mRNA_H-paniculata_contig3923.10211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3923.10211.1
Unique NamemRNA_H-paniculata_contig3923.10211.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: D8LG13_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG13_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.330e-38
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYP-GYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFARRFVSGFWSGLRGG 339
            R++ LL GNP PFVL +SLG+  ++CS+FF +GP KQ + M NPVR  AT  YL TL  TL+VAL P   +P R  +LL LV+ QF SYVWY+LSY+PFARRF++GFWSGLRGG
Sbjct:   66 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGG 179          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: A0A835Z2J1_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.420e-27
Identity = 54/105 (51.43%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFARRFVSG 315
            R+  L+ GNP PFV+NYS+GN+ S+C++FF +GP  Q + M  P R+ AT  Y+ TL LT  VAL P  MP R  +L+ LV++QF S++WY+LSYIPFAR + +G
Sbjct:   84 RIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPR-MPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAG 187          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: F0YE90_AURAN (Vesicle transport protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE90_AURAN)

HSP 1 Score: 106 bits (264), Expect = 1.050e-26
Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFARRFV 309
            R+  L+ GNP PF + YSLGN+ ++CS+FF +GP KQ +SM  P R+ AT  YLV +  TL+VAL+   +P R  ++++LV VQ  +  WY +SYIPFAR FV
Sbjct:   58 RIVELVGGNPKPFAVTYSLGNVIAICSSFFLAGPYKQCKSMLAPTRVIATATYLVAIGATLFVALFDARIPARAGLIILLVCVQTIALFWYMISYIPFARDFV 160          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: A0A482RX34_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX34_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 3.140e-23
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFARRFVS 312
            RL  LL G+P  F + Y+LGN+  LCS  F  GP  QA+ M    R+ A++ YL  +  TL++A YP Y+PGR A+L++ +++QF +  WY+LS+IPFAR  V+
Sbjct:   70 RLVRLLEGHPEDFAVMYTLGNVLGLCSTCFLYGPLSQAKQMFASTRLAASLIYLTLMGTTLFLAFYPAYVPGRLALLVLSIVLQFLALTWYTLSFIPFARDLVA 173          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: A0A2D4BV73_PYTIN (Vesicle transport protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV73_PYTIN)

HSP 1 Score: 90.5 bits (223), Expect = 1.580e-20
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFARRFV 309
            RL+ L+ GNP PF + Y++GNL SL S+ FF GPCKQ  +M    R  + I YL  + +TL V  +   MP R+ ++++ VL QF + VWY+LSYIP+ R+ V
Sbjct:   60 RLAKLVHGNPGPFAIAYTIGNLLSLGSSMFFVGPCKQVETMFRKKRRGSAIIYLSFIVVTL-VLCFARDMPHRFGLVMISVLCQFAALVWYTLSYIPYGRQMV 161          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: F0Y3C0_AURAN (Vesicle transport protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3C0_AURAN)

HSP 1 Score: 87.4 bits (215), Expect = 9.290e-20
Identity = 42/104 (40.38%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMP-GRYAMLLVLVLVQFFSYVWYSLSYIPFARRFV 309
            RL+ L++GNP PFV+ Y+LGNL  +  + F SGP  Q ++M +  RI AT+ Y  ++ +T++   Y G    GR  ++++ V VQ+ + +WY++S+IPFAR +V
Sbjct:   31 RLADLIKGNPTPFVVFYTLGNLMGIAGSLFLSGPKAQCKAMWDRTRIVATLFYFTSIIMTIFCCYYHGIPDDGRVGIIIMCVFVQWIAMIWYTISFIPFARDYV 134          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: A0A8K1FHZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHZ8_PYTOL)

