mRNA_H-paniculata_contig391.10182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig391.10182.1
Unique NamemRNA_H-paniculata_contig391.10182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: D8LH42_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH42_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 4.180e-22
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 ESIQGRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVTHFLGVLR 219
            E I+G+TL  +QGP TDA  +AAL  EI+RG A S++L NYK DGS FLNY+RVYPL+GD  G VTH LGVL+
Sbjct:  281 EDIRGQTLKAIQGPRTDAGGLAALNREIERGRAASAVLPNYKSDGSEFLNYLRVYPLVGDGRGTVTHILGVLQ 353          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: A0A8J2WXK6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXK6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.220e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    4 SIQGRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDA--LGNVTHFLGVLR 219
            S+ GRTL V+QGP TD  S+  L  EI +GHAT + L+NYK DG++F+NY+RV P+  D       +H+LG+LR
Sbjct:  343 SVVGRTLRVIQGPLTDRESLKRLHAEIIQGHATDATLLNYKGDGATFINYLRVCPIYPDRDPASKPSHYLGILR 416          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: A0A7S2CL90_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CL90_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.960e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   13 GRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVT-----HFLGVLR 219
            G+TL+++QG  TD A +  +  +++   A+S+ + NY++DGSSFLNY+RVYPL  D  G  +     H+LGVL 
Sbjct:  126 GKTLSMIQGTGTDRAQLRRMMHDVKHACASSATITNYRKDGSSFLNYVRVYPLTNDEGGATSGTAPSHYLGVLE 199          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: UPI001F5B227C (PAS domain-containing protein n=1 Tax=Halorhodospira abdelmalekii TaxID=421629 RepID=UPI001F5B227C)

HSP 1 Score: 63.2 bits (152), Expect = 6.590e-10
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 ESIQGRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVTHFLGV 213
            + I G    +LQGP TDA +   L+  +QR  A    L+NY++DGS+F N++R+ P I D  G VTH+LG+
Sbjct:  975 DEIYGENCRILQGPETDADAKVVLRDALQRQEAVEVTLINYRKDGSTFPNHLRITP-IRDEQGQVTHYLGI 1044          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: A0A8E2FAA3_9PEZI (PAC domain-containing protein n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2FAA3_9PEZI)

HSP 1 Score: 62.0 bits (149), Expect = 1.650e-9
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   13 GRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVTHFLG 210
            GR    LQGP T+A SV+ L+  ++ G  TS +L+NY++DGS F+N + + PL+ D+ GN+ +++G
Sbjct:  245 GRNCRFLQGPKTNATSVSRLRAAVEAGKETSEVLLNYRRDGSPFMNLLMIAPLL-DSRGNLRYYIG 309          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: A0A7S3B9J4_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B9J4_9VIRI)

HSP 1 Score: 61.6 bits (148), Expect = 2.280e-9
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   13 GRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVTHFLGV 213
            GR    LQG  TD A +A L+  I  G   S  + NYK+DG+ F+NY+ + P++ DA GN+THF+G+
Sbjct:  331 GRNCRFLQGEGTDPAQIAKLRKGILAGERVSVQMQNYKKDGTPFVNYLSLTPIL-DAAGNLTHFVGI 396          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: A0A1F4KB22_9BURK (Histidine kinase n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 TaxID=1797566 RepID=A0A1F4KB22_9BURK)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-8
Identity = 26/69 (37.68%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   13 GRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVTHFLGVLR 219
            G+T   +QGP TDA ++A++++ +  G A S  ++NY++DG++F N + + P+  D  G +THF+G++R
Sbjct:  252 GQTCRFIQGPLTDAQTLASIRMAMTNGMAFSGDILNYRKDGTTFWNELNISPVF-DVQGVLTHFIGIIR 319          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: G1XLP1_ARTOA (PAC domain-containing protein n=9 Tax=Orbilia oligospora TaxID=2813651 RepID=G1XLP1_ARTOA)

HSP 1 Score: 58.9 bits (141), Expect = 2.030e-8
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    7 IQGRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVTHFLG 210
            + GR    LQGP T   SVA L+  +++GH  +   +NYK+DG+ FLN + V PL+ D+ G V +F+G
Sbjct:  494 VSGRNCRFLQGPKTQRHSVARLRDAVRQGHEITECFLNYKRDGTPFLNLVMVAPLL-DSKGQVRYFIG 560          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: A0A6A6XKN8_9PLEO (PAC domain-containing protein n=1 Tax=Melanomma pulvis-pyrius CBS 109.77 TaxID=1314802 RepID=A0A6A6XKN8_9PLEO)

HSP 1 Score: 58.2 bits (139), Expect = 3.770e-8
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   13 GRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVTHFLG 210
            GR    LQGP T+  SV  L+  +Q G  TS + +NY++DGS F+N + + PL+ D+ GN+ +F+G
Sbjct:  384 GRNCRFLQGPRTNRDSVRRLREAVQEGRETSEVFLNYRRDGSPFMNLLMMAPLL-DSRGNLRYFIG 448          
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Match: A0A6A6IWW1_9PLEO (PAC domain-containing protein n=1 Tax=Trematosphaeria pertusa TaxID=390896 RepID=A0A6A6IWW1_9PLEO)

HSP 1 Score: 57.8 bits (138), Expect = 5.190e-8
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   13 GRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLNYMRVYPLIGDALGNVTHFLG 210
            GR    LQGP T+ +SVA L+  +  G   S + +NY++DGS F+N + + PL+ D+ GN+ +F+G
Sbjct:  434 GRNCRFLQGPRTNRSSVARLRRAVDEGREVSEVFLNYRRDGSPFMNLLMMAPLL-DSRGNLRYFIG 498          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig391.10182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH42_ECTSI4.180e-2263.01PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J2WXK6_9STRA7.220e-1450.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2CL90_9STRA1.960e-1143.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001F5B227C6.590e-1043.66PAS domain-containing protein n=1 Tax=Halorhodospi... [more]
A0A8E2FAA3_9PEZI1.650e-942.42PAC domain-containing protein n=1 Tax=Glonium stel... [more]
A0A7S3B9J4_9VIRI2.280e-944.78Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A1F4KB22_9BURK1.500e-837.68Histidine kinase n=1 Tax=Burkholderiales bacterium... [more]
G1XLP1_ARTOA2.030e-842.65PAC domain-containing protein n=9 Tax=Orbilia olig... [more]
A0A6A6XKN8_9PLEO3.770e-842.42PAC domain-containing protein n=1 Tax=Melanomma pu... [more]
A0A6A6IWW1_9PLEO5.190e-840.91PAC domain-containing protein n=1 Tax=Trematosphae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig391contigH-paniculata_contig391:35602..35820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D8LH42
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAS domain
EggNOG OGs2CY5M@1,2S26N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930198.5680382-CDS-H-paniculata_contig391:35601..358201622930198.5680382-CDS-H-paniculata_contig391:35601..35820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig391 35602..35820 -
1691481187.5842505-CDS-H-paniculata_contig391:35601..358201691481187.5842505-CDS-H-paniculata_contig391:35601..35820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig391 35602..35820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig391.10182.1prot_H-paniculata_contig391.10182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig391 35602..35820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig391.10182.1

>prot_H-paniculata_contig391.10182.1 ID=prot_H-paniculata_contig391.10182.1|Name=mRNA_H-paniculata_contig391.10182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
ESIQGRTLAVLQGPSTDAASVAALKLEIQRGHATSSLLVNYKQDGSSFLN
YMRVYPLIGDALGNVTHFLGVLR
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mRNA from alignment at H-paniculata_contig391:35602..35820-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig391.10182.1 ID=mRNA_H-paniculata_contig391.10182.1|Name=mRNA_H-paniculata_contig391.10182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig391:35602..35820- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATCTATCCAGGGGCGTACCTTGGCCGTCCTGCAAGGCCCTAGCACCGA CGCAGCGAGTGTGGCTGCTCTCAAGTTGGAGATCCAGCGCGGACATGCCA CCAGTTCGCTTCTTGTCAATTACAAGCAAGACGGCAGTAGCTTCCTCAAC TACATGCGCGTGTATCCTCTGATTGGGGATGCCTTGGGGAACGTTACTCA CTTTCTCGGCGTTCTCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig391:35602..35820-

>mRNA_H-paniculata_contig391.10182.1 ID=mRNA_H-paniculata_contig391.10182.1|Name=mRNA_H-paniculata_contig391.10182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig391:35602..35820- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATCTATCCAGGGGCGTACCTTGGCCGTCCTGCAAGGCCCTAGCACCGA
CGCAGCGAGTGTGGCTGCTCTCAAGTTGGAGATCCAGCGCGGACATGCCA
CCAGTTCGCTTCTTGTCAATTACAAGCAAGACGGCAGTAGCTTCCTCAAC
TACATGCGCGTGTATCCTCTGATTGGGGATGCCTTGGGGAACGTTACTCA
CTTTCTCGGCGTTCTCCGGGAATCTATCCAGGGGCGTACCTTGGCCGTCC
TGCAAGGCCCTAGCACCGACGCAGCGAGTGTGGCTGCTCTCAAGTTGGAG
ATCCAGCGCGGACATGCCACCAGTTCGCTTCTTGTCAATTACAAGCAAGA
CGGCAGTAGCTTCCTCAACTACATGCGCGTGTATCCTCTGATTGGGGATG
CCTTGGGGAACGTTACTCACTTTCTCGGCGTTCTCCGG
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