mRNA_H-paniculata_contig39216.10206.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39216.10206.1
Unique NamemRNA_H-paniculata_contig39216.10206.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39216.10206.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.570e-18
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 ERTGSPVGRPADLREFLGNMGLGKYAEILRDNEIDLEAVQLMADSDFQDIG 153
            ER G+PVG PADL EFLG+MGLG+YA+ L +NEIDLEAVQLMADSDFQDIG
Sbjct:  431 ERPGTPVGNPADLAEFLGDMGLGQYAQALTENEIDLEAVQLMADSDFQDIG 481
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BLAST of mRNA_H-paniculata_contig39216.10206.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.570e-18
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 ERTGSPVGRPADLREFLGNMGLGKYAEILRDNEIDLEAVQLMADSDFQDIG 153
            ER G+PVG PADL EFLG+MGLG+YA+ L +NEIDLEAVQLMADSDFQDIG
Sbjct:  571 ERPGTPVGNPADLAEFLGDMGLGQYAQALTENEIDLEAVQLMADSDFQDIG 621
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BLAST of mRNA_H-paniculata_contig39216.10206.1 vs. uniprot
Match: A0A382VC15_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VC15_9ZZZZ)

HSP 1 Score: 50.1 bits (118), Expect = 5.630e-6
Identity = 19/40 (47.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   34 DLREFLGNMGLGKYAEILRDNEIDLEAVQLMADSDFQDIG 153
            D+ ++L N+GL KYA++  +NEIDL+AV L+++ DF+++G
Sbjct:    4 DIEQWLDNLGLSKYADVFAENEIDLDAVGLLSEEDFKELG 43
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BLAST of mRNA_H-paniculata_contig39216.10206.1 vs. uniprot
Match: UPI001F04F7B9 (ankyrin repeat domain-containing protein 17-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F7B9)

HSP 1 Score: 47.4 bits (111), Expect = 9.680e-5
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   13 SPVGRPAD-LREFLGNMGLGKYAEILRDNEIDLEAVQLMADSDFQDIG 153
            S V RP D L+EFL  +GL  Y  + + NEIDLEA+ LM ++D+ +IG
Sbjct: 1921 SSVARPIDGLQEFLDRLGLSNYLVLFQKNEIDLEALLLMNETDYAEIG 1968
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39216.10206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHT5_ECTSI2.570e-1880.39SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JET1_9PHAE2.570e-1880.39SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A382VC15_9ZZZZ5.630e-647.50Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
UPI001F04F7B99.680e-550.00ankyrin repeat domain-containing protein 17-like n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39216contigH-paniculata_contig39216:171..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-07_006720.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930203.4459085-CDS-H-paniculata_contig39216:170..3231622930203.4459085-CDS-H-paniculata_contig39216:170..323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39216 171..323 -
1691481189.010884-CDS-H-paniculata_contig39216:170..3231691481189.010884-CDS-H-paniculata_contig39216:170..323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39216 171..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39216.10206.1prot_H-paniculata_contig39216.10206.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39216 171..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39216.10206.1

>prot_H-paniculata_contig39216.10206.1 ID=prot_H-paniculata_contig39216.10206.1|Name=mRNA_H-paniculata_contig39216.10206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
ERTGSPVGRPADLREFLGNMGLGKYAEILRDNEIDLEAVQLMADSDFQDI
G
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mRNA from alignment at H-paniculata_contig39216:171..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39216.10206.1 ID=mRNA_H-paniculata_contig39216.10206.1|Name=mRNA_H-paniculata_contig39216.10206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig39216:171..323- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGGACTGGGTCGCCCGTGGGGCGACCCGCCGACCTCCGGGAGTTTTT
GGGCAACATGGGACTGGGAAAGTACGCGGAGATCTTGCGCGACAACGAAA
TTGACCTGGAGGCTGTTCAGCTCATGGCCGATTCCGACTTTCAGGACATC
GGT
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Coding sequence (CDS) from alignment at H-paniculata_contig39216:171..323-

>mRNA_H-paniculata_contig39216.10206.1 ID=mRNA_H-paniculata_contig39216.10206.1|Name=mRNA_H-paniculata_contig39216.10206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig39216:171..323- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGGACTGGGTCGCCCGTGGGGCGACCCGCCGACCTCCGGGAGTTTTT
GGGCAACATGGGACTGGGAAAGTACGCGGAGATCTTGCGCGACAACGAAA
TTGACCTGGAGGCTGTTCAGCTCATGGCCGATTCCGACTTTCAGGACATC
GGTGAGCGGACTGGGTCGCCCGTGGGGCGACCCGCCGACCTCCGGGAGTT
TTTGGGCAACATGGGACTGGGAAAGTACGCGGAGATCTTGCGCGACAACG
AAATTGACCTGGAGGCTGTTCAGCTCATGGCCGATTCCGACTTTCAGGAC
ATCGGT
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