mRNA_H-paniculata_contig39083.10178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39083.10178.1
Unique NamemRNA_H-paniculata_contig39083.10178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: D7FXF7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.600e-21
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 PKLNSQKPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            P L  +K  TRYRDGKVVTTTGAKVIVE++KPEWDGGSRGKVKTKGKRGKGFV
Sbjct:  266 PGLTEKKKTTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 318
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BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: A0A8J4FDD9_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FDD9_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.450e-13
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 SQKPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            +Q+   RY DG+VVTT G K I+E    EWDGGSRGKV TKGKRGKGFV
Sbjct:   56 TQQSTVRYLDGRVVTTKGEKFIIEKTGEEWDGGSRGKVYTKGKRGKGFV 104
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BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: D8TN50_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TN50_VOLCA)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-13
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   13 SQKPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            +QKP  RY DG+VV+T G K I+E    EWDGGSRGKV TKGKRGKGF+
Sbjct:  240 AQKPKVRYLDGRVVSTKGEKFIIEKTSEEWDGGSRGKVYTKGKRGKGFI 288
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BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: A0A150GC07_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GC07_GONPE)

HSP 1 Score: 67.4 bits (163), Expect = 1.170e-12
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 KPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            KP  RY DG+VV+T G K I+E    +WDGGSRGKV TKGKRGKGFV
Sbjct:  120 KPKVRYLDGRVVSTKGEKFIIEKTGEDWDGGSRGKVFTKGKRGKGFV 166
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BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: A0A8J4FC95_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FC95_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 3.210e-12
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 SQKPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            +Q+   RY DG+VVTT G K I+E    EWDGGSRGKV TKGKRGKGFV
Sbjct:  247 TQQSTVRYLDGRVVTTKGEKFIIEKTGEEWDGGSRGKVYTKGKRGKGFV 295
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BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: A0A8J4EUR7_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EUR7_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 6.420e-12
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 SQKPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            +Q+   RY DG+VVTT G K I+E    +WDGGSRGKV TKGKRGKGFV
Sbjct:  253 AQQSTVRYLDGRVVTTKGEKFIIEKTAEDWDGGSRGKVYTKGKRGKGFV 301
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BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: A0A836BXZ9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BXZ9_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 3.280e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 KPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            KP  RY +G+VV+  G K I+E +  EWDGGSRGKV TKGKRGKGF+
Sbjct:  166 KPKVRYLEGRVVSNKGEKFIIEKVGEEWDGGSRGKVYTKGKRGKGFI 212
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BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: A0A4D9D606_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D606_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.050e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   31 RYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            R+R+G VV + G K +VE L P+WDGGSRGKVKTKGKRG GFV
Sbjct:  317 RFREGVVVASKGEKYVVEKLTPDWDGGSRGKVKTKGKRGPGFV 359
[Close]
BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: A0A2V0P1B0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P1B0_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 9.290e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 KPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            KP  RYR+G  VT+ G K +VE   P+WDGGSRGKV TKGKRGKGFV
Sbjct:  273 KPQVRYREGVAVTSRGEKYVVERP-PDWDGGSRGKVYTKGKRGKGFV 318
[Close]
BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Match: A0A5J4Y6Z0_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6Z0_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 3.530e-10
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 PKLNSQKPN----TRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGKGFV 159
            PK   Q PN     RYR+G+VVT  G K I E    EWDGGS+GKV TKGKRGKG V
Sbjct:  211 PKHACQAPNKKNQVRYREGQVVTAKGEKYITEKSGQEWDGGSKGKVVTKGKRGKGIV 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39083.10178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF7_ECTSI2.600e-2184.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J4FDD9_9CHLO1.450e-1367.35Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
D8TN50_VOLCA1.590e-1367.35Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A150GC07_GONPE1.170e-1268.09Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4FC95_9CHLO3.210e-1267.35Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4EUR7_9CHLO6.420e-1265.31Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A836BXZ9_9CHLO3.280e-1163.83Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A4D9D606_9STRA4.050e-1169.77Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2V0P1B0_9CHLO9.290e-1168.09Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A5J4Y6Z0_9CHLO3.530e-1059.65Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39083contigH-paniculata_contig39083:274..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D7FXF7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2E6I1@1,2SD7J@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003030.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930197.9744-CDS-H-paniculata_contig39083:273..3451622930197.9744-CDS-H-paniculata_contig39083:273..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39083 274..345 +
1691481187.4596324-CDS-H-paniculata_contig39083:273..3451691481187.4596324-CDS-H-paniculata_contig39083:273..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39083 274..345 +
1622930198.2865682-CDS-H-paniculata_contig39083:1251..13411622930198.2865682-CDS-H-paniculata_contig39083:1251..1341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39083 1252..1341 +
1691481187.470875-CDS-H-paniculata_contig39083:1251..13411691481187.470875-CDS-H-paniculata_contig39083:1251..1341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39083 1252..1341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39083.10178.1prot_H-paniculata_contig39083.10178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39083 274..1341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39083.10178.1

>prot_H-paniculata_contig39083.10178.1 ID=prot_H-paniculata_contig39083.10178.1|Name=mRNA_H-paniculata_contig39083.10178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
PKLNSQKPNTRYRDGKVVTTTGAKVIVESLKPEWDGGSRGKVKTKGKRGK
GFV*
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mRNA from alignment at H-paniculata_contig39083:274..1341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39083.10178.1 ID=mRNA_H-paniculata_contig39083.10178.1|Name=mRNA_H-paniculata_contig39083.10178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig39083:274..1341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAACTGAATTCTCAGAAGCCCAACACTCGCTACCGCGATGGAAAAGT
GGTGACGACCACTGGAGCTAAGGTATTTTATTACAGCATGGCGCTGTTGG
TGTACTTGATTTCCCTATCTTGTTTAGTGACCATCACATTGGAGTAGATG
AAAATCAGCGAGGTTTTCAATGTACGAGGTATGTCGGTAGTTAGTTATCT
AGACGGCAAGGTGGTCTTGATGGCGGTATATTATTGTTAGCTCCACCAGC
GTTTGGGTTAGTGTACAACATGTTGGTTTTGTCCTGAAAAATATGGTGTG
ACATCCTCGAGGTTCGAAACACGGCGAAACAATGGCCAAGTCAAGGTACT
GACAGTATGCACTTCGTTTTGTTTTGCCTGATCAACATCTTTGGTCCCCA
TGCCACGAGAAGCCGAGTTTAGCGACGGCCACCACAAGTGTTCCCCTGAC
GCGTCTTTCATTAGTTCATTGGAAAAGCTCCCCCGTGGTCTCAAAATTTA
ATTTGGTCATGATCCATTTAAAGGATATATCCATGCTTGATCTATGCTTG
GAGCTAGGCGATTTATCGCGCCATCAGCCCACAAATCAGGGATATCAGGA
TATATAACAAGCAAGGAACAAACATGAGTTGAAGAAAGATTTCTATGCCT
GTATCTGCTTTGCACACGTGTGGGCGACAATCAATCGATACATGCTTTGG
TTTATCATGTACTGGTGTTGTATGCTTTTTTCTTGTCCTCACTTTTAGGG
CGATATGCAGGCAATTTTCGCTGAGGAAGTAAAGGGTACCTCTTGGTTCA
CCACCGAAATATAGTCATTTCATGCTTCCAGTACATATTTCCACATCTAC
AGGGTTGTTCCTGTAATCCAAGCGAAGTGCTTCTAGACCCGTCCTTGCCT
AAACCTCCGAACTTAGCATCTACTGCGATGTGTTAACCATATTTTTTTTA
ACGAAGCGCTGTCCATTCGGTTGAGCAGGTGATAGTTGAGAGCCTGAAGC
CAGAGTGGGATGGAGGGTCAAGGGGCAAGGTAAAGACCAAGGGCAAGCGG
GGCAAAGGTTTTGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig39083:274..1341+

>mRNA_H-paniculata_contig39083.10178.1 ID=mRNA_H-paniculata_contig39083.10178.1|Name=mRNA_H-paniculata_contig39083.10178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig39083:274..1341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAACTGAATTCTCAGAAGCCCAACACTCGCTACCGCGATGGAAAAGT
GGTGACGACCACTGGAGCTAAGCCAAAACTGAATTCTCAGAAGCCCAACA
CTCGCTACCGCGATGGAAAAGTGGTGACGACCACTGGAGCTAAGGTGATA
GTTGAGAGCCTGAAGCCAGAGTGGGATGGAGGGTCAAGGGGCAAGGTAAA
GACCAAGGGCAAGCGGGGCAAAGGTTTTGTATGAGTGATAGTTGAGAGCC
TGAAGCCAGAGTGGGATGGAGGGTCAAGGGGCAAGGTAAAGACCAAGGGC
AAGCGGGGCAAAGGTTTTGTATGA
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