mRNA_H-paniculata_contig394.10241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig394.10241.1 vs. uniprot
Match: A0A6H5JB67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB67_9PHAE) HSP 1 Score: 336 bits (861), Expect = 8.260e-103 Identity = 221/528 (41.86%), Postives = 284/528 (53.79%), Query Frame = 1
Query: 16 EQARGLFSELKRVARDARTTFSAADQVESCWRRPTRLDRPRIDPKTWYAGKMVQTHKYKS-VDVCLEDRDLETLNELPRRYVRLASISANPSAAGCSPAGPSVD------ISVRRND-----------TPVDVVFSPASRRELAHIATRTDAIRRAWNDPITMTEELVRLKMMREEKTRGRPEFTVSFPAVCGEATKRLCFGNIGISAAAERQAQPQARPRLRCRRLTKQH-------ITEKNR-RTGRLQSRPSPF--SPSSVSDIQLGGLQQRPCSSHHLEHITNDT----------GRRRN----------IVIRGGCTTAPAAAVFPALEAAQLNLVCKAMAYDRCVASAGDCIDHGAAAFRTAQTYSEQQIAFAETTAKLGPDRPPRAGYSDWRGRPIVGVQSATLDVVEAMDAWANEW-VATRPIAAYPGRDETRCEDGDCI-------IGATAPPFLWEGTPLVLTIAGQTEKLVGSMPELNEWYGPSFPTRLNPFCLVYPIVDRPRTPCSASVKTFVNGK 1431
+Q++GL E+KR + A TTF D+VES WRRPTRLD+ +IDP W+ G++VQ+HK VDV ED D E L+ + ++VRLA +G D ++ RRN P ++V S A RRELAHIA T ++R W P+ +++E+ RL+M+ E K R RPE+ SFP V ATKRL FG G++ R+ + A + T+ H + + +R R +QS PS P +V +Q R T+D G+RR+ AL AAQ LV A+AYDRCVA DC+D G AAFR A+TYSEQQ AF E+TA LGP +P RAGY DWRG P+VG+QSATLDVVEAMD WA EW VA G D E+G + + APPFLWEG+PLV T+ GQ+ KLV PEL EWYGP FP NPF L YP+ DRP TP SA V+ +VNG+
Sbjct: 249 QQSQGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRVVQSHKGGDRVDVVFEDGDGERLSGISTKHVRLAPPXXXXXXXXLVSSGRDDDYVTAAGVTGRRNSCDRRPSCAPTPAPTELVCS-AIRRELAHIACATKSLRCTWEVPVPISQEMARLRMLEERKMRSRPEWRGSFPLVDFSATKRLPFGAGGMARTVVRKVKNTAASAVSAVLATRDHQLQAQSTVRDDSRTRLRTVQSSPSSSLKMPMTVPQVQRDENDDRDLGQGDRCTSTDDNTVKETNARSAGKRRSSXXXXXXXXXXXXXXXXXXXXXXXXXTALLAAQAKLVSAAVAYDRCVAGVRDCLDRGCAAFRLARTYSEQQKAFEESTATLGPAQPARAGYKDWRGSPVVGLQSATLDVVEAMDDWAAEWAVAKGGKTDAGGGDNAFAEEGVVLKDGAVEEVAVAAPPFLWEGSPLVSTVIGQSAKLVAGAPELKEWYGPGFPIERNPFFLAYPVDDRPVTPRSALVRAWVNGE 775
BLAST of mRNA_H-paniculata_contig394.10241.1 vs. uniprot
Match: D8LCG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG8_ECTSI) HSP 1 Score: 336 bits (861), Expect = 4.310e-102 Identity = 227/523 (43.40%), Postives = 283/523 (54.11%), Query Frame = 1
Query: 16 EQARGLFSELKRVARDARTTFSAADQVESCWRRPTRLDRPRIDPKTWYAGKMVQTHKYKS-VDVCLEDRDLETLNELPRRYVRLAS---------------ISANPSAAGCSPAGPSVDI--SVRRNDTPVDVVFSPASRRELAHIATRTDAIRRAWNDPITMTEELVRLKMMREEKTRGRPEFTVSFPAVCGEATKRLCFGNIGISAAAERQAQPQARPRL------RCRRLTKQHITEKNRRTGRLQSRPSPFS----PSSV------SDIQLGGLQQRPCSSHH----LEHITNDTGRRRNIVIRGGCTTAPAAAVFP---ALEAAQLNLVCKAMAYDRCVASAGDCIDHGAAAFRTAQTYSEQQIAFAETTAKLGPDRPPRAGYSDWRGRPIVGVQSATLDVVEAMDAWANEWVATRPIAAYP---GRDETRCEDGDCI-------IGATAPPFLWEGTPLVLTIAGQTEKLVGSMPELNEWYGPSFPTRLNPFCLVYPIVDRPRTPCSASVKTFVNGK 1431
+Q+RGL E+KR + A TTF D+VES WRRPTRLD+ +IDP W+ G++VQ+HK VDV ED D E L+ + ++VRLA AAG S S D S P D + ASR ELAHIA T +R W DP+ +++E+ RL+M+ E K RGRPE+ SFP V ATKRL FG G++ R+A+ A R R+L Q + RT + SP S P++V +I Q C+S E G+RR+ AL AQ LV A+AYDR VA A DC+D G AAFR A+TYSEQQ AF E+TA LGP +P RAGY+DWRG P+VG+QSATLDVVEAMDAWA EW A + P G E+G + + APPFLWEG+PLV TI GQ+ KLV PEL WYGP FP NPF L YP+ DRP TP SA V+ +VNG+
Sbjct: 331 QQSRGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRVVQSHKDGGRVDVVFEDGDGERLSGISTKHVRLAPPXXXXXXXXXXXXXXXXXXVMAAGVSGRRNSCDRRPSCVPTSAPTDELVCSASRGELAHIACATKFLRCTWEDPVPISQEMARLRMLEERKMRGRPEWRGSFPLVDFSATKRLPFGAGGMARTGGRRARNAAASAATAAVATRDRQLQAQGTVHDDSRTRLRTVQWSPSSSLKMPTTVPQVHREENIDRDQGQGDRCTSTDDNTVKETNARSAGKRRSSXXXXXXXXXXXXXXXXGATALLEAQAKLVSAALAYDRYVAGARDCLDRGCAAFRLARTYSEQQKAFEESTAILGPAQPARAGYTDWRGSPVVGLQSATLDVVEAMDAWAAEWAADK--GGKPDTGGGGNAFAEEGVVLKDGAVAEVAVAAPPFLWEGSPLVSTIIGQSAKLVAGAPELKGWYGPGFPIERNPFFLAYPVDDRPVTPRSALVRAWVNGE 851 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig394.10241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig394.10241.1 >prot_H-paniculata_contig394.10241.1 ID=prot_H-paniculata_contig394.10241.1|Name=mRNA_H-paniculata_contig394.10241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=536bp QRDAAEQARGLFSELKRVARDARTTFSAADQVESCWRRPTRLDRPRIDPKback to top mRNA from alignment at H-paniculata_contig394:11570..13462+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig394.10241.1 ID=mRNA_H-paniculata_contig394.10241.1|Name=mRNA_H-paniculata_contig394.10241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1893bp|location=Sequence derived from alignment at H-paniculata_contig394:11570..13462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig394:11570..13462+ >mRNA_H-paniculata_contig394.10241.1 ID=mRNA_H-paniculata_contig394.10241.1|Name=mRNA_H-paniculata_contig394.10241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3216bp|location=Sequence derived from alignment at H-paniculata_contig394:11570..13462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |