mRNA_H-paniculata_contig3977.10313.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3977.10313.1
Unique NamemRNA_H-paniculata_contig3977.10313.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3977.10313.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.120e-24
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   25 DYVLRQKAVKGIPKSSEARSSYERAGRSTRLNGQDMLMPGTVQVEKVHTPG--VHHPKFGLLFLNDGSLIVYVGTANLGTDTAIELTWVQRF 294
            DY+L ++++ G   SSE R   + AGR  RL+  +M MP  VQVEKVHT G  VHHPKFGLLFL D SL+VYVGT NLG DTAI+ TWVQRF
Sbjct:  210 DYILFRESL-GKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRF 300
[Close]
BLAST of mRNA_H-paniculata_contig3977.10313.1 vs. uniprot
Match: B8CAD5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAD5_THAPS)

HSP 1 Score: 55.5 bits (132), Expect = 1.050e-6
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  175 GVHHPKFGLLFLNDGSLIVYVGTANLGTDTAIELTWVQRFNAR 303
            GVHHPKF LLF   GSL+V + T+NL + TA++ +WVQRF  +
Sbjct:  618 GVHHPKFFLLFEKRGSLVVIISTSNLTSPTALDASWVQRFEQK 660
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3977.10313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP39_ECTSI1.120e-2461.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8CAD5_THAPS1.050e-655.81Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3977contigH-paniculata_contig3977:7685..9235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog2880.D7FP39
Hectar predicted targeting categoryother localisation
EggNOG OGs2E1MX@1,2S8Y8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size309
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3977.10313.1prot_H-paniculata_contig3977.10313.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3977 7685..9235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930216.9481637-CDS-H-paniculata_contig3977:7684..77121622930216.9481637-CDS-H-paniculata_contig3977:7684..7712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 7685..7712 -
1691481195.3915472-CDS-H-paniculata_contig3977:7684..77121691481195.3915472-CDS-H-paniculata_contig3977:7684..7712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 7685..7712 -
1622930216.9697516-CDS-H-paniculata_contig3977:8236..83551622930216.9697516-CDS-H-paniculata_contig3977:8236..8355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 8237..8355 -
1691481195.4034073-CDS-H-paniculata_contig3977:8236..83551691481195.4034073-CDS-H-paniculata_contig3977:8236..8355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 8237..8355 -
1622930216.9947789-CDS-H-paniculata_contig3977:9073..92351622930216.9947789-CDS-H-paniculata_contig3977:9073..9235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 9074..9235 -
1691481195.4136515-CDS-H-paniculata_contig3977:9073..92351691481195.4136515-CDS-H-paniculata_contig3977:9073..9235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 9074..9235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3977.10313.1

>prot_H-paniculata_contig3977.10313.1 ID=prot_H-paniculata_contig3977.10313.1|Name=mRNA_H-paniculata_contig3977.10313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
ESGGRDLGDYVLRQKAVKGIPKSSEARSSYERAGRSTRLNGQDMLMPGTV
QVEKVHTPGVHHPKFGLLFLNDGSLIVYVGTANLGTDTAIELTWVQRFNA
RRP
back to top

mRNA from alignment at H-paniculata_contig3977:7685..9235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3977.10313.1 ID=mRNA_H-paniculata_contig3977.10313.1|Name=mRNA_H-paniculata_contig3977.10313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1551bp|location=Sequence derived from alignment at H-paniculata_contig3977:7685..9235- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGCGGTGGTCGAGATTTGGGCGACTACGTCCTGCGGCAGAAAGCGGT
GAAGGGGATACCAAAGTCGTCCGAGGCGAGAAGTAGCTACGAGAGGGCGG
GGCGATCGACTCGACTGAATGGGCAGGACATGCTAATGCCGGGTACGGTT
CAAGTGGAGAAGGTGAGCAATCAGACCGAAGAGAGATGGAGCAACAAGCT
AAATCATTAAGCGAGACATTTTTTACTGTAAATACAGCCGGTCAATCGGG
GCTGGGGGGGCGGAGGGGCGGAGGGATCCTCATGTTTTGCATTCAGTAGT
TGTTAGACCGTTGATCACGCGTCCTCGAGAGGACGGAGTTTTGTTCTTAT
TAGAGCCAGTTCTGATTTGTTTGACCTACGTGATCTACCTCAACGCTTGC
TTGTTCAGATCAATTTCTATTCCTGGAACCGCCACCGCCTTCTTTTCGCA
GTCCCAAGGTTCAAACGCCTCTCAATCGCATCCTTTGATGGTCTCAAATT
CACTCACATGACTTTTTTCTCTCTTTTTCATATGGGAGGCATTCTCCCAC
CATGTGAATTCGGTCCTCGAACGCACTACCGCACTACCGCACTTACATTT
GAATATCTCGTCGCCTTCCTCGCCTATTATGTGTTTGTTTGCGGGGCGAA
GGGCTTCTGAAATTATGGTTAACAATTTTCGGTTACGTTGTCCTGCTATG
AAAAACGTGCTTGTATAGTGTGTGATAGTGCTTCTCAAAAGAAGTGGAGT
AATTTTTCACCACAGCATTACACTAGTACGTATGTAGCTCGCCCACTCGC
GCTTTCCTTGTCCTACACTCCCCAATTCCCTTCATAAGTATATATATATA
TATGTATATATAATTAATATTGCTTCGCAGGTTCACACGCCTGGTGTGCA
CCATCCCAAGTTCGGGCTGTTATTTCTCAACGACGGGTCTTTGATAGTGT
ACGTGGGGACAGCAAACCTAGGAACGGACACTGCGATTGAACTCACGTGG
TGAGTTAAGTCACTTGCGTGAGCATTTCGGCGAATTAACATTTTTTTAAG
ACTTGAGCATGTAGGTTATGTACCTGTATGTGAGGAGATGGGAAGTGCGG
GTGCACCCATCTCATCGCCCATGCCTGTTTTCGTTTTTGGTTTGTTTCAT
TAGAGCACGAAAATTTGCACCATGCAATCAATGGTTTTAATGTACAGTGG
TAAACGGAACCTTGTCGACGTGTGTTTCAGCGTGGCTGCATACCCGAAGC
ATGCATTTGTCTAGTGACTTTTCTTCCCTGGGGGGGGGGCGACCTAACGA
ACTACTCTGTGGACGCTTCAGGATACATGTGGAGAAGCGCAAGCGCAATA
GAGCAAGATCCATCGTATTGCGTCGGGCAGCGCGTTGCATGTGATCGTAC
ATACCAGCCATATCGAATTTCGAACTCATGTATCACTCTTCGCTAGAGCT
CTATGTGTACAACTATTGTCAACATAGCGACGTTCGAAACTCCTTCTCGT
GTGGTTTGCGCTGATGAAAATAGGGTGCAAAGGTTCAACGCGAGGCGCCC
C
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3977:7685..9235-

>mRNA_H-paniculata_contig3977.10313.1 ID=mRNA_H-paniculata_contig3977.10313.1|Name=mRNA_H-paniculata_contig3977.10313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig3977:7685..9235- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGCGGTGGTCGAGATTTGGGCGACTACGTCCTGCGGCAGAAAGCGGT
GAAGGGGATACCAAAGTCGTCCGAGGCGAGAAGTAGCTACGAGAGGGCGG
GGCGATCGACTCGACTGAATGGGCAGGACATGCTAATGCCGGGTACGGTT
CAAGTGGAGAAGGAGAGCGGTGGTCGAGATTTGGGCGACTACGTCCTGCG
GCAGAAAGCGGTGAAGGGGATACCAAAGTCGTCCGAGGCGAGAAGTAGCT
ACGAGAGGGCGGGGCGATCGACTCGACTGAATGGGCAGGACATGCTAATG
CCGGGTACGGTTCAAGTGGAGAAGGTTCACACGCCTGGTGTGCACCATCC
CAAGTTCGGGCTGTTATTTCTCAACGACGGGTCTTTGATAGTGTACGTGG
GGACAGCAAACCTAGGAACGGACACTGCGATTGAACTCACGTGGTTCACA
CGCCTGGTGTGCACCATCCCAAGTTCGGGCTGTTATTTCTCAACGACGGG
TCTTTGATAGTGTACGTGGGGACAGCAAACCTAGGAACGGACACTGCGAT
TGAACTCACGTGGGTGCAAAGGTTCAACGCGAGGCGCCCCGGTGCAAAGG
TTCAACGCGAGGCGCCCC
back to top