mRNA_H-paniculata_contig391.10181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig391.10181.1
Unique NamemRNA_H-paniculata_contig391.10181.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig391.10181.1 vs. uniprot
Match: A0A6H5JN11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN11_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 9.470e-5
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:  395 QRAEETDDTPALFVTTMPQDIWANPSLGALAALIDESNEEQMNGANGSQ 541
            +  E+ +D  ALF T+MP+D+WANPSL ALAA+IDE  EE+    +G +
Sbjct:    7 EEQEKDEDVCALFATSMPRDVWANPSLAALAAMIDEDAEEKEKQVDGQE 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig391.10181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN11_9PHAE9.470e-551.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig391contigH-paniculata_contig391:10740..14177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1506
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig391.10181.1prot_H-paniculata_contig391.10181.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig391 11108..13933 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930198.432921-UTR-H-paniculata_contig391:10739..111071622930198.432921-UTR-H-paniculata_contig391:10739..11107Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig391 10740..11107 -
1691481187.5311756-UTR-H-paniculata_contig391:10739..111071691481187.5311756-UTR-H-paniculata_contig391:10739..11107Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig391 10740..11107 -
1622930198.4871883-UTR-H-paniculata_contig391:13933..141771622930198.4871883-UTR-H-paniculata_contig391:13933..14177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig391 13934..14177 -
1691481187.5619361-UTR-H-paniculata_contig391:13933..141771691481187.5619361-UTR-H-paniculata_contig391:13933..14177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig391 13934..14177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930198.4544563-CDS-H-paniculata_contig391:11107..117121622930198.4544563-CDS-H-paniculata_contig391:11107..11712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig391 11108..11712 -
1691481187.5417721-CDS-H-paniculata_contig391:11107..117121691481187.5417721-CDS-H-paniculata_contig391:11107..11712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig391 11108..11712 -
1622930198.47119-CDS-H-paniculata_contig391:13644..139331622930198.47119-CDS-H-paniculata_contig391:13644..13933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig391 13645..13933 -
1691481187.5515394-CDS-H-paniculata_contig391:13644..139331691481187.5515394-CDS-H-paniculata_contig391:13644..13933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig391 13645..13933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig391.10181.1

>prot_H-paniculata_contig391.10181.1 ID=prot_H-paniculata_contig391.10181.1|Name=mRNA_H-paniculata_contig391.10181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=298bp
MHTPHPGQCFYVSFPAMDLESEDNALIAGGASVTAMEEDAAIRSSIPNDQ
QRAEETDDTPALFVTTMPQDIWANPSLGALAALIDESNEEQMNGANGSQS
EGGHPSTAGHDRNTGTAVVADAAADDDSLEFTNSENDAAAQTLQAARMHH
PTTIAQDDNKGRQQQQEHAPLATPDETGTTINPLYQHEHQHPPQHHHPSN
SSGVTVNTNLFRIGEEVTTNIGIAGGATTGRHSRHRDAVRQRRSERRAVA
SPCGGISRSSSQQGRGRGREGTAGIKGRGREGPTSGEMQVLMSLLGI*
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mRNA from alignment at H-paniculata_contig391:10740..14177-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig391.10181.1 ID=mRNA_H-paniculata_contig391.10181.1|Name=mRNA_H-paniculata_contig391.10181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3438bp|location=Sequence derived from alignment at H-paniculata_contig391:10740..14177- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGAAGACGGTGCTCCCTGGCGAAACTGGCTCCCACCGAGGCAATCTGT
CCTGGCTCTGGTATACATCTATGTTCAGGGATGATATATGTAGTAGTGTG
GAGCACACACATGAGGTACACGTTCACGCACGACAGTGATTCACCTCCAC
TTGTGGATTCCATTCACGTGGCTTCTTCAATGCACACACCACGAGACTAT
CCCAGATCGCCTCGTTCACTGAACGCCTTTCGGCCGTCAACGTCATGCAT
ACACCACACCCTGGACAGTGCTTCTACGTATCCTTCCCTGCCATGGATCT
TGAGAGCGAGGACAATGCACTGATCGCTGGTGGGGCCTCTGTAACAGCCA
TGGAGGAGGATGCTGCTATTAGAAGTTCAATTCCCAATGACCAGCAGCGG
GCGGAGGAGACAGATGACACACCAGCTCTGTTCGTCACGACCATGCCTCA
GGACATTTGGGCTAACCCGTCTCTGGGAGCGTTGGCAGCACTTATCGATG
AGAGCAATGAGGAGCAGATGAATGGCGCAAACGGTGCGTACACTCGATCT
GAACGACCTCTGCGAAGGTTATGTGCAAAATCAACTTTCCCAGCAACTGC
TGTTGTGCAGGTGATGAGTGATATGATACGGTGACAACTTTTTTTCAAAG
TCCTTTTCTCGAAAAGCACGGCGCTCGTGACGCCGACAGTTGTCTTGTTG
GACATATGCCGCCTAAATCTATCTACATGCGGATACTCCTAGACATCGCA
GGGTTTTTACTTTTTCTTGGGGGAAAATATCGAATTTCGAAAAAACAAGA
GTTAAAGGTGGGCGTTCGATACTTGCGTTTGAAAATTGATATTTTGAGAT
ATTGGCCCCTGTTCAACTTATCAAAATATCAATTTTCAAACGCAAGTATC
GAACGCCCACAGGAGTTGGCCTAATCACTCAGGACTTGAATCTTTCAACC
TTAACCTTTCCTGGCGAATACAGTTCATTGCAAGCACAGTACAGATGCGA
ACCTCCAGTGAGAAACTCTTATTCGGGCCGACGCCCAACACCTTATTTCG
GGCAGTAGGTTGAGCTTGATTTCTTACCCTCCAGTTCCTTGTTCTCAAAG
GGAAGAAAAGTTTGGTTTTCTAATACCGTTGTTTCTTAATTTGGTCCCTG
CTGTAACTGACGTGATGCACGCACAAACTCGGAGTAAATAAGGTACCACT
CATCGCAGTAGTACTTCTTGTTTTGTGTTGGGATCTTGAAAGGGAACTTG
AAGGGTTCCGCAAAGAACGAAAAGAGGGTTCCGTCTTCCTTTAATACGGA
GGGGTCCATTGGGGGGGGTGGCGTGTTTTCTGTAGTTTCTCATTCCTGTC
GAAGAGCATCATGTTTCTTATCCGACTATAGCTCTCAGTGGCAATTTCTT
TTATGACGGTTTCTTATCCTCTGGCAAAATTTGAGCTCGATTTCTTACAC
CCCTCCGATTTACCGCAGTTTTTGCATGTTTTCGAATTTTCGCCGTCGAC
CGTTCACCTCCTGTCCCCTTTCAAAAATGTACCAGAAAAATGTAGGTGGA
TCTTTGCTGTTTGGGTCAAGGGCTCCCATCAACCCCCCCCTTTCAGTAGA
TGGGAAAACAACTTAAAATCGCCTCTCCCCCTCCTTAAATCATCGAAGTA
TCATATTCGAATGTTCTTGCTCATCAAACCGAACAACTCCCGAATGCCCG
TTTTTAGCCAAAAGTTGCAACAATTTTTCGAACTGTCTGGTGGCAACTCG
GACGTTTTCTTGGATTTGCGAGAATTCGATTTGTGCAAAAATGCCGGTAC
GTATGTGGGGGGGGCTTGGATGCTACACCTCAATTATTTCGCTATTTTTG
TGCGCAATTTCATTAATCCTGTCGACCTTTCAATGGTCCTGATTACAGCT
AGTGAGCTCAGTAGAATTCACCGTCTGCCGAGTTATCGCGTCGTCATGTA
TGATTGCGTTGTATATTTGATTTCAACGAGCCATTGGTACATGCACGATC
TCTCGACGACTTTTCGCTTTTTTGTACGCCGCATAGGGGCATGTAGAGTG
ATCCAGCCGGCTTCTGGGCCCCGATCTGATAAACACCACGGAATGCTAGG
GGTTTTTAACAGTAAGAGTAAGCGTTACGTTTTAAGCAGCTTCACCCTGT
ATGCGCAAATCGTCAAGACGCCGAAAAAGAGCATAAATTTAGAAGATTCG
ACAGGCGGTGGTGATGAACAAGCCTCATATCAAGTCTAGATGAACAACCC
GCCACGGAGCATGGGTATGAATTGACCACATGTAGACCACTCGCGTTCAA
AGGGGGTACTTCGCGGTTTGAGTATGAGTCGTATATATGCGTTGAATTAA
AAAGAAAATCCCATGGTCAAATAATATGGGACACAAATTGACACCCTTCA
TGGTCAAAGTGTATACTTGAAAAAAGGTCTTACGTGGTGATACTGCACTC
GCTCCTCATCAGCAGGTAGCCAGAGCGAGGGTGGACATCCTTCGACAGCC
GGCCACGACCGCAACACCGGCACTGCCGTGGTAGCAGACGCAGCAGCAGA
CGATGATTCGCTTGAATTCACAAATTCCGAGAACGATGCTGCTGCCCAGA
CACTACAAGCAGCAAGGATGCACCATCCAACAACAATCGCCCAAGACGAC
AACAAAGGGCGACAACAGCAACAAGAACATGCACCGCTTGCCACACCGGA
CGAAACAGGTACCACGATTAACCCCTTGTACCAGCATGAACACCAACACC
CCCCCCAACACCATCACCCCTCAAACAGCAGTGGCGTCACCGTCAATACC
AATCTCTTCCGAATAGGCGAAGAAGTCACAACAAATATTGGAATCGCTGG
CGGCGCCACTACAGGCAGACATAGTAGACATCGAGACGCAGTGCGACAAA
GGCGAAGCGAGCGAAGAGCGGTGGCATCGCCGTGTGGTGGCATTAGTAGG
TCATCAAGTCAACAGGGGCGGGGTAGGGGTAGAGAAGGCACCGCGGGCAT
AAAGGGACGGGGACGGGAGGGGCCGACGAGCGGCGAAATGCAAGTGCTTA
TGTCGTTGTTGGGCATTTAAGGAGTGAATGCTCTCGCGGCGGTGAGTGGG
ATGCTACCGAGTTTGTAGGGTACTTTGGAGGGAAAGGATGGACATCGCGC
TGATTGTTTAGAGCTAGCTAATTATATACTTTTCCGAGGTACAGCTGGCT
GTAGTTCATACTGTACATCGTAAGTAATTATGAGATATTAGAGATGGGAA
TGGTTGTATACCAACCGTGGACTTACAGTCCCGCAGTTGATGTCTCGAGG
ACTTCCCTCTTGCACTGACCCGAAGTATGTTACCCAGTATACGTTATTAG
TTCACCCAACTCAACACGGAAGTGATAAGCACCTCCAACAACACCCACTG
TTGGACTATACCAAGACAAACCGTGGAGACAATCCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig391:10740..14177-

>mRNA_H-paniculata_contig391.10181.1 ID=mRNA_H-paniculata_contig391.10181.1|Name=mRNA_H-paniculata_contig391.10181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at H-paniculata_contig391:10740..14177- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATACACCACACCCTGGACAGTGCTTCTACGTATCCTTCCCTGCCAT
GGATCTTGAGAGCGAGGACAATGCACTGATCGCTGGTGGGGCCTCTGTAA
CAGCCATGGAGGAGGATGCTGCTATTAGAAGTTCAATTCCCAATGACCAG
CAGCGGGCGGAGGAGACAGATGACACACCAGCTCTGTTCGTCACGACCAT
GCCTCAGGACATTTGGGCTAACCCGTCTCTGGGAGCGTTGGCAGCACTTA
TCGATGAGAGCAATGAGGAGCAGATGAATGGCGCAAACGATGCATACACC
ACACCCTGGACAGTGCTTCTACGTATCCTTCCCTGCCATGGATCTTGAGA
GCGAGGACAATGCACTGATCGCTGGTGGGGCCTCTGTAACAGCCATGGAG
GAGGATGCTGCTATTAGAAGTTCAATTCCCAATGACCAGCAGCGGGCGGA
GGAGACAGATGACACACCAGCTCTGTTCGTCACGACCATGCCTCAGGACA
TTTGGGCTAACCCGTCTCTGGGAGCGTTGGCAGCACTTATCGATGAGAGC
AATGAGGAGCAGATGAATGGCGCAAACGGTAGCCAGAGCGAGGGTGGACA
TCCTTCGACAGCCGGCCACGACCGCAACACCGGCACTGCCGTGGTAGCAG
ACGCAGCAGCAGACGATGATTCGCTTGAATTCACAAATTCCGAGAACGAT
GCTGCTGCCCAGACACTACAAGCAGCAAGGATGCACCATCCAACAACAAT
CGCCCAAGACGACAACAAAGGGCGACAACAGCAACAAGAACATGCACCGC
TTGCCACACCGGACGAAACAGGTACCACGATTAACCCCTTGTACCAGCAT
GAACACCAACACCCCCCCCAACACCATCACCCCTCAAACAGCAGTGGCGT
CACCGTCAATACCAATCTCTTCCGAATAGGCGAAGAAGTCACAACAAATA
TTGGAATCGCTGGCGGCGCCACTACAGGCAGACATAGTAGACATCGAGAC
GCAGTGCGACAAAGGCGAAGCGAGCGAAGAGCGGTGGCATCGCCGTGTGG
TGGCATTAGTAGGTCATCAAGTCAACAGGGGCGGGGTAGGGGTAGAGAAG
GCACCGCGGGCATAAAGGGACGGGGACGGGAGGGGCCGACGAGCGGCGAA
ATGCAAGTGCTTATGTCGTTGTTGGGCATTTAAGTAGCCAGAGCGAGGGT
GGACATCCTTCGACAGCCGGCCACGACCGCAACACCGGCACTGCCGTGGT
AGCAGACGCAGCAGCAGACGATGATTCGCTTGAATTCACAAATTCCGAGA
ACGATGCTGCTGCCCAGACACTACAAGCAGCAAGGATGCACCATCCAACA
ACAATCGCCCAAGACGACAACAAAGGGCGACAACAGCAACAAGAACATGC
ACCGCTTGCCACACCGGACGAAACAGGTACCACGATTAACCCCTTGTACC
AGCATGAACACCAACACCCCCCCCAACACCATCACCCCTCAAACAGCAGT
GGCGTCACCGTCAATACCAATCTCTTCCGAATAGGCGAAGAAGTCACAAC
AAATATTGGAATCGCTGGCGGCGCCACTACAGGCAGACATAGTAGACATC
GAGACGCAGTGCGACAAAGGCGAAGCGAGCGAAGAGCGGTGGCATCGCCG
TGTGGTGGCATTAGTAGGTCATCAAGTCAACAGGGGCGGGGTAGGGGTAG
AGAAGGCACCGCGGGCATAAAGGGACGGGGACGGGAGGGGCCGACGAGCG
GCGAAATGCAAGTGCTTATGTCGTTGTTGGGCATTTAA
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