mRNA_H-paniculata_contig3995.10348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3995.10348.1
Unique NamemRNA_H-paniculata_contig3995.10348.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3995.10348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3995contigH-paniculata_contig3995:2960..4840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size356
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3995.10348.1prot_H-paniculata_contig3995.10348.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3995 2960..4840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.1249244-CDS-H-paniculata_contig3995:2959..30631622930222.1249244-CDS-H-paniculata_contig3995:2959..3063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 2960..3063 -
1691481197.4719708-CDS-H-paniculata_contig3995:2959..30631691481197.4719708-CDS-H-paniculata_contig3995:2959..3063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 2960..3063 -
1622930222.1384592-CDS-H-paniculata_contig3995:3519..36091622930222.1384592-CDS-H-paniculata_contig3995:3519..3609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 3520..3609 -
1691481197.4814436-CDS-H-paniculata_contig3995:3519..36091691481197.4814436-CDS-H-paniculata_contig3995:3519..3609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 3520..3609 -
1622930222.1559665-CDS-H-paniculata_contig3995:4065..41581622930222.1559665-CDS-H-paniculata_contig3995:4065..4158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 4066..4158 -
1691481197.4903672-CDS-H-paniculata_contig3995:4065..41581691481197.4903672-CDS-H-paniculata_contig3995:4065..4158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 4066..4158 -
1622930222.1738474-CDS-H-paniculata_contig3995:4773..48401622930222.1738474-CDS-H-paniculata_contig3995:4773..4840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 4774..4840 -
1691481197.5004478-CDS-H-paniculata_contig3995:4773..48401691481197.5004478-CDS-H-paniculata_contig3995:4773..4840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 4774..4840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3995.10348.1

>prot_H-paniculata_contig3995.10348.1 ID=prot_H-paniculata_contig3995.10348.1|Name=mRNA_H-paniculata_contig3995.10348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
YNYCGNDGDCCDGYECINFQCDFSVSCLAFGNPCNSDGDCCDGYGCSRIG
GERLCSDECGVETEICGDDTDRECCDGLSCENNSCAVPCIVESGECTTDA
ECCDGLECGSNGFVNCE*
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mRNA from alignment at H-paniculata_contig3995:2960..4840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3995.10348.1 ID=mRNA_H-paniculata_contig3995.10348.1|Name=mRNA_H-paniculata_contig3995.10348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1881bp|location=Sequence derived from alignment at H-paniculata_contig3995:2960..4840- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAACTATTGTGGCAATGATGGCGATTGCTGCGACGGCTACGAATGCAT
CAACTTCCAATGCGACTGTAAGTCTCGAAATAATTGGGTGTCGTGTTGTC
