mRNA_H-paniculata_contig3923.10208.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3923.10208.1
Unique NamemRNA_H-paniculata_contig3923.10208.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3923.10208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3923contigH-paniculata_contig3923:1708..2371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size664
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3923.10208.1prot_H-paniculata_contig3923.10208.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3923 1813..2169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930203.6187859-UTR-H-paniculata_contig3923:1707..18121622930203.6187859-UTR-H-paniculata_contig3923:1707..1812Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3923 1708..1812 +
1691481189.0910912-UTR-H-paniculata_contig3923:1707..18121691481189.0910912-UTR-H-paniculata_contig3923:1707..1812Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3923 1708..1812 +
1622930203.6463995-UTR-H-paniculata_contig3923:2169..23711622930203.6463995-UTR-H-paniculata_contig3923:2169..2371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3923 2170..2371 +
1691481189.1134102-UTR-H-paniculata_contig3923:2169..23711691481189.1134102-UTR-H-paniculata_contig3923:2169..2371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3923 2170..2371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930203.6341789-CDS-H-paniculata_contig3923:1812..21691622930203.6341789-CDS-H-paniculata_contig3923:1812..2169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3923 1813..2169 +
1691481189.102541-CDS-H-paniculata_contig3923:1812..21691691481189.102541-CDS-H-paniculata_contig3923:1812..2169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3923 1813..2169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3923.10208.1

>prot_H-paniculata_contig3923.10208.1 ID=prot_H-paniculata_contig3923.10208.1|Name=mRNA_H-paniculata_contig3923.10208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MCTKHFLFADRAQVRCTRGSTRGEPLDATNGHLLVLQRCRPQSLACSVLG
VLWACLELASLILCDFLARCETRVLDIASEVGCLYSRGIQGCVHFYMSVS
TGNFKHRCLEGIPHSVHY*
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mRNA from alignment at H-paniculata_contig3923:1708..2371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3923.10208.1 ID=mRNA_H-paniculata_contig3923.10208.1|Name=mRNA_H-paniculata_contig3923.10208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=664bp|location=Sequence derived from alignment at H-paniculata_contig3923:1708..2371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGACAAGAAATGGTATCACCCTGACATCCCCGCCGTAAACACGACGAA
CACAGACAAGTAGTCATATAAGTGTGCTGTAAATCTTGTAACAGAATAGC
ATATTATGTGTACAAAGCACTTCTTGTTTGCAGACAGGGCACAGGTCCGT
TGTACGAGGGGGTCGACTCGAGGGGAACCGCTGGATGCCACGAACGGGCA
TCTTCTTGTACTGCAGCGCTGCCGACCTCAGTCTCTAGCATGTTCAGTAC
TTGGTGTCCTGTGGGCATGTCTTGAGCTTGCGTCATTAATTTTGTGTGAC
TTCTTGGCCAGATGCGAGACTAGGGTATTGGACATTGCAAGTGAAGTTGG
CTGTTTGTATTCGAGGGGTATTCAGGGATGCGTTCATTTTTATATGTCAG
TATCCACAGGGAATTTTAAACATAGATGTCTGGAGGGAATTCCCCACTCT
GTCCACTATTAGAGAGAAAGAGAAGACCTCCACAATTATTAGATTGGTCA
ACGTTTTGGAAGGAACAATTTGATTGGTCTGCTCGCTGCGTACAATGATG
TGACTCACGATCGTGAGGTGACGTACTTTCCGGTCGGGGTGATTTTTACT
TGGAGGCGGTCGTCACGTACGAAAAAATGTATTTCAAGCTGATGAGAAAA
TCTGATCGTAAACC
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Coding sequence (CDS) from alignment at H-paniculata_contig3923:1708..2371+

>mRNA_H-paniculata_contig3923.10208.1 ID=mRNA_H-paniculata_contig3923.10208.1|Name=mRNA_H-paniculata_contig3923.10208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig3923:1708..2371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTACAAAGCACTTCTTGTTTGCAGACAGGGCACAGGTCCGTTGTAC
GAGGGGGTCGACTCGAGGGGAACCGCTGGATGCCACGAACGGGCATCTTC
TTGTACTGCAGCGCTGCCGACCTCAGTCTCTAGCATGTTCAGTACTTGGT
GTCCTGTGGGCATGTCTTGAGCTTGCGTCATTAATTTTGTGTGACTTCTT
GGCCAGATGCGAGACTAGGGTATTGGACATTGCAAGTGAAGTTGGCTGTT
TGTATTCGAGGGGTATTCAGGGATGCGTTCATTTTTATATGTCAGTATCC
ACAGGGAATTTTAAACATAGATGTCTGGAGGGAATTCCCCACTCTGTCCA
CTATTAGATGTGTACAAAGCACTTCTTGTTTGCAGACAGGGCACAGGTCC
GTTGTACGAGGGGGTCGACTCGAGGGGAACCGCTGGATGCCACGAACGGG
CATCTTCTTGTACTGCAGCGCTGCCGACCTCAGTCTCTAGCATGTTCAGT
ACTTGGTGTCCTGTGGGCATGTCTTGAGCTTGCGTCATTAATTTTGTGTG
ACTTCTTGGCCAGATGCGAGACTAGGGTATTGGACATTGCAAGTGAAGTT
GGCTGTTTGTATTCGAGGGGTATTCAGGGATGCGTTCATTTTTATATGTC
AGTATCCACAGGGAATTTTAAACATAGATGTCTGGAGGGAATTCCCCACT
CTGTCCACTATTAG
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