mRNA_H-paniculata_contig39397.10239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39397.10239.1
Unique NamemRNA_H-paniculata_contig39397.10239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39397.10239.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.350e-14
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = -1 
Query:  390 LIVVDCDLGIVSGMRVEPLPAPVRRSLTQAVRAVLHGNLGKLDAAVRLSAPHQQQG 557
            LI+VDCDLGIV G  +E LP PVRRSLT+AVRAVLHGNLG LDA  RLS P    G
Sbjct:  731 LIIVDCDLGIVDGQGMEQLPPPVRRSLTKAVRAVLHGNLGGLDAPARLSKPEAAAG 786
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BLAST of mRNA_H-paniculata_contig39397.10239.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.490e-14
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = -1 
Query:  405 LIVVDCDLGIVSGMRVEPLPAPVRRSLTQAVRAVLHGNLGKLDAAVRLSAP 557
            LI+VDCDLGIV G  +E LP PVRRSLT+AVRAVLHGNLG LDA  RLS P
Sbjct:  693 LIIVDCDLGIVDGQGMEQLPPPVRRSLTKAVRAVLHGNLGGLDAPARLSKP 743
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39397.10239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KB05_9PHAE1.350e-1471.43UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LB83_ECTSI2.490e-1476.47WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39397contigH-paniculata_contig39397:308..945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size638
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39397.10239.1prot_H-paniculata_contig39397.10239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39397 542..895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930207.4759183-UTR-H-paniculata_contig39397:307..5411622930207.4759183-UTR-H-paniculata_contig39397:307..541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39397 308..541 +
1691481190.8930752-UTR-H-paniculata_contig39397:307..5411691481190.8930752-UTR-H-paniculata_contig39397:307..541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39397 308..541 +
1622930207.5063987-UTR-H-paniculata_contig39397:895..9451622930207.5063987-UTR-H-paniculata_contig39397:895..945Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39397 896..945 +
1691481190.908694-UTR-H-paniculata_contig39397:895..9451691481190.908694-UTR-H-paniculata_contig39397:895..945Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39397 896..945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930207.4907675-CDS-H-paniculata_contig39397:541..8951622930207.4907675-CDS-H-paniculata_contig39397:541..895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39397 542..895 +
1691481190.9012973-CDS-H-paniculata_contig39397:541..8951691481190.9012973-CDS-H-paniculata_contig39397:541..895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39397 542..895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39397.10239.1

>prot_H-paniculata_contig39397.10239.1 ID=prot_H-paniculata_contig39397.10239.1|Name=mRNA_H-paniculata_contig39397.10239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MPPTPLPLPLPLFALPSLAVPVLCKDDKKDEEAGSFDSSLRVLPLPSPPL
WWPCCWCGADSLTAASSLPRFPCSTARTACVRERRTGAGRGSTRMPLTIP
RSQSTTISYVFIVLMQG*
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mRNA from alignment at H-paniculata_contig39397:308..945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39397.10239.1 ID=mRNA_H-paniculata_contig39397.10239.1|Name=mRNA_H-paniculata_contig39397.10239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=638bp|location=Sequence derived from alignment at H-paniculata_contig39397:308..945+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCCATGCTCCCTCGATCGCCGCGCCTTGCTAACCTTAATCTCCGTCTC
CGTCCCCTCCAGCCCACCCAGCCGACCACCGCCGCCGCTCTTGCTACGAC
TGTCAGGATCCCCTGCCTCGCTCGATTTCTCGCCACCCCCTTGCCCCGCA
GCCGCTGCTGCCCGAACTCTTCGTTCCCTCGCGGCTTGCTCCCTGTCGGT
CGTCGACGCTGCTAATCCCACCGCAGTCGCTCCAATGCCGCCGACACCGC
TGCCGCTACCGCTGCCATTATTCGCTCTCCCATCGTTAGCGGTACCTGTT
CTGTGCAAGGACGACAAGAAGGACGAGGAGGCAGGCTCGTTCGACAGCAG
CCTCCGCGTACTGCCCCTTCCGTCTCCGCCACTCTGGTGGCCCTGCTGCT
GGTGCGGTGCTGACAGCCTAACGGCCGCGTCGAGTTTGCCTAGGTTCCCG
TGCAGCACCGCACGCACGGCCTGCGTGAGAGAGCGACGGACGGGAGCGGG
CAGGGGCTCCACGCGCATGCCGCTCACGATACCGAGGTCGCAGTCTACGA
CTATCAGCTACGTTTTCATTGTTTTAATGCAGGGATGATAAAAGATAAAA
GGATGAGCACGGGGGGGGGGGGGTGATTTGGGAGGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig39397:308..945+

>mRNA_H-paniculata_contig39397.10239.1 ID=mRNA_H-paniculata_contig39397.10239.1|Name=mRNA_H-paniculata_contig39397.10239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig39397:308..945+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCCGACACCGCTGCCGCTACCGCTGCCATTATTCGCTCTCCCATC
GTTAGCGGTACCTGTTCTGTGCAAGGACGACAAGAAGGACGAGGAGGCAG
GCTCGTTCGACAGCAGCCTCCGCGTACTGCCCCTTCCGTCTCCGCCACTC
TGGTGGCCCTGCTGCTGGTGCGGTGCTGACAGCCTAACGGCCGCGTCGAG
TTTGCCTAGGTTCCCGTGCAGCACCGCACGCACGGCCTGCGTGAGAGAGC
GACGGACGGGAGCGGGCAGGGGCTCCACGCGCATGCCGCTCACGATACCG
AGGTCGCAGTCTACGACTATCAGCTACGTTTTCATTGTTTTAATGCAGGG
ATGAATGCCGCCGACACCGCTGCCGCTACCGCTGCCATTATTCGCTCTCC
CATCGTTAGCGGTACCTGTTCTGTGCAAGGACGACAAGAAGGACGAGGAG
GCAGGCTCGTTCGACAGCAGCCTCCGCGTACTGCCCCTTCCGTCTCCGCC
ACTCTGGTGGCCCTGCTGCTGGTGCGGTGCTGACAGCCTAACGGCCGCGT
CGAGTTTGCCTAGGTTCCCGTGCAGCACCGCACGCACGGCCTGCGTGAGA
GAGCGACGGACGGGAGCGGGCAGGGGCTCCACGCGCATGCCGCTCACGAT
ACCGAGGTCGCAGTCTACGACTATCAGCTACGTTTTCATTGTTTTAATGC
AGGGATGA
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