mRNA_H-paniculata_contig39928.10344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39928.10344.1
Unique NamemRNA_H-paniculata_contig39928.10344.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A6H5L4N4_9PHAE (RNA cytidine acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N4_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.130e-57
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGTACG 312
            EHLDYEVIQSTNP FNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVK+LLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQG   G
Sbjct:  266 EHLDYEVIQSTNPAFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKRLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGAGVG 369
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A835Z409_9STRA (RNA cytidine acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z409_9STRA)

HSP 1 Score: 187 bits (474), Expect = 8.390e-53
Identity = 88/100 (88.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQG 300
            EH+DYEV+QS+NP FN+AVVRINVF+DHRQTIQYIQPHDS KL+HCELLA+DEAAAIPLPLVK LLGPYLVF+SSTVNGYEGTGRALSLKL+DQLRKQQG
Sbjct:  338 EHMDYEVLQSSNPAFNKAVVRINVFRDHRQTIQYIQPHDSNKLAHCELLAIDEAAAIPLPLVKALLGPYLVFMSSTVNGYEGTGRALSLKLVDQLRKQQG 437
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A7S1CCL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCL9_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.200e-48
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGTA 306
            EH+DYE IQSTNPDFN A+VR+NVF+ HRQTIQYIQP D++KL   EL+ VDEA AIPLP+VKKLLGPYLVFLSST+NGYEGTGR+LSLKLI QLR+QQ +A
Sbjct:  410 EHMDYEAIQSTNPDFNNAIVRVNVFRSHRQTIQYIQPQDADKLGQAELVVVDEAGAIPLPIVKKLLGPYLVFLSSTINGYEGTGRSLSLKLISQLRRQQSSA 511
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A2G8K170_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K170_STIJA)

HSP 1 Score: 167 bits (422), Expect = 3.340e-48
Identity = 76/101 (75.25%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGT 303
            EH+DYE++QSTNP+FN+AVVR+N+F++HRQTIQYI P DS+KLS  EL+ +DEAAAIPLPLVK LLGPYLVF+SST+NGYEGTGR+LSLKLI QLR+Q  T
Sbjct:  218 EHMDYELVQSTNPEFNKAVVRVNIFREHRQTIQYIHPGDSQKLSQAELVVIDEAAAIPLPLVKSLLGPYLVFMSSTINGYEGTGRSLSLKLIQQLRQQNAT 318
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A8K1FEC9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEC9_PYTOL)

HSP 1 Score: 173 bits (439), Expect = 4.490e-48
Identity = 80/102 (78.43%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGTA 306
            EHLDYE+IQSTNP+FN A+VR+N+F++HRQTIQYIQP+  EKL+  ELLA+DEAAAIPLPLVKKLLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG+A
Sbjct:  337 EHLDYEIIQSTNPEFNNAIVRVNIFREHRQTIQYIQPNHHEKLAQAELLAIDEAAAIPLPLVKKLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 438
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A2D4BXV5_PYTIN (RNA cytidine acetyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV5_PYTIN)

HSP 1 Score: 173 bits (439), Expect = 4.590e-48
Identity = 80/102 (78.43%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGTA 306
            EHLDYE+IQSTNP+FN A+VR+N+F++HRQTIQYIQP+  EKL+  ELLA+DEAAAIPLPLVKKLLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG+A
Sbjct:  703 EHLDYEIIQSTNPEFNNAIVRVNIFREHRQTIQYIQPNHHEKLAQAELLAIDEAAAIPLPLVKKLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 804
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A2G8L0L4_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L0L4_STIJA)

HSP 1 Score: 167 bits (422), Expect = 8.060e-48
Identity = 76/101 (75.25%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGT 303
            EH+DYE++QSTNP+FN+AVVR+N+F++HRQTIQYI P DS+KLS  EL+ +DEAAAIPLPLVK LLGPYLVF+SST+NGYEGTGR+LSLKLI QLR+Q  T
Sbjct:  337 EHMDYELVQSTNPEFNKAVVRVNIFREHRQTIQYIHPGDSQKLSQAELVVIDEAAAIPLPLVKSLLGPYLVFMSSTINGYEGTGRSLSLKLIQQLRQQNAT 437
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A1V9YCU8_9STRA (RNA cytidine acetyltransferase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YCU8_9STRA)

HSP 1 Score: 172 bits (437), Expect = 8.340e-48
Identity = 80/102 (78.43%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGTA 306
            EHLDYE+IQSTNP+FNRAVVR+N+F++HRQTIQYIQP+  EKL+  ELLA+DEAAAIPLP+VK LLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG+A
Sbjct:  335 EHLDYEIIQSTNPEFNRAVVRVNIFREHRQTIQYIQPNHHEKLAQAELLAIDEAAAIPLPVVKNLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 436
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: K3XCC4_GLOUD (RNA cytidine acetyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCC4_GLOUD)

HSP 1 Score: 172 bits (436), Expect = 1.140e-47
Identity = 79/102 (77.45%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGTA 306
            EHLDYE+IQSTNP+FN A+VR+N+F++HRQTIQYIQP+  EKL+  ELLA+DEAAAIPLP+VKKLLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG+A
Sbjct:  337 EHLDYEIIQSTNPEFNNAIVRVNIFREHRQTIQYIQPNHHEKLAQAELLAIDEAAAIPLPVVKKLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 438
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BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Match: A0A024U7Z3_9STRA (RNA cytidine acetyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7Z3_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.660e-47
Identity = 79/102 (77.45%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:    1 EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGTA 306
            EHLDYE+IQSTNP+FN AVVR+N+F++HRQTIQYIQP   EKL+  ELLA+DEAAAIPLP+VK+LLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG+A
Sbjct:  335 EHLDYEIIQSTNPEFNHAVVRVNIFREHRQTIQYIQPTHHEKLAQAELLAIDEAAAIPLPVVKQLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39928.10344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N4_9PHAE2.130e-5795.19RNA cytidine acetyltransferase n=2 Tax=Ectocarpus ... [more]
A0A835Z409_9STRA8.390e-5388.00RNA cytidine acetyltransferase n=1 Tax=Tribonema m... [more]
A0A7S1CCL9_9STRA2.200e-4877.45Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2G8K170_STIJA3.340e-4875.25Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A8K1FEC9_PYTOL4.490e-4878.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BXV5_PYTIN4.590e-4878.43RNA cytidine acetyltransferase n=1 Tax=Pythium ins... [more]
A0A2G8L0L4_STIJA8.060e-4875.25Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A1V9YCU8_9STRA8.340e-4878.43RNA cytidine acetyltransferase n=4 Tax=Saprolegnia... [more]
K3XCC4_GLOUD1.140e-4777.45RNA cytidine acetyltransferase n=1 Tax=Globisporan... [more]
A0A024U7Z3_9STRA1.660e-4777.45RNA cytidine acetyltransferase n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39928contigH-paniculata_contig39928:609..1482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue1.6e-49
Seed eggNOG ortholog2880.D7FZ70
Preferred nameNAT10
KEGG koko:K14521
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000154,GO:0000166,GO:0002097,GO:0002101,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0016070,GO:0016072,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022613,GO:0030490,GO:0030496,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051391,GO:0051392,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1904356,GO:1904357,GO:1904812,GO:1990882,GO:1990883,GO:1990884,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.tRNA N-acetyltransferase activity
EggNOG OGsCOG1444@1,KOG2036@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930221.4751499-CDS-H-paniculata_contig39928:608..8101622930221.4751499-CDS-H-paniculata_contig39928:608..810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39928 609..810 -
1691481197.1504252-CDS-H-paniculata_contig39928:608..8101691481197.1504252-CDS-H-paniculata_contig39928:608..810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39928 609..810 -
1622930221.489716-CDS-H-paniculata_contig39928:1363..14821622930221.489716-CDS-H-paniculata_contig39928:1363..1482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39928 1364..1482 -
1691481197.1643798-CDS-H-paniculata_contig39928:1363..14821691481197.1643798-CDS-H-paniculata_contig39928:1363..1482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39928 1364..1482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39928.10344.1prot_H-paniculata_contig39928.10344.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39928 609..1482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39928.10344.1

>prot_H-paniculata_contig39928.10344.1 ID=prot_H-paniculata_contig39928.10344.1|Name=mRNA_H-paniculata_contig39928.10344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
EHLDYEVIQSTNPDFNRAVVRINVFKDHRQTIQYIQPHDSEKLSHCELLA
VDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQG
TACGRV*
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mRNA from alignment at H-paniculata_contig39928:609..1482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39928.10344.1 ID=mRNA_H-paniculata_contig39928.10344.1|Name=mRNA_H-paniculata_contig39928.10344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=874bp|location=Sequence derived from alignment at H-paniculata_contig39928:609..1482- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCACTTGGACTACGAGGTGATACAGAGCACCAACCCCGACTTCAACAG
GGCCGTAGTGAGGATCAACGTGTTTAAGGACCACCGACAAACCATCCAAT
ACATCCAGCCGCATGACAGGTACTGCTTCGCATCGTTGCTGCTATAGCGG
GTCGTATGTACTACGGTAGAAGCGTCGCTTTTCTGGAGCCAACCATATTG
TGGGCATATGAGTGGTACCCCAAGGTTGAAGTAGATACCCTAGGTAAAAC
CATCATGGAGCCGCATTTCGGTCATCTAGGAAAGAGCGATTGGCCATCGG
AAACTCGCTCTGATAGGAACATAGCTCCGTCCTCCAGAGGACGTCTGGTC
GATGGTGTGGTCCCAAGTACGGTATGCAAACCATGAGTATACTCCACCCC
CTTACTTTGGTACATTTGTGGATAAATGTACATAGCTTAATGGAAGCATC
GGTAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAAAAAAAAAAAAA
TGTACATCGCTGAAATTCAAGGTCAGCTGTATAACCTCAATGTGCCTCCC
TGGATATCAATTATGCTCCATACGTGTAAAGGTGTCAAATGGCATGAGAA
GTCAGAAGTTATTTTGGCCACTTGACCCCCCCCACTCCCTACTCGGCACT
TTGAATAATTGCCCACCGACAGTGAGAAACTGTCACACTGTGAGCTCTTG
GCGGTGGATGAGGCCGCTGCCATACCCCTGCCGCTGGTGAAAAAGCTGCT
GGGCCCCTACCTGGTGTTCCTGTCGTCTACGGTCAACGGTTACGAGGGTA
CAGGGCGTGCGCTGAGCCTCAAGCTGATCGATCAGCTCAGGAAACAGCAA
GGTACTGCTTGTGGAAGGGTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig39928:609..1482-

>mRNA_H-paniculata_contig39928.10344.1 ID=mRNA_H-paniculata_contig39928.10344.1|Name=mRNA_H-paniculata_contig39928.10344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig39928:609..1482- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCACTTGGACTACGAGGTGATACAGAGCACCAACCCCGACTTCAACAG
GGCCGTAGTGAGGATCAACGTGTTTAAGGACCACCGACAAACCATCCAAT
ACATCCAGCCGCATGACAGGAGCACTTGGACTACGAGGTGATACAGAGCA
CCAACCCCGACTTCAACAGGGCCGTAGTGAGGATCAACGTGTTTAAGGAC
CACCGACAAACCATCCAATACATCCAGCCGCATGACAGTGAGAAACTGTC
ACACTGTGAGCTCTTGGCGGTGGATGAGGCCGCTGCCATACCCCTGCCGC
TGGTGAAAAAGCTGCTGGGCCCCTACCTGGTGTTCCTGTCGTCTACGGTC
AACGGTTACGAGGGTACAGGGCGTGCGCTGAGCCTCAAGCTGATCGATCA
GCTCAGGAAACAGCAAGGTACTGCTTGTGGAAGGGTTTAGTGAGAAACTG
TCACACTGTGAGCTCTTGGCGGTGGATGAGGCCGCTGCCATACCCCTGCC
GCTGGTGAAAAAGCTGCTGGGCCCCTACCTGGTGTTCCTGTCGTCTACGG
TCAACGGTTACGAGGGTACAGGGCGTGCGCTGAGCCTCAAGCTGATCGAT
CAGCTCAGGAAACAGCAAGGTACTGCTTGTGGAAGGGTTTAG
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