mRNA_H-paniculata_contig39864.10330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39864.10330.1
Unique NamemRNA_H-paniculata_contig39864.10330.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39864.10330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39864contigH-paniculata_contig39864:1538..1869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930219.6832623-UTR-H-paniculata_contig39864:1537..15481622930219.6832623-UTR-H-paniculata_contig39864:1537..1548Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39864 1538..1548 +
1691481196.4414454-UTR-H-paniculata_contig39864:1537..15481691481196.4414454-UTR-H-paniculata_contig39864:1537..1548Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39864 1538..1548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930219.6983075-CDS-H-paniculata_contig39864:1548..18691622930219.6983075-CDS-H-paniculata_contig39864:1548..1869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39864 1549..1869 +
1691481196.452393-CDS-H-paniculata_contig39864:1548..18691691481196.452393-CDS-H-paniculata_contig39864:1548..1869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39864 1549..1869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39864.10330.1prot_H-paniculata_contig39864.10330.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39864 1549..1869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39864.10330.1

>prot_H-paniculata_contig39864.10330.1 ID=prot_H-paniculata_contig39864.10330.1|Name=mRNA_H-paniculata_contig39864.10330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MVAVVEAGAALYRKYTTAAAEERSSSLDKEGADLVDVEMDHRGAMVGDAT
WGVDIMPTLGHRPTASSTVTLLQHIPSHHRPRRTTTSTITTTVIMNLASR
MSTPLSA
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mRNA from alignment at H-paniculata_contig39864:1538..1869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39864.10330.1 ID=mRNA_H-paniculata_contig39864.10330.1|Name=mRNA_H-paniculata_contig39864.10330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=332bp|location=Sequence derived from alignment at H-paniculata_contig39864:1538..1869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGTAGCAGGATGGTGGCCGTGGTCGAGGCTGGGGCGGCACTCTACAGG
AAGTACACCACAGCGGCCGCGGAGGAGCGCAGCAGCAGCCTCGACAAGGA
GGGAGCGGACCTGGTGGACGTGGAAATGGACCACCGTGGCGCAATGGTGG
GGGACGCAACATGGGGCGTGGACATCATGCCCACCCTCGGCCACCGCCCA
ACAGCCAGCAGTACAGTAACGCTTTTGCAGCACATCCCATCGCACCACCG
CCCGCGCCGTACTACGACGAGTACAATAACAACTACAGTAATTATGAATT
TAGCCAGCCGTATGAGCACACCGCTTTCAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig39864:1538..1869+

>mRNA_H-paniculata_contig39864.10330.1 ID=mRNA_H-paniculata_contig39864.10330.1|Name=mRNA_H-paniculata_contig39864.10330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig39864:1538..1869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCCGTGGTCGAGGCTGGGGCGGCACTCTACAGGAAGTACACCAC
AGCGGCCGCGGAGGAGCGCAGCAGCAGCCTCGACAAGGAGGGAGCGGACC
TGGTGGACGTGGAAATGGACCACCGTGGCGCAATGGTGGGGGACGCAACA
TGGGGCGTGGACATCATGCCCACCCTCGGCCACCGCCCAACAGCCAGCAG
TACAGTAACGCTTTTGCAGCACATCCCATCGCACCACCGCCCGCGCCGTA
CTACGACGAGTACAATAACAACTACAGTAATTATGAATTTAGCCAGCCGT
ATGAGCACACCGCTTTCAGCAATGGTGGCCGTGGTCGAGGCTGGGGCGGC
ACTCTACAGGAAGTACACCACAGCGGCCGCGGAGGAGCGCAGCAGCAGCC
TCGACAAGGAGGGAGCGGACCTGGTGGACGTGGAAATGGACCACCGTGGC
GCAATGGTGGGGGACGCAACATGGGGCGTGGACATCATGCCCACCCTCGG
CCACCGCCCAACAGCCAGCAGTACAGTAACGCTTTTGCAGCACATCCCAT
CGCACCACCGCCCGCGCCGTACTACGACGAGTACAATAACAACTACAGTA
ATTATGAATTTAGCCAGCCGTATGAGCACACCGCTTTCAGCA
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