HSP 1 Score: 88.2 bits (217), Expect = 1.250e-19
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFARRFV 309
            R   L+ GNP PF + Y++GNL S+CS+ FF GPCKQ  +M    R  + I Y+  + LTL V  +   +P R  ++++ +L QF + VWY+LSY+P+ R+ V
Sbjct:   60 RFVKLVHGNPGPFAVAYTIGNLLSICSSMFFVGPCKQIETMFRQKRRGSAILYIGFIVLTL-VLCFSRELPHRVGLVMISILCQFVALVWYTLSYVPYGRQIV 161          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.370e-19
Identity = 42/104 (40.38%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMP-GRYAMLLVLVLVQFFSYVWYSLSYIPFARRFV 309
            RL  L++GNP PFV+ Y+LGN+ ++  + F SGP  Q + M +P R  AT  YL+T+  T++VA Y G    GR  ++++ + +Q+ + +WY++S+IP+AR +V
Sbjct:   59 RLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAFYEGIPDDGRIGIIIMCIFIQWIAMLWYTISFIPYARDYV 162          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: A0A7S4HST6_9STRA (Vesicle transport protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HST6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.210e-18
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   13 LLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFARRFVSGF 318
            L  G+P PFVL Y+LG++ SL S+ F  GP +Q ++M +  R W TI +L T+ +TL     P     +   L++L+L+Q  + +WYSLSYIPFARR V  F
Sbjct:   75 LAEGDPVPFVLIYTLGHILSLSSSGFLVGPKRQCKNMFDKTRKWTTIVFLSTMIITLITCFVPMDSSAKLFTLILLLLIQLCASLWYSLSYIPFARRAVKKF 176          
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Match: A0A662WFW4_9STRA (Vesicle transport protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WFW4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.250e-18
Identity = 41/104 (39.42%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWATICYLVTLCLTLYVALYPGYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFARRFVS 312
            RL+ L+ GNP PF + Y++GN+ S+    FF GPCKQ ++M +  R W+   Y++ + +TL +   P ++  R  ++L+ VLVQF + +WY+LSY+P+ R  V+
Sbjct:   67 RLAKLVHGNPAPFAIAYTIGNVLSIGCTTFFVGPCKQVQTMFHSKRRWSAAVYVLFIFVTLGLCFSP-HIHHRVLLVLLSVLVQFVALIWYTLSYVPYGRSIVT 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3923.10211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG13_ECTSI1.330e-3860.53Vesicle transport protein n=2 Tax=Ectocarpus TaxID... [more]
A0A835Z2J1_9STRA2.420e-2751.43Vesicle transport protein n=1 Tax=Tribonema minus ... [more]
F0YE90_AURAN1.050e-2649.51Vesicle transport protein n=1 Tax=Aureococcus anop... [more]
A0A482RX34_9ARCH3.140e-2345.19Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2D4BV73_PYTIN1.580e-2045.63Vesicle transport protein n=2 Tax=Pythium insidios... [more]
F0Y3C0_AURAN9.290e-2040.38Vesicle transport protein (Fragment) n=1 Tax=Aureo... [more]
A0A8K1FHZ8_PYTOL1.250e-1941.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3JV88_9STRA1.370e-1940.38Vesicle transport protein n=1 Tax=Aureoumbra lagun... [more]
A0A7S4HST6_9STRA1.210e-1844.12Vesicle transport protein n=2 Tax=Odontella aurita... [more]
A0A662WFW4_9STRA3.250e-1839.42Vesicle transport protein n=2 Tax=Nothophytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3923contigH-paniculata_contig3923:13894..14235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D8LG13
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5102@1,KOG2887@2759
Ec32 ortholog descriptionVesicle transport protein, Got1/SFT2-like
Ec32 orthologEc-21_004990.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930203.7918143-CDS-H-paniculata_contig3923:13893..142351622930203.7918143-CDS-H-paniculata_contig3923:13893..14235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3923 13894..14235 -
1691481189.1639419-CDS-H-paniculata_contig3923:13893..142351691481189.1639419-CDS-H-paniculata_contig3923:13893..14235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3923 13894..14235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3923.10211.1prot_H-paniculata_contig3923.10211.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3923 13894..14235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3923.10211.1

>prot_H-paniculata_contig3923.10211.1 ID=prot_H-paniculata_contig3923.10211.1|Name=mRNA_H-paniculata_contig3923.10211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
RLSLLLRGNPHPFVLNYSLGNLFSLCSAFFFSGPCKQARSMCNPVRIWAT
ICYLVTLCLTLYVALYPGYMPGRYAMLLVLVLVQFFSYVWYSLSYIPFAR
RFVSGFWSGLRGG*
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mRNA from alignment at H-paniculata_contig3923:13894..14235-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3923.10211.1 ID=mRNA_H-paniculata_contig3923.10211.1|Name=mRNA_H-paniculata_contig3923.10211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig3923:13894..14235- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTATCCTTGCTTTTACGGGGGAATCCCCATCCTTTCGTCCTTAACTA CTCGCTGGGCAACCTGTTTTCGTTGTGCAGCGCATTTTTTTTCTCTGGCC CATGTAAACAAGCAAGGTCCATGTGCAATCCGGTGCGCATCTGGGCGACA ATCTGCTACCTCGTTACCCTGTGCCTTACGCTCTACGTCGCGTTGTATCC CGGCTACATGCCCGGCCGTTACGCTATGCTCCTTGTCTTGGTACTTGTTC AATTCTTCTCCTACGTATGGTATAGCCTTTCGTATATACCATTCGCCCGG AGGTTTGTGTCTGGATTCTGGTCTGGTCTTCGCGGAGGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3923:13894..14235-

>mRNA_H-paniculata_contig3923.10211.1 ID=mRNA_H-paniculata_contig3923.10211.1|Name=mRNA_H-paniculata_contig3923.10211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig3923:13894..14235- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTATCCTTGCTTTTACGGGGGAATCCCCATCCTTTCGTCCTTAACTA
CTCGCTGGGCAACCTGTTTTCGTTGTGCAGCGCATTTTTTTTCTCTGGCC
CATGTAAACAAGCAAGGTCCATGTGCAATCCGGTGCGCATCTGGGCGACA
ATCTGCTACCTCGTTACCCTGTGCCTTACGCTCTACGTCGCGTTGTATCC
CGGCTACATGCCCGGCCGTTACGCTATGCTCCTTGTCTTGGTACTTGTTC
AATTCTTCTCCTACGTATGGTATAGCCTTTCGTATATACCATTCGCCCGG
AGGTTTGTGTCTGGATTCTGGTCTGGTCTTCGCGGAGGATAAAGGTTATC
CTTGCTTTTACGGGGGAATCCCCATCCTTTCGTCCTTAACTACTCGCTGG
GCAACCTGTTTTCGTTGTGCAGCGCATTTTTTTTCTCTGGCCCATGTAAA
CAAGCAAGGTCCATGTGCAATCCGGTGCGCATCTGGGCGACAATCTGCTA
CCTCGTTACCCTGTGCCTTACGCTCTACGTCGCGTTGTATCCCGGCTACA
TGCCCGGCCGTTACGCTATGCTCCTTGTCTTGGTACTTGTTCAATTCTTC
TCCTACGTATGGTATAGCCTTTCGTATATACCATTCGCCCGGAGGTTTGT
GTCTGGATTCTGGTCTGGTCTTCGCGGAGGATAA
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