GTTCACAAGGTTGCTACTTGGTAATTGACAGTAGGCGTGGTTTTATTTCG
CTCAATGTACGGCGTGCTTTCTAATCCTAGTTCGCCCGTGCTGTTTTGAG
CTAGGCGCATTGCCGGGCACCGCTGCGTGCAATCTGACCACAGTCCACTG
CACACAAACGCTGGAGTACTGTACGAATGTGTGGGTCGTTTGCGCCAAAC
ACTATTGATTCTCGTATTGCTTCTATCGGAAAACGTTGCATCAGGTTTTG
GCATGATAATCGTCCAATTTCGTTTTACACCGTTGATGGGCATCTTTTTT
ATATTTACAATTGCGGTGGCATCAGTCGCAGTCGTCCTTTCTTGCTCCAC
AGGCGAGCGGACATTGCCTCACGATCGTTTTTCTGTACCTTCGCCACACT
TCGTGTTTTCGTGTCGGCTGTTTTTGCCTATTTCCCGTGTCGTGCTGGGT
CCGCGTGACCGCACATGCTGTCTACGTCCTAATGGGCGCTTCGAGTGGTG
GCAGGCCTCGATTACGTCATCAGTAGAGTGTGAAATTCAGCAAACAAACG
TTCTCTTGTTCTTGCGCCGTGCTATTTTTCAGTTTCTGTTTCCTGCCTGG
CTTTCGGGAACCCCTGCAATTCCGATGGTGACTGCTGCGACGGATACGGA
TGCTCCAGAATCGGTGGCGAGAGATGTGAGAGACCCTTCATCGAAGCAAC
GTCATATATTTTATTAACAAACACCTTATTTTCTCAAGGTGCCTGCCCAT
TTGACAGCGCAAACAATATGCCGACCAGTAGAGAAAAATGTTGCGTACTG
AATGCTTGCTAGGGTAATTGCCAGTGCAGCGAGAGACATGAGGCTCATCC
AAATCATGCGTACGTTTTGCTTGTGATCATCCACGTCAATCTTTTTCCTT
ATATTTCTCCCGTGTGACGCATCTTTGTGCAATCATTGGCAGCCTGGGGT
GGGATTACTGTCCGAATTTTGAGGACAAGCACTGGCCTTTTTCACGTAGT
AACAAATATGCGCAGGGTCATTACAGCAATGATATGTTTCGTTCAGTATC
TATACAGCCTTCGTAATCGTTTGAAATGTCAAGTTCTGGCGCCGTCCGCT
TTTCACGTTTGAATGTGTTCGTGCGTGGCAGTGTGCTCGGACGAGTGTGG
CGTGGAGACCGAGATCTGTGGCGACGACACGGATAGGGAATGTTGCGATG
GCTTGTCGTGCGAAAACAACTGTGCGTGGGAGTTGTGCAGAATACTATAT
ACAGTGGGGTGCATGAAGTTGTCGTAACAGTCGAGGAAAAATCGATCACA
CCAACTTGGTTTCCTAGCGCGCAGATGATGTCCAACACCAGGAAATGCGT
GCTAACGATCGACACAAACGATTTGGTCATCTCTAAGGCTCCAAAGTCTT
ATTTACGCTACCTGAATATCAAAACATTGTAACGCCAAGGTAGTCGAACA
TAGGGTATAGTACTGGACGTTTTTTTGTTTATGATCGGGCCAGAAAGCCC
TCGTCTTGTCGGAGCATCAAAGCCCAGCGTCGAAGGTCCAACCACAACGT
ATGCAAGGCGCAATGGTGCTTTGCCGTGCTCAAAAGGGCGTTTGACCACA
ATATGAGTTTATTATGCTGTATCTTTCATGCCTCCTTCCCCGTCCCTTCT
CGTGTGCATTGTTTCCTGTGTTATCAGCGTGCGCCGTTCCCTGCATTGTT
GAATCCGGAGAGTGTACAACTGACGCGGAATGTTGTGACGGTCTCGAGTG
CGGAAGCAACGGCTTCGTGAATTGTGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3995:2960..4840-

>mRNA_H-paniculata_contig3995.10348.1 ID=mRNA_H-paniculata_contig3995.10348.1|Name=mRNA_H-paniculata_contig3995.10348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig3995:2960..4840- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAACTATTGTGGCAATGATGGCGATTGCTGCGACGGCTACGAATGCAT
CAACTTCCAATGCGACTTACAACTATTGTGGCAATGATGGCGATTGCTGC
GACGGCTACGAATGCATCAACTTCCAATGCGACTTTTCTGTTTCCTGCCT
GGCTTTCGGGAACCCCTGCAATTCCGATGGTGACTGCTGCGACGGATACG
GATGCTCCAGAATCGGTGGCGAGAGATTTTCTGTTTCCTGCCTGGCTTTC
GGGAACCCCTGCAATTCCGATGGTGACTGCTGCGACGGATACGGATGCTC
CAGAATCGGTGGCGAGAGATTGTGCTCGGACGAGTGTGGCGTGGAGACCG
AGATCTGTGGCGACGACACGGATAGGGAATGTTGCGATGGCTTGTCGTGC
GAAAACAACTTGTGCTCGGACGAGTGTGGCGTGGAGACCGAGATCTGTGG
CGACGACACGGATAGGGAATGTTGCGATGGCTTGTCGTGCGAAAACAACT
CGTGCGCCGTTCCCTGCATTGTTGAATCCGGAGAGTGTACAACTGACGCG
GAATGTTGTGACGGTCTCGAGTGCGGAAGCAACGGCTTCGTGAATTGTGA
GTGACGTGCGCCGTTCCCTGCATTGTTGAATCCGGAGAGTGTACAACTGA
CGCGGAATGTTGTGACGGTCTCGAGTGCGGAAGCAACGGCTTCGTGAATT
GTGAGTGA
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