mRNA_H-paniculata_contig39.10160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Match: D7FIM3_ECTSI (Reelin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM3_ECTSI) HSP 1 Score: 855 bits (2209), Expect = 5.250e-300 Identity = 424/701 (60.49%), Postives = 524/701 (74.75%), Query Frame = 1
Query: 7 NPPWEPYPEKKRKLDERAQRSRNKHRQLGGRGGEKDNCNVGKRSSRNPATDSSLSSSXXXXXXXXTYASADLPPRPDRGKRHXXXXSKGRKSTXXXXXXXXXXXSASSHFHARVRPENCECLAEGGCGDEDGCCVEDLPGAAECPCHGKNTTAVILWQKPEVGICELCMEDGRLRNCCNRHYCKLCYEGTGNCPGCNLITVGANRDML--QQDMNKTNKDAT-----TVPLVRDGEECRSCLRRVQQGFNRKCCGEIFCSDCYFKSGHCPSCQHPVERRIKYQRIPRDPGLVPVLVGYLATLLVSLAVLALVAVIIASNNSLQKTIYKQTCYGFFPKCSVESKCISFE-GEIVNGLEPITEWRYCDDLSTVNKIYGKYCIFDTQVYVYSAERWGFDFCESDFLSTSKGVTVFEDQFELWSTPKVSSNTLASARWDHVTNGAISKLCGVGSGSEAMMFSGPNYREAETLDVDMSYGGKVVFFLKMGPSAQDPATAVCKPAYGGNVYLYYSVDQGETWEILSILETFVYRKEEFTQVEVELDSSLSAEMVRFLWKQENFENAFEFWALDDVRMVSYFPDGWHQKSAFRATIDSETRTMREIRCCLNSEQCELSKAKQEAVDCSQYISETSDERALLGAELYVIIAGLIVLARSTYRTGEGIVLQGLEYAVPAFLRKSKPKIFMVDDPVPGAMNKIFDLAVDQR 2085
+PPWEPYPE+KRKL+ERA+R ++K Q GG++ ++ +R +RNPATDSS SSS +SAD R G S S H RVRP+NC CL +GGCGDEDGCC EDLPG CPC + +TA IL +K V C +C+EDG+LR CCNRHYCKLCYEGTGNCPGC++ITVGANR +L Q+D + A T+P VRDGEECR CLR QGF RKCCGE +CS CYF++GHCPSC E+RI+YQRIPRDPG+VPVLVG+ AT+LV L LA V+V IASN+++ KT++ QTCYGFFP C+ KC++++ G+I NGLEPITEW C+D +TVNKIYG +C+FD +VYVYS E+WGFDFCE +F+S S G VFED FE+W +SSNT+ASARWDHVTNG +S +CG+G+G+ MMFSG N+RE ETLDVDM YGGKV+F +KMGP+ D + +CKPAYGGNVYLYYS+D G WE LSILETF YRKE FT+VEV++ S+L+A VRF WKQENFENA E+WALDDVR++SYF +GW + +AF +T+D E T+REIRCCLNSEQC+LSK +QEAVDC+ YI+ET +ERALLGAEL+V++AGL+ LARS YRTGEG+VL+G EYA+P FLRK + KIFM DDPVPG+MNK+F L V+ R
Sbjct: 2 SPPWEPYPERKRKLEERARRHKSKANQQVP-GGKQHVGSLERRRNRNPATDSSFSSS----------SSADDHARGADGA----VAGYDTDSVATSCGSYRKGLLKSGDSHVRVRPDNCSCLQDGGCGDEDGCCAEDLPGVEACPCFDRVSTAGILEEKLPVDTCGVCLEDGKLRTCCNRHYCKLCYEGTGNCPGCHVITVGANRGLLASQKDAADSASAAARAAVATLPGVRDGEECRKCLR---QGFARKCCGEFYCSSCYFQTGHCPSCHVLAEKRIEYQRIPRDPGVVPVLVGFFATVLVCLVTLAGVSVAIASNSAVIKTVFDQTCYGFFPSCTPGPKCVAYDSGDIGNGLEPITEWSACEDETTVNKIYGSFCVFDEEVYVYSDEKWGFDFCEEEFMSGSAGAYVFEDTFEMWDAENLSSNTMASARWDHVTNGRLSDVCGLGNGAGTMMFSGANFREVETLDVDMRYGGKVLFLMKMGPTVPDASAVLCKPAYGGNVYLYYSLDGGGVWETLSILETFAYRKEAFTEVEVDVPSTLNAASVRFRWKQENFENALEYWALDDVRVLSYFAEGWRETAAFESTVDVEHETLREIRCCLNSEQCDLSKNRQEAVDCAAYITETLNERALLGAELFVLLAGLVTLARSLYRTGEGMVLEGWEYAIPVFLRKKRAKIFMADDPVPGSMNKVFRLEVNLR 684
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Match: A0A836CJ23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ23_9STRA) HSP 1 Score: 462 bits (1188), Expect = 1.080e-147 Identity = 247/606 (40.76%), Postives = 329/606 (54.29%), Query Frame = 1
Query: 319 SASSHFHARVRPENCEC-LAEGGCGDEDGCCVEDLPGAAECPCHGKNTTAVIL---------------WQKPEVGICELCMEDGRLRNCCNRHYCKLCYEGTGNCPGCNLITVGANRDMLQQDMNKTNKDATTVPLVRDGEECRSCLRRVQQGFNRKCCGEIFCSDCYFKSGHCPSCQHPVERRIKYQRIPRDPGLVPVLVGYLATLLVSLAVLALVAVIIASNNSLQKTIYKQTCYGFFPKCSVESKCISFEGEIVNGL-EPITEWRYCDDLSTVNKIYGKYCIFDTQVYVYSAERWGFDFCESDFLSTSKGVTVFEDQFELW-STPKVSSNTLASARWDHVTNGAISKLCGVGSGSEAMMFSGPNYREAETLDVDMSYGGKVVFFLKMGPSAQDPATAVCKPAYGGNVYLYYSVDQGETWEILSILETFVYRKEEFTQVEVELDSSLSAEMVRFLWKQENFENAFEFWALDDVRMVSYFPDGWHQKSAFRATIDSETRTMREIRCCLNSEQCELSKAKQEAVDCSQYISETSDERALLGAELYVIIAGLIVLARSTYRTGEGIVLQGLEYAVPAFLRKSKPKIFMVDDPVPGAMNKIFDLAVDQ 2082
S ++ + R R +C C CG DGCC +D P AAECPC + A C+ C EDG +R CC YCK CYE TGNCP C LIT GAN+ ++ +A RDGEECR CLR QGF RKCCGE FCS CYF++G CP+C P +RR++ R PRDPG+ PVL+GY + LV LA LA+ AV+ A++ +L +T+ CYGFFP+CS E C+ EG G+ + + W+ C L TVNK+YG+YC+ D QVYV+S ++WG+D CE F G T F+D F+ W + ++N + S WDHVTNG +K ++ + + F+ KMGP DP A CKPAYGGNVY+Y+S + ENF++ E WALDDVR+VS F WH +AFRA + T+ +I+CC+NSEQC LSKA+QEAVDC+++ SE+ +ERA+LGAE +V+IA + L R Y T + +VL+G +P LR + K+FM DDP PG M+ F L V Q
Sbjct: 71 SGAAVRYQRARAGSCWCGRGAPACGGADGCCFDDAPDAAECPCRTRLRRAATAGGGRXXXXXXXXXXXXXXGGAARCDQCREDGLVRACCKGAYCKYCYEVTGNCPKCGLITTGANKGKYWAEVEAGEAEA------RDGEECRVCLR---QGFRRKCCGEFFCSACYFRAGACPACAAPAQRRVRLTRTPRDPGVAPVLLGYAVSALVCLAALAVAAVVAANDRTLPRTVSGYRCYGFFPECSGEDACVEVEGGAARGMPDALVSWKQCT-LQTVNKLYGQYCVHDKQVYVHSDKKWGYDMCEEGF---PPGATRFQDTFDAWGNATDAATNAMLSGAWDHVTNGPTTKF-------------------------EVRFVPPLQFWFKMGPPTDDPLAAACKPAYGGNVYIYFSTEG------------------------------------------ENFQDLLEHWALDDVRVVSAFAPQWHDGAAFRAQAAGDDATLAQIKCCMNSEQCSLSKAEQEAVDCAKFASESGNERAILGAERFVLIAAVAALIRWIYATAQAVVLRGWTQLLPEKLRPKQAKLFMADDPPPGIMDSQFALQVSQ 596
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Match: A0A6H5KNS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS6_9PHAE) HSP 1 Score: 405 bits (1042), Expect = 2.360e-133 Identity = 188/296 (63.51%), Postives = 232/296 (78.38%), Query Frame = 1
Query: 544 RHYCKLCYEGTGNCPGCNLITVGANRDMLQQDMNKTNKDAT-------TVPLVRDGEECRSCLRRVQQGFNRKCCGEIFCSDCYFKSGHCPSCQHPVERRIKYQRIPRDPGLVPVLVGYLATLLVSLAVLALVAVIIASNNSLQKTIYKQTCYGFFPKCSVESKCISFE-GEIVNGLEPITEWRYCDDLSTVNKIYGKYCIFDTQVYVYSAERWGFDFCESDFLSTSKGVTVFEDQFELWSTPKVSSNTLASARWDHVTNGAISKLCGVGSGSEAMMFSGPNYREAETLDVDMSYG 1407
