGTACTCACCTTGCGTGTACCGTGATTTCGAGACATACAGGCGTGG
TATCGTATGCTTCGGACGCAACGCGTAACAGTCCCATTGATAGAGCAAAG
GAGAGCCTCTGCGACTACGATAGCGAGGGCATGGCGACAGCTTGCCGTGT
CCAAGCGCCAGGAGAGGGCGGCGACTGCGCTGCAGGCGTGGAGGAGGGGG
GTGAAAGGGAGGGAGATGGCTATCGCTATGAGGTGGTTATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4001:13012..16603-

>mRNA_H-paniculata_contig4001.10375.1 ID=mRNA_H-paniculata_contig4001.10375.1|Name=mRNA_H-paniculata_contig4001.10375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig4001:13012..16603- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGATGCCAAGATAAATGTGCCCTCGGGGTCTGAGCCGCTTGGACTGTA
CAAAGCTACGGAGAATCTTAACGTCGCTCTCACAGCTGCGGAGGCGGCAG
GACTTCAGGTGGTGAACATTGGGGCGTCTGACATCATCGACGGACGACCG
GCGAGTATCCTTGGGCTGTCGTGGCAGCTCATTCGCGTGCACCTTCTCGC
CCAGATTAACCTCAAGGCCGATGCCAAGATAAATGTGCCCTCGGGGTCTG
AGCCGCTTGGACTGTACAAAGCTACGGAGAATCTTAACGTCGCTCTCACA
GCTGCGGAGGCGGCAGGACTTCAGGTGGTGAACATTGGGGCGTCTGACAT
CATCGACGGACGACCGGCGAGTATCCTTGGGCTGTCGTGGCAGCTCATTC
GCGTGCACCTTCTCGCCCAGATTAACCTCAAGCGATGCCCGGACCTCATC
CACCTCATGAAGGATGGCGAAACAAAGGCTACGTTTTTTGCCCTGCCGGT
GGAGGATGTCCTACTGCGATGGTTCAACCATCACCTCAGCGATGCCCGGA
CCTCATCCACCTCATGAAGGATGGCGAAACAAAGGCTACGTTTTTTGCCC
TGCCGGTGGAGGATGTCCTACTGCGATGGTTCAACCATCACCTCAGGTGG
GGGGGGAGCGAGCGGCGTGTATCGAACTTCTCCGACGACCTCTCTGATGG
ACAATGCTACACCGCGCTCCTGAAGGTGGGGGGGGAGCGAGCGGCGTGTA
TCGAACTTCTCCGACGACCTCTCTGATGGACAATGCTACACCGCGCTCCT
GAAGGAGCTGAACGACAACTTCCAGGAGCCAGAGTATCTTGAGGGCGAAG
ACGCAGGACGGAGACGCTTCAGGAGGGCCTGCAGTGTCATATCGGGGGCT
CAGGCACTCGGCCTCGCTCCGCTGATTCGCCCGAATCACATCACGCGAAA
GGCTCACCTGTACAACATTGCTTTCGTCGCGCAGGAGCTGAACGACAACT
TCCAGGAGCCAGAGTATCTTGAGGGCGAAGACGCAGGACGGAGACGCTTC
AGGAGGGCCTGCAGTGTCATATCGGGGGCTCAGGCACTCGGCCTCGCTCC
GCTGATTCGCCCGAATCACATCACGCGAAAGGCTCACCTGTACAACATTG
CTTTCGTCGCGCAGCTCATTAACAGACGTCCGCGCATTCATCGGGAGCGG
CTGCACCTACCGGCGGCGACCTCCATGCAGCTCATTAACAGACGTCCGCG
CATTCATCGGGAGCGGCTGCACCTACCGGCGGCGACCTCCATGCAGGCGT
GGTATCGTATGCTTCGGACGCAACGCGTAACAGTCCCATTGATAGAGCAA
AGGAGAGCCTCTGCGACTACGATAGCGAGGGCATGGCGACAGCTTGCCGT
GTCCAAGCGCCAGGAGAGGGCGGCGACTGCGCTGCAGGCGTGGAGGAGGG
GGGTGAAAGGGAGGGAGATGGCTATCGCTATGAGGTGGTTATGAGCGTGG
TATCGTATGCTTCGGACGCAACGCGTAACAGTCCCATTGATAGAGCAAAG
GAGAGCCTCTGCGACTACGATAGCGAGGGCATGGCGACAGCTTGCCGTGT
CCAAGCGCCAGGAGAGGGCGGCGACTGCGCTGCAGGCGTGGAGGAGGGGG
GTGAAAGGGAGGGAGATGGCTATCGCTATGAGGTGGTTATGA
back to top