RHYCKLCYEGTGNCPGC++ITVGANR +L + + A T+P VRDGEECR CLR QGF RKCCGE +CS CYF++GHCPSC P E+RI+YQRIPRDPG+VPVLVG+ AT+LV L LA V+V IA+N+++ KT++ QTCYGFFP C+ +KC++++ G+I NGLEPITEW C+D +TVNKIYG +C+FD +VYVYS E+WGFDFCE +F+S S G VFED FE+W T VSSNT+ASARWDHVTNG +S +CG+G+G+ MMFSG N+RE ETLDVDM G
Sbjct: 47 RHYCKLCYEGTGNCPGCHVITVGANRGLLASQKDAADSTAAAAKATVATLPGVRDGEECRKCLR---QGFARKCCGEFYCSSCYFQTGHCPSCHVPAEKRIEYQRIPRDPGVVPVLVGFFATILVCLVTLAGVSVAIANNSAVIKTVFDQTCYGFFPSCTPGAKCVAYDSGDIGNGLEPITEWSACEDETTVNKIYGSFCVFDEEVYVYSDEKWGFDFCEEEFMSGSAGAYVFEDTFEMWDTENVSSNTMASARWDHVTNGRLSDVCGLGNGAGTMMFSGANFREVETLDVDMRSG 339
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Match: A0A7S3M706_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M706_9STRA) HSP 1 Score: 202 bits (513), Expect = 7.190e-55 Identity = 122/364 (33.52%), Postives = 190/364 (52.20%), Query Frame = 1
Query: 745 CGEIFCSDCYFKSGHCPSCQHPVERRIKYQRIPR--DPGLVPV-LVGYLATLLVSLAVLALVAVIIASNNSLQKTIYKQTCYGFFPKCSVESKCISFEGEIVNGLEPI---TEWRYCDDLSTVNKIYGKYCIFDTQVYVYSAERWGFDFCESDFLSTSKGVTVFEDQFELWSTPKVSSNTLASARWDHVTNGAISKLCGVGSG---SEAMMFSGPNYREAETLDVDMSYGGKVVFFLKMGPSAQDPATAVCKPAYGGNVYLYYSVDQGETWEILSILETFVYRKEEFTQVEVELDSSLSAEMVRFLWKQENFENAFEFWALDDVRMVSYFPDGWHQKSAFRATIDSETRTMREIRCCLNSEQCE 1809
C +C DCY+KS C SC + I P D + L+G+ T+ V+L+V A+++A+ + CYGFF +C V + I + + G+ P+ + W+ C STV K+ K CI+D +Y S G+D C+S F ++GV VFED FE WS +S ++ SARWD V NG S CGVG+ A++F G REA TLDVD+S GGK+ + + M + +C+ A G+VY+ YS+DQG W L++ + +R + F +++ RF ++Q F + WALD+VR++ P W ++S FR + ++ +CCL+++ CE
Sbjct: 1 CNNYYCDDCYYKSPSCRSCGSQIGH-IGADHKPTFFDKAFMTTNLIGWAITIFVALSVAIFFAIVVAAEVQTPVGLSDYKCYGFFRECGV-TVYIDVDETVAAGVNPLPALSTWKECTLESTV-KLESKSCIYDQLLYYQSDRTMGYDVCQSAF---NQGVYVFEDTFENWSNTSHTSTSMRSARWDDVINGFTSDACGVGNEFGERRALVFRGEQVREAVTLDVDISSGGKLEYEMFMPSIEFGLKSELCRTAVQGSVYVEYSIDQGGNWTQLAVYDPLEWRSDTFFLNSIDIPPHGVTAATRFRFRQAGFSAPVDNWALDNVRVLRMLPTDWKEESGFRENVRESQSMIQRAQCCLDTDWCE 358
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Match: A0A7S0XB77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XB77_9STRA) HSP 1 Score: 162 bits (411), Expect = 5.760e-42 Identity = 89/259 (34.36%), Postives = 141/259 (54.44%), Query Frame = 1
Query: 772 YFKSGHCPSCQHPVERRIKYQRIPRDPGLVPVLVGYLATLLVSLAVLALVAVIIASNNSLQKTIYKQTCYGFFPKCSVESKCISFEGEIVNG---LEPITEWRYCDDLSTVNKIYGKYCIFDTQVYVYSAERWGFDFCESDFLSTSKGVTVFEDQFELWSTPKVSSNTLASARWDHVTNGAISKLCGVGS---GSEAMMFSGPNYREAETLDVDMSYGGKVVFFLKMGPSAQDPATAVCKPAYGGNVYLYYSVDQGETW 1530
YFK +C SC+ V +++ R ++ +L+G+ T+ + VL+L +++AS K IY YG F CS+ KC +VNG L P++ W+ CD L++VNK+ G I+D Q+Y + G+D C + F +G+ +FED FE W SN + S++W+++ NG + CG+ S G ++F GPNYR AET+D D++ GG + L + P D CK +Y + L YS+D G++W
Sbjct: 1 YFKLPYCRSCRTEVGKKLINYEYTRA-AMLSILIGWGVTIFFCIIVLSLFIIVVASEARTPKGIYDYKNYGIFRTCSI-IKCAEMSDSVVNGSMSLPPLSTWKLCD-LNSVNKLEGYALIYDNQLYTATNGNLGYDICSAQF---EQGIYIFEDTFENWKNLTFQSNLMKSSQWNNIYNGYANDYCGLPSKYGGKNTLVFGGPNYRYAETIDFDVTSGGHIEALLFIAPVGYDVTHPYCKSSYSSYIELQYSIDHGDSW 253
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Match: K0T1J4_THAOC (MYND-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1J4_THAOC) HSP 1 Score: 139 bits (351), Expect = 1.880e-30 Identity = 118/486 (24.28%), Postives = 203/486 (41.77%), Query Frame = 1
Query: 694 ECRSCLRRVQQGFNRKCCGEIFCSDCYFKSGHCPSCQHPVERRIKYQRIPRDPGLVPVLVGYLATLLVSLAVLALVAVIIASNNSLQKTIYKQTCYGFFPKCSVESKCISFEG------EIVNGLEPITEWRYCDDLSTVNKIYGKYCIFDTQVYVYSAERWGFDFC---------------ESDFL----STSKGVTVFEDQFELWSTPKVSSNTLASARWDHVTNGAISKLCGVG------------SGSEAMMFSGPNYREAETLDVDMSYGGKVVFFLKMGPSAQDPATAVCKPAYGGNVYLYYSVDQGETWEILSILETFVYRKEEFTQVEVELDSSLSAEMVRFLWKQENFENAFEFWALDDVRMVSYFPDGWHQKSAFRATIDSETRTMREIRCCLNSEQCELSKAKQEAVDCSQYISETSDERALLGA-ELYVIIAGLIVLARSTYRTGEGIVLQGLEYAVPAFLRKSKPKIFMVDDP 2037
ECR+CL R G R+CCGE +C CY+ G CPSC + P DP VL + + +L A +A + + + T++ TC G+F C + S C+ + ++ EP LS +++ G CI+D ++Y +S R G+D C +D L S GV + +D FE + + N + W + N S CG ++A++F+G R+A ++ V++S+GG V+F+LKMGP C A+ G++ L + W ++ + +R F V+ E+ +F Q +F+ + WA+DD R+++ F W S F + + NSE+C + ++ + ++ L EL V+ +I +A+S Y G +++G+ ++ P D P
Sbjct: 443 ECRACLER---GALRRCCGEYYCHACYYLRGSCPSCGAEAVLTGAASKGPPDPSRGAVLASWALSAAFALLAAAGLAAALVGHWTRPTTVWGHTCKGWFADCDL-SVCVEHDAGDDGGSPLLPAPEPYDACSVGKSLSAPHQV-GSACIYDAELYHWSDGRHGYDLCVASPREEGSRPRSVSSADPLLLHDSDGGGVYLIDDDFE-----RPAEN---AGFWSELVNAERSSACGANRNLPERGDYYSVKNTKALVFTGVGARQATSVPVNVSFGGTVMFYLKMGPIISSDEDIACLAAFTGDILLEFMTRDSREWTKIASYPVYKFRGHGFKFVQEEIPIDARTNGTQFRISQLSFDPLRDHWAIDDFRVMARFDPMWIDSSEFERRKAVQGNHAQTPSLGFNSEKCATT------------VTGFKEAKSRLNLDELIVVYVCVISVAKSVY----GRLVRGISTGFKGSIQHVHPTTNAEDFP 899
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Match: A0A7Z9GEH3_9FLAO (PKD domain-containing protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7Z9GEH3_9FLAO) HSP 1 Score: 60.5 bits (145), Expect = 1.130e-5 Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 1
Query: 1264 TLASARWDHVTNGAISKLCGVGSGSEAMMFSGPNYREAETLDVDMSYGGKVVFFLKMGPSAQDPATAVCKPAYGGNVYLYYSVDQGETWEILSILETFVYRKEEFTQVEVELDSSLSAEMVRFLWKQENFENA-FEFWALDDV 1689
T+ A W V A S CG SG+ A+ F G R AET+D++++ GG V F+L G + P + V L YSVD G +W +S +Y FT + + + RF W Q F A ++ W++DD+
Sbjct: 619 TIDGAVWTTVAGAAPSLGCGSVSGN-ALYFDG-TIRYAETVDMNVTVGGTVDFWLMYGKNGSAPCELLNA---ADEVDLDYSVDGGLSWVNISTYSNTLYAT--FTFLSETIPPAAQTGTTRFRWNQPTFSGAVYDHWSIDDM 754
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Match: K1PII9_CRAGI (Reelin n=5 Tax=Crassostrea gigas TaxID=29159 RepID=K1PII9_CRAGI) HSP 1 Score: 57.8 bits (138), Expect = 9.040e-5 Identity = 49/186 (26.34%), Postives = 81/186 (43.55%), Query Frame = 1
Query: 1210 TVFEDQFELWSTPKVSSNTLASARWDHVTNGAISKLCGVGSGSEAMMFSGPNYREAETLDVDMSYGGKVVFFLKMGPSAQDPATAVCKPAYGGNVYLYYSVDQGETWEILSILETFVYRKEEFTQVEVELDSSLSAEMVRFLWKQ---ENFENAFEFWALDDVRMVSYFPDGWHQKSAFRATIDSE 1758
T +D FE S++ +W V G + K C + A +F+G NYR+ T+D+D+ V F +G DP T + +V L YS + G TW+ L +++ Y++ Q V L S + R W Q + WA+D+V + + H + +F +I S+
Sbjct: 2949 TYLKDNFE--------SSSFDKTKWSLVEGGELGKPCENLAEGSAAVFTGSNYRQLVTIDLDLRNTRFVQFIGSLGGVDVDP-TCFTPQSPEHSVILQYSNNGGITWDDLHVMDFTTYKRPR--QEYVLLPQSARTKNTRLRWWQPLNRKWSQTGPQWAIDNVLIGGNEINPSHMQVSFDDSIQSD 3123 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39.10160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig39.10160.1 >prot_H-paniculata_contig39.10160.1 ID=prot_H-paniculata_contig39.10160.1|Name=mRNA_H-paniculata_contig39.10160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=695bp MANPPWEPYPEKKRKLDERAQRSRNKHRQLGGRGGEKDNCNVGKRSSRNPback to top mRNA from alignment at H-paniculata_contig39:260..7445- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig39.10160.1 ID=mRNA_H-paniculata_contig39.10160.1|Name=mRNA_H-paniculata_contig39.10160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7186bp|location=Sequence derived from alignment at H-paniculata_contig39:260..7445- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig39:260..7445- >mRNA_H-paniculata_contig39.10160.1 ID=mRNA_H-paniculata_contig39.10160.1|Name=mRNA_H-paniculata_contig39.10160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4170bp|location=Sequence derived from alignment at H-paniculata_contig39:260..7445